Commit Graph

486 Commits

Author SHA1 Message Date
Philip Eisenlohr a4772343b0 adopted new ASCIItable API. some polishing. 2015-08-07 22:08:54 +00:00
Philip Eisenlohr d4e748b654 outsourced multiple repetitive functions into ASCIItable class.
changed ASCIItable API from file-handles to filenames.

adopted these changes in pre and post processing scripts.

unified behavior and look.

fixed bugs here and there.

improved functionality.
2015-08-07 19:03:26 +00:00
Philip Eisenlohr 020a3e2634 superfluous since same can be (even more flexibly) accomplished with:
reLabel -l old -s old+tag
2015-07-26 00:41:42 +00:00
Philip Eisenlohr 0db33f21b5 superfluous since same can be accomplished with:
showTable -l -d (labels and data)
2015-07-26 00:39:32 +00:00
Chen Zhang 657ed7ed35 group voxels/pts by orientation and position, require spicy. 2015-07-24 13:30:33 +00:00
Philip Eisenlohr e08b7bd02e forgot to rescale transparency mask by pixelsizes. 2015-07-16 22:34:26 +00:00
Tias Maiti 3c9d6df889 fixed typo in last commit 2015-07-15 18:15:39 +00:00
Tias Maiti 6ebc490207 fixed broken functionality by adopting new ASCIItable class output for data_readArray(). 2015-07-15 16:57:03 +00:00
Philip Eisenlohr dce0501358 script to rename labels in an ASCIItable 2015-07-10 16:28:01 +00:00
Philip Eisenlohr f8658ffea1 added “gap” value to render pieces of resulting image transparent. 2015-07-07 14:53:55 +00:00
Philip Eisenlohr 812d17f91c streamlined column processing based on recently introduced asciitable functionality. 2015-07-01 15:48:34 +00:00
Martin Diehl ef243d3e19 added references 2015-06-30 14:52:48 +00:00
Philip Eisenlohr 47249bb52a added possibility to scale deformation fluctuation field. 2015-06-29 09:44:49 +00:00
Philip Eisenlohr 9b1f16e99e report data range.
gracefully deal with constant field (below 1e-8 noise).
2015-06-19 11:36:21 +00:00
Tias Maiti 94423cc7ac added scriptID line “ removed during last commit” 2015-06-17 19:47:50 +00:00
Tias Maiti 012c830eff removed writing of debugging statement to final output 2015-06-17 19:44:01 +00:00
Philip Eisenlohr e440305532 streamlined ASCIItable error checking. 2015-06-17 06:52:43 +00:00
Philip Eisenlohr 5cc7b60a88 simplified processing of ASCIItables by utilizing the improved class methods.
modernized file looping.
2015-06-16 17:21:24 +00:00
Philip Eisenlohr c089ff9256 now with $ID$ and correct line endings… 2015-06-15 18:13:06 +00:00
Philip Eisenlohr 6086baba52 Generate PNG image from scalar data on grid deformed by (periodic) deformation gradient. 2015-06-15 18:12:38 +00:00
Philip Eisenlohr 37792f67df automatically figure dimension of labels to tag. 2015-06-13 11:55:20 +00:00
Philip Eisenlohr e243632eb5 simplifications by adopting functionality provided by new asciitable class methods. 2015-06-08 05:07:14 +00:00
Martin Diehl d99e34d870 typo caused problems with more than one tensor 2015-06-06 15:42:29 +00:00
Philip Eisenlohr 129446e687 simplified script. deals now only with single format at a time. result is printed to STDOUT unless “basename” option specified. 2015-06-06 11:12:07 +00:00
Philip Eisenlohr bb9e080790 input file handling now save for large file count.
reshape input rotation matrix to (3,3).
2015-06-05 11:47:27 +00:00
Philip Eisenlohr 5adbe74b10 changed library function name table.labels_index() to table.label_index() 2015-06-05 11:44:17 +00:00
Martin Diehl 2877066a6c removed debug statement and simplified 2015-06-04 08:51:10 +00:00
Yang Su bb677a26aa added interface for predefined colormaps 2015-05-29 18:50:54 +00:00
Yang Su 92654dc2cd fixed syntax bug, instantiating of Color object, and file closure. 2015-05-29 18:36:09 +00:00
Philip Eisenlohr 54746c85d3 fixed bug for only blacklisting. 2015-05-28 22:31:32 +00:00
Philip Eisenlohr c327735c0d order of whitelist is maintained in output (only if no blacklist is specified). allows to rearrange column order in tables. 2015-05-27 23:02:11 +00:00
Harsha Phukan 4107d5d1d2 Script to calculate Quaternion from input orientation matrix 2015-05-26 06:38:48 +00:00
Martin Diehl 5900fa4bf5 corrected defaults and simplified loops 2015-05-25 10:49:20 +00:00
Martin Diehl 1f160dfd72 FFT was at single precision only 2015-05-24 16:35:37 +00:00
Martin Diehl e8fb49edc6 missing bracket 2015-05-22 06:17:35 +00:00
Martin Diehl 737e474cea consistent handling of random number per file and always reporting as comment, fix for permuteData needed because of new asciitable behavior 2015-05-22 05:56:49 +00:00
Martin Diehl fbfa55e910 adjusted to new table style and naming of output 2015-05-22 04:57:05 +00:00
Philip Eisenlohr f363d81de5 simplified column parsing 2015-05-21 21:54:47 +00:00
Yannick Naunheim 2349e6c79c standard way of reporting 2015-05-21 16:04:19 +00:00
Philip Eisenlohr 14b921f6d5 corrected help text. 2015-05-21 00:13:50 +00:00
Philip Eisenlohr df5dd98576 simplified boolean dictionaries to “if else” constructs. 2015-05-21 00:13:11 +00:00
Philip Eisenlohr acc2cb656b simplifications due to better functionality available through asciitable.py
output filename format has slightly changed: binned-X-Y_weighted-W_
2015-05-21 00:08:32 +00:00
Philip Eisenlohr 439d778cc0 simplified column check.
fixed typos and improved help.
2015-05-20 23:21:35 +00:00
Philip Eisenlohr 973f092fd9 similar to imageData but uses RGB triplet as color value instead of mapping a scalar.
Can only use columnar data and not 2D arrays, though.
2015-05-19 21:15:15 +00:00
Philip Eisenlohr ee65b269ad simplified data column determination. 2015-05-19 21:14:19 +00:00
Harsha Phukan f7faa3eeca finally fixed the bug in the transformation and incorporated rotation to conform to TSL convention 2015-05-18 22:28:24 +00:00
Martin Diehl 03fef5fd6e simplified option parsing 2015-05-15 13:49:16 +00:00
Martin Diehl 6a38b4396f simplified help 2015-05-15 13:34:52 +00:00
Martin Diehl a3bed5cc42 short options conflicting with typical use 2015-05-15 10:33:32 +00:00
Martin Diehl a451a69c2c corrected default type (only list for 'extend') 2015-05-14 18:48:15 +00:00