76 lines
2.6 KiB
Python
Executable File
76 lines
2.6 KiB
Python
Executable File
#!/usr/bin/env python3
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import os
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import sys
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from io import StringIO
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from optparse import OptionParser
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import numpy as np
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import damask
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scriptName = os.path.splitext(os.path.basename(__file__))[0]
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scriptID = ' '.join([scriptName,damask.version])
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# definition of element-wise p-norms for matrices
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# ToDo: better use numpy.linalg.norm
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def norm(which,object):
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if which == 'Abs': # p = 1
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return sum(map(abs, object))
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elif which == 'Frobenius': # p = 2
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return np.sqrt(sum([x*x for x in object]))
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elif which == 'Max': # p = inf
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return max(map(abs, object))
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else:
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return -1
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# --------------------------------------------------------------------
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# MAIN
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# --------------------------------------------------------------------
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parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
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Add column(s) containing norm of requested column(s) being either vectors or tensors.
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""", version = scriptID)
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normChoices = ['abs','frobenius','max']
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parser.add_option('-n','--norm',
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dest = 'norm',
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type = 'choice', choices = normChoices, metavar='string',
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help = 'type of element-wise p-norm [frobenius] {%s}'%(','.join(map(str,normChoices))))
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parser.add_option('-l','--label',
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dest = 'labels',
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action = 'extend', metavar = '<string LIST>',
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help = 'heading of column(s) to calculate norm of')
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parser.set_defaults(norm = 'frobenius',
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)
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(options,filenames) = parser.parse_args()
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if filenames == []: filenames = [None]
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if options.norm.lower() not in normChoices:
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parser.error('invalid norm ({}) specified.'.format(options.norm))
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if options.labels is None:
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parser.error('no data column specified.')
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for name in filenames:
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damask.util.report(scriptName,name)
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table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
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for label in options.labels:
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data = table.get(label)
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data_norm = np.empty((data.shape[0],1))
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for i,d in enumerate(data):
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data_norm[i] = norm(options.norm.capitalize(),d)
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table.add('norm{}({})'.format(options.norm.capitalize(),label),
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data_norm,
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scriptID+' '+' '.join(sys.argv[1:]))
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table.to_ASCII(sys.stdout if name is None else name)
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