#!/usr/bin/env python3 import os import sys from io import StringIO from optparse import OptionParser import numpy as np import damask scriptName = os.path.splitext(os.path.basename(__file__))[0] scriptID = ' '.join([scriptName,damask.version]) # definition of element-wise p-norms for matrices # ToDo: better use numpy.linalg.norm def norm(which,object): if which == 'Abs': # p = 1 return sum(map(abs, object)) elif which == 'Frobenius': # p = 2 return np.sqrt(sum([x*x for x in object])) elif which == 'Max': # p = inf return max(map(abs, object)) else: return -1 # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """ Add column(s) containing norm of requested column(s) being either vectors or tensors. """, version = scriptID) normChoices = ['abs','frobenius','max'] parser.add_option('-n','--norm', dest = 'norm', type = 'choice', choices = normChoices, metavar='string', help = 'type of element-wise p-norm [frobenius] {%s}'%(','.join(map(str,normChoices)))) parser.add_option('-l','--label', dest = 'labels', action = 'extend', metavar = '', help = 'heading of column(s) to calculate norm of') parser.set_defaults(norm = 'frobenius', ) (options,filenames) = parser.parse_args() if filenames == []: filenames = [None] if options.norm.lower() not in normChoices: parser.error('invalid norm ({}) specified.'.format(options.norm)) if options.labels is None: parser.error('no data column specified.') for name in filenames: damask.util.report(scriptName,name) table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name) for label in options.labels: data = table.get(label) data_norm = np.empty((data.shape[0],1)) for i,d in enumerate(data): data_norm[i] = norm(options.norm.capitalize(),d) table.add('norm{}({})'.format(options.norm.capitalize(),label), data_norm, scriptID+' '+' '.join(sys.argv[1:])) table.to_ASCII(sys.stdout if name is None else name)