596ee18da9
improved the regex for header reading
2014-06-08 14:43:32 +00:00
31aded8311
no scaling of the output by size (seeds files are within 0..1)
...
plus some polishing here and there
2014-06-08 12:48:32 +00:00
b0ab048d7b
now aware of "origin" keyword in seeds-file
2014-06-07 18:15:08 +00:00
e3c4e0ecfc
added option to override bounding box calculation from data with own geometry.
2014-06-07 18:14:30 +00:00
72e9c512bd
polishing of variable names, comments, and some of the programming structure.
2014-06-07 18:13:29 +00:00
2f249773c9
fixed missing Python module
2014-06-06 15:11:15 +00:00
32b315487c
removed debug printing
2014-06-06 14:46:41 +00:00
59e8cd1d7e
new script: Add data in column(s) of second ASCIItable selected from row that is given by the value in a mapping column
2014-06-06 14:35:37 +00:00
63c1a0a212
updated to croaking, scriptID, IO-piping.
2014-06-06 09:43:28 +00:00
522efaac92
added immutable option
2014-06-05 17:18:52 +00:00
9834c8466c
scripts to scale, shift, and rotate scalar, vector, or tensor quantities of ASCIItables (in-place!)
2014-05-27 08:08:10 +00:00
3ec323e564
Create seed file by taking microstructure indices from given ASCIItable column.
2014-05-26 14:57:39 +00:00
f81c6f6890
changed ASCIItable reading from _asArray (deprecated) to _readArray.
...
observe physical box size.
added compatibility to VTK > version 5.
2014-05-26 14:35:25 +00:00
65f1f55a87
added option to pre-rotate orientation (change lab frame)
2014-05-26 14:31:42 +00:00
51e7f9eed9
added --reverse option. corrected help hint regarding sorting order
2014-05-23 14:05:58 +00:00
06715dc99f
added "no data check" and updated script backbone to be consistent with other scripts (croak).
2014-05-19 13:43:26 +00:00
89c896678b
added printing of cli arguments to seeds_fromRandom, fixed regression in compile_CoreModule and DAMASK_spectral_doxygen
2014-05-15 09:58:31 +00:00
8a80f5ec7a
fixed typo that prevented selection of "Moore" neighborhood.
...
made "boundary" and "biplane" synonyms.
adopted more modern treatment of geom-files.
introduced scale for voxel size (independent of physical size and resolution given in geom-file).
2014-05-14 15:26:06 +00:00
8b9ed55928
small "beautification"
2014-05-13 15:03:55 +00:00
13f1607e15
changed default behavior to (system-provided) random seed instead of fixed "0"
2014-05-03 02:36:23 +00:00
0885ea8023
changed variable interpolation to be useable in connection with dictionary definitions for formulas. Slightly less efficient but now much more powerful...
2014-05-02 19:56:56 +00:00
a8a9c8eef5
added possibility to not sort (--sort none) output by its --separation such that the output can be used in conjunction with the VTK files produced by DAMASK.
2014-04-14 21:45:24 +00:00
a85ea307f1
changed (with backward compatibility) option "origin" to more suitable name of "center" since it specifies the position of the primitive's center, while "origin" could be mistaken for the lower left corner or such...
2014-04-09 14:22:27 +00:00
babde13c6a
capture missing --vtk option
2014-04-03 01:00:00 +00:00
33af5af8cb
some small changes on the header/shebang
2014-04-01 19:29:14 +00:00
342ca0be47
tested new scripts to update shebang, all files got same shebang (and for python files encoding)
2014-04-01 18:41:14 +00:00
782b54a430
more LF, Id, and executable status changes
2014-04-01 17:52:31 +00:00
559f14ca35
prepended *draw_manual for faster processing in "new" Mentat, thx Christoph
2014-04-01 17:06:10 +00:00
188002f16e
more LF, Id, and executable status changes
2014-04-01 16:58:54 +00:00
c254f87814
now assuming periodic microstructures (was not fully correct before, assuming non-periodicity)
2014-04-01 16:43:39 +00:00
16743f8631
explicitly state unbuffered ASCIIoutput
2014-03-28 18:15:37 +00:00
f19955c84a
added options to specify the columns for the grain IDs and segments
...
improved error handling
2014-03-12 14:26:44 +00:00
0363b1fb04
updated reporting (according to addCauchy)
2014-03-10 14:01:39 +00:00
e10f8f1b5e
corrected typo
2014-03-04 16:43:22 +00:00
943349fdbb
bunch of new scripts:
...
gwyddion_filter tries to smoothen out Gwyddion data sets.
vtk_fromGwyddion produces vtk mesh from Gwyddion data set.
geom_addPrimitive allows to add box, cylinder, or ellipsoidal blobs to geom file.
2014-03-04 03:34:34 +00:00
6fd8407d6e
moved "predefined" to colormap init
...
cleaned interpolate to not change color model
fixed color range cropping issue
2014-02-28 16:09:01 +00:00
63569b19b6
added use of "defaultdict" from collections
2014-02-28 15:56:28 +00:00
fdbde250dc
deleted obsolete table.data_rewind to be pipe-safe
2014-02-28 15:55:48 +00:00
27c83f60a6
fixed typo
2014-02-26 15:05:34 +00:00
7f08c976c3
skip file if mandatory column not found in ASCIItable
2014-02-26 14:56:06 +00:00
98a8b47a09
can now read legacy VTK files with unstructured grid data
2014-02-24 19:23:08 +00:00
9d402022aa
fixed small bug when using renumber option
2014-02-15 10:37:50 +00:00
371a027de9
added option '--renumber' to geom_rescale and geom_grainGrowth to renumber microstructures from 1 to N (without gaps), off by default.
...
added metavar information to some scripts
2014-02-14 13:17:29 +00:00
a659d071a9
added '--degrees' option to indicate Euler angles unit
2014-02-10 18:01:21 +00:00
85e4896478
"--degrees" option to specify Euler angles in degrees (instead of radians)
2014-02-09 20:36:42 +00:00
ccb950f3d8
checked Unix command piping conformity -- seems to now work:
...
seeds_fromRandom |
geom_fromVoronoiTessellation |
geom_grainGrowth |
geom_unpack |
geom_pack
However, grainGrowth functionality seems broken...
2014-02-03 23:44:29 +00:00
f66c0727d0
fixed wrong type for arguments introduced last time (must be string to have multiples)
2014-02-03 20:23:49 +00:00
7a9fa061de
added --compress option: for ang files filtered to have single orientation in grain (OIM filter), microstructure and texture in material.config are compressed
2014-01-30 12:00:20 +00:00
3c2af8e7a6
fixed dropped file handle when flushing closed output...
2014-01-29 21:16:44 +00:00
24d7f55f55
check whether output is already stopped (in command piping for instance)
2014-01-29 21:13:36 +00:00
cd18ec2abf
removed unneccesary table.data_rewind, which breaks command piping
2014-01-29 21:03:56 +00:00
ee99216edc
polishing compile_CoreModule, bug fix for Makefile
2014-01-28 07:34:13 +00:00
1bd456aa22
corrected options.error --> parser.error
2014-01-27 14:30:37 +00:00
a1cfc85d74
produce VTK unstructured grid with voxels around all points given in an ASCIItable.
2014-01-27 14:10:29 +00:00
13fed38a2f
add scalar and RGB tuples from ASCIItable to existing VTK voxel cloud (*.vtu)
2014-01-27 14:05:03 +00:00
c9c6588f7c
renamed seeds file related scripts in a (hopefully) consistent manner
2014-01-23 20:48:33 +00:00
eda9076157
use existing geom file and produce seed points from each voxel (filtering possible)
2014-01-23 20:43:42 +00:00
8b4af554ba
added verbosity on help messages
2014-01-20 14:41:56 +00:00
649b8b91fe
fixed reporting of arguments
2014-01-15 15:10:13 +00:00
db18b3c77f
added missing script arguments in documentation part of the header
2014-01-14 10:53:45 +00:00
0f101c8dbf
adopted to improved HDF5 format
2014-01-13 16:22:01 +00:00
aab0208c65
more modifications, only configure needs modifications
2014-01-12 17:29:00 +00:00
a614e76968
first post processing script for HDF5 output
2014-01-07 20:42:51 +00:00
4f30a6e05b
now compatible with new table.data_readArray method
2013-12-31 21:06:32 +00:00
2f1db8f69a
introduced delimiter option (default = tab) for ascii table output, use space for geometry files
2013-12-17 08:16:29 +00:00
e20ffb379d
changed numpy.readtxt logic from "data_asArray" returning a copy to inplace "data_readArray" now directly storing into self.data
2013-12-14 03:51:22 +00:00
600389ac44
new script to sort ASCIItable according to (multiple) columns
2013-12-14 03:48:50 +00:00
37046cd2ea
changed Fortran standard to 2008
2013-12-12 22:30:22 +00:00
0f8790c148
clarified help string
2013-12-12 08:48:57 +00:00
10c8a1a3ce
corrected typo in usage hint
2013-12-12 02:35:01 +00:00
894776ca67
fixed stupid bug addressing a dict by dict{key} instead of dict[key]
2013-12-11 14:30:27 +00:00
44b3687e7c
added option to invert output data range (1.0 -- 0.0 instead of 0.0 -- 1.0)
2013-12-10 00:27:22 +00:00
e4cea31a9d
small bug fix: options.error --> parser.error
2013-12-09 15:58:35 +00:00
e2d4cc8b3d
fixed former nonsense definition of lab frame direction
2013-12-09 15:57:21 +00:00
26690859bb
deal more gracefully with problematic user input.
2013-12-09 15:54:47 +00:00
7fb1a3130a
now VTK 6 compatible
2013-12-09 15:41:29 +00:00
c7ac903dc7
fixed missing comma in script list...
2013-12-09 15:37:36 +00:00
090fca8683
deleted left-over debug statement
2013-11-26 20:24:40 +00:00
d498eca242
deleted left-over debug statement
2013-11-26 20:22:52 +00:00
b63d2eafe8
new scripts for:
...
-generating vtk point cloud from x,y,z ASCIItable data
-adding scalar values and color tuples from ASCIItable to vtk point cloud
-permuting data in ASCIItable columns (used to shuffle ordered grain indices)
2013-11-26 20:19:27 +00:00
a45c7dbb62
new ASCIItable scripts to add
...
- quaternion and/or Euler representation of lattice orientation (given in rotation matrix, etc.)
- RGB color code of crystal direction in laboratory frame (matching closely the TSL-OIM scheme of inverse pole figures).
2013-11-25 19:11:02 +00:00
0337b4f319
added script to produce VTK point cloud from seed file coordinates
2013-11-20 17:33:05 +00:00
feaccae652
set threshold for values treated as zero to 1.e-12 (was 1.e-15) to avoid flip in strain direction
2013-11-19 19:39:14 +00:00
e1e76cb257
fixed bug in OIMang_hex2cub.py, added test for correct number of microstructures (should be equal to header info)
2013-11-14 17:37:42 +00:00
d2cbca35b2
fixed syntax error in last commit
2013-11-13 12:51:48 +00:00
9b7007b937
added accidently deleted output of texturei again
2013-11-13 12:46:20 +00:00
103ae3cd0d
introduced on the fly copying for 2D microstructures in 3 dimension
2013-11-12 17:04:36 +00:00
fc8811c07d
switched to faster algorithm and removed buggy multi-threading
2013-11-11 13:00:31 +00:00
9ac8846e41
compiling with hdf5 is now working for DAMASK (if HDF5=ON) and for playground example in private
2013-11-07 12:52:36 +00:00
463ecfd296
switched to damask.ASCIItable parsing, now aware of synonyms in geometry header, and speed-up by some orders of magnitude due to scipy.ndimage.filters use...
2013-11-04 14:12:10 +00:00
1ff98296b3
added output of default values, still does not run for my geometry
2013-10-25 11:58:03 +00:00
5c1c0028e0
throw error if RCB segment list is not properly connected, i.e., complain about "dead ends" along the segment chain.
2013-10-24 18:55:16 +00:00
705d23a5ed
fixed bug for non-present "microstructure" info in header.
2013-10-15 12:36:52 +00:00
47577e3d11
introduced synonym "grains" for deprecated "grains" to ensure backward compatibility
2013-10-15 09:50:20 +00:00
6f467c0789
added "-fPIC" flag to make sure (independent of local f2py settings) that position independent code will be generated for the shared "code" object in DAMASK's python lib
2013-09-23 19:07:12 +00:00
9280b0a4e2
fixed bug where configuration wrote floating point numbers for grain IDs and texture IDs.
2013-09-23 18:35:30 +00:00
1915215c6f
commented out not working use of vtk class
2013-09-20 11:27:11 +00:00
3eb8aa1362
checked for python3 compatibility:
...
use "print('foo')" instead of "print 'foo'"
and "except(error) as e" instead of "except error,e"
2013-09-14 10:52:02 +00:00
a17b85cba8
deleted wrong colormap script, was there twice. correct one (modified recently by Philip) is called perceptualUniformColormap
2013-09-11 08:15:05 +00:00
022696c8f3
fixed output to screen
2013-09-11 07:45:42 +00:00
Luv Sharma