Commit Graph

1096 Commits

Author SHA1 Message Date
Martin Diehl 76f07e4c1e tmp_path is preferred over tmpdir 2020-09-29 19:25:50 +02:00
Philip Eisenlohr 350f5eb66a improved from_ODF documentation 2020-09-29 12:55:00 -04:00
Philip Eisenlohr 31f86c28f4 [skip ci] added parameter description; shortened hybrid_IA pre-loop logic 2020-09-29 11:15:10 -04:00
Martin Diehl 8d204ea445 [skip ci] small simplification 2020-09-28 16:17:43 +02:00
Martin Diehl d2cfcdaca0 reference Data for ODF sampling (hybridIA) + skeleton of a test 2020-09-28 16:14:27 +02:00
Martin Diehl 95b85626d8 general hybridIA functionality 2020-09-28 07:40:43 +02:00
Martin Diehl 8ec1014134 Merge remote-tracking branch 'origin/development' into cleaning 2020-09-27 18:11:43 +02:00
Vitesh Shah e8e1960391 Consistency for docstrings 2020-09-26 18:02:25 +02:00
Vitesh Shah d0028b2eea Merge branch 'development' into fix-docstrings-for-sphinx 2020-09-26 17:56:42 +02:00
Martin Diehl 9e3506b8ef thorougly testing seeding functionality 2020-09-25 07:41:58 +02:00
Philip Eisenlohr e58cc4bfa0 removed substitute call for direct mapping; added seed from averaging of material ID cloud 2020-09-24 22:06:43 -04:00
Martin Diehl e8454c40c7 more tests 2020-09-24 22:59:31 +02:00
Martin Diehl 4960cf43d4 documented and tested 2020-09-24 21:43:04 +02:00
Martin Diehl e5b414419a Poisson disc for periodic situation 2020-09-24 21:26:16 +02:00
Martin Diehl ec23ab8b61 basic test for seeding 2020-09-24 21:06:26 +02:00
Martin Diehl b5ea04424b Merge remote-tracking branch 'origin/development' into seeds-module 2020-09-24 20:58:53 +02:00
Philip Eisenlohr 8c8db5b99f switched "Geom.materials" to "Geom.material" 2020-09-23 17:27:15 -04:00
Martin Diehl b995f34834 Merge branch 'development' into geom-fully-out-of-place 2020-09-23 22:50:20 +02:00
Martin Diehl 8c83566b71 suppress warning
we already handle the invalid FPE
2020-09-23 21:10:39 +02:00
Martin Diehl 9bce1ddc29 simplified 2020-09-23 20:48:34 +02:00
Franz Roters 3612b17295 corrected Sphinx warnings 2020-09-23 16:21:20 +02:00
Martin Diehl c85d27baec functionality for seed creation 2020-09-23 09:45:36 +02:00
Martin Diehl ae579d8baa allow to specify seed IDs explicitly 2020-09-23 09:28:00 +02:00
Sharan Roongta 5a64dd30e1 Merge branch 'development' into modernize-testing 2020-09-23 00:05:59 +02:00
Philip Eisenlohr 683161d479 Merge branch 'development' into geom-fully-out-of-place 2020-09-22 15:22:58 -04:00
Philip Eisenlohr 05835bacd3 removed set_X(), duplicate(), and .homogenization; renamed ".microstructure" to ".materials" 2020-09-22 14:49:28 -04:00
Martin Diehl 716a406361 Merge remote-tracking branch 'origin/master' into modernize-testing 2020-09-22 16:51:36 +02:00
Franz Roters 7801f527f2 Merge remote-tracking branch 'origin/load-save-X-no-suffix' into development 2020-09-22 14:57:39 +02:00
Martin Diehl 5ef761fb98 inform the user about missing items in material.yaml 2020-09-21 19:10:20 +02:00
Philip Eisenlohr 188905766f removed Geom.get_X() methods in favor of direct property access 2020-09-21 11:13:53 -04:00
Philip Eisenlohr ca2f3f9493 set_X and add_comments methods now default to out-of-place 2020-09-21 10:29:07 -04:00
Martin Diehl 7bdd44a3d9 consistent names:
default file operations: save/load, non-default save_xx/load_xx
2020-09-20 22:04:28 +02:00
Martin Diehl d33507866d statistically more valid test 2020-09-20 21:50:52 +02:00
Martin Diehl 6ab88aad2b default format for Table is ASCII
hence, renamed load_ASCII/save_ASCII to load/save
2020-09-20 20:45:06 +02:00
Martin Diehl 5895e74029 p is never above 1
1e-4 is quite low, usually we are far above. 1e-3 from https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.normaltest.html
is not too far away.
2020-09-20 19:13:54 +02:00
Philip Eisenlohr 5b0b0de6b4 assertion reports offense; fixed seeds for spherical and fiber 2020-09-20 12:22:41 -04:00
Philip Eisenlohr 3cc319ef08 removed debug print statement in test_util 2020-09-19 14:30:58 -04:00
Philip Eisenlohr 7cbd422ae3 fixed coprime error when encountering NaN 2020-09-19 13:38:32 -04:00
Martin Diehl 6f45203c98 first version of a pyaml based class for material configuration
pyaml is (again) actively maintained and the ruamel.pyaml API is
instable
2020-09-19 13:01:19 +02:00
Martin Diehl 0746a2f3a4 give visual feedback
in most tests, this is done manually
2020-09-19 08:33:15 +02:00
Martin Diehl c42511f101 small polishing 2020-09-18 16:32:59 +02:00
Martin Diehl f23b89f055 get rid of annoying warning during test 2020-09-18 16:30:22 +02:00
Martin Diehl c935ba1215 user friendly self reporting 2020-09-18 16:23:23 +02:00
Martin Diehl 1849ff0330 polishing 2020-09-18 15:03:51 +02:00
Martin Diehl e2cd3da295 remaning to_xx 2020-09-18 14:29:27 +02:00
Martin Diehl cdf3323774 Merge remote-tracking branch 'origin/development' into load-save-X 2020-09-18 14:21:43 +02:00
Martin Diehl ec7dbb4c9a do not store temp files 2020-09-18 14:21:30 +02:00
Franz Roters 190f8a82d4 Merge branch 'texture-components-in-rotation-class2' into 'development'
Texture components in rotation class2

See merge request damask/DAMASK!225
2020-09-18 13:31:42 +02:00
Vitesh ca689193f6 Merge branch 'new-random-style' into 'development'
new style for numpy random numbers

See merge request damask/DAMASK!224
2020-09-16 11:12:55 +02:00
Martin Diehl 70911b64ea Merge branch 'development' into texture-components-in-rotation-class2 2020-09-16 09:57:50 +02:00
Martin Diehl c71768a37a polishing 2020-09-16 06:33:17 +02:00
Philip Eisenlohr ed006d1a89 streamlined fiber/spherical component sampling 2020-09-15 19:12:30 -04:00
Philip Eisenlohr c6be6fe87f fixed spherical component sampling and testing 2020-09-15 18:40:05 -04:00
Philip Eisenlohr 82ed546ff7 Merge branch 'texture-components-in-rotation-class2' of magit1.mpie.de:damask/DAMASK into texture-components-in-rotation-class2 2020-09-15 18:14:19 -04:00
Philip Eisenlohr 0a34e342e4 fixed fiber component sampling and testing 2020-09-15 18:14:15 -04:00
Philip Eisenlohr d6378ec9bc shortened from_fiber_component algorithm 2020-09-15 16:34:19 -04:00
Martin Diehl ad2badd3be [skip ci] vectorized and simplified
based on Philips ideas. Test requires from_axis_angle fix
2020-09-15 22:13:28 +02:00
Martin Diehl 9e93e8b710 test for last commit 2020-09-15 19:59:03 +02:00
Philip Eisenlohr d02617c961 fixed normalization of multidimensional axes (from_Rodrigues, from_axis_angle) 2020-09-15 13:09:24 -04:00
Martin Diehl 3f823ca717 testing general case 2020-09-15 14:39:05 +02:00
Martin Diehl 18c38f1284 polishing 2020-09-15 13:49:44 +02:00
Martin Diehl 2a082b7983 methods for texture component calculations 2020-09-15 12:11:46 +02:00
Martin Diehl 82e41d92ce new style for numpy random numbers
https://numpy.org/doc/stable/reference/random/index.html?highlight=random#quick-start
https://albertcthomas.github.io/good-practices-random-number-generators/
2020-09-15 08:12:02 +02:00
Philip Eisenlohr 2114c51098 revert mistakenly made header length change in array-comparison 2020-09-15 01:47:26 -04:00
Philip Eisenlohr 96ad358f83 modified file reading/writing methods to load_X, save_X formalism 2020-09-15 01:14:05 -04:00
Martin Diehl b298962101 Merge branch 'development' into table-out-of-place-only 2020-09-14 08:06:44 +02:00
Martin Diehl f6758ecc28 table class operates out of place 2020-09-14 07:04:01 +02:00
Martin Diehl a5d5638e4a allow uncompressed files 2020-09-12 13:46:55 +02:00
Philip Eisenlohr 865c90d00b first check data type, then determine length of data... 2020-09-09 19:10:03 -04:00
Philip Eisenlohr 7d9a4c08ce Do not strictly require np.ndarrays for grid, size, or origin when not essential for functionality. 2020-09-10 00:59:40 +02:00
Philip Eisenlohr 9fb3fef4b0 changed British "normalise" to US "normalize" as we (should) follow US English everywhere else. 2020-09-08 10:39:31 -04:00
Philip Eisenlohr a4785ba562 modified file writing of geom and table to a general to_file() that takes a "format=" argument 2020-09-03 10:53:16 -04:00
Philip Eisenlohr d645849baf fixed remnant occurrences of .write() --> .to_file() 2020-09-02 11:32:40 -04:00
Philip Eisenlohr 6785062a10 Merge branch 'development' into 'vtk-to-file-method'
# Conflicts:
#   python/tests/test_VTK.py
2020-08-31 21:10:29 +02:00
Franz Roters 6986d20b32 Merge branch 'geom-out-of-place' into 'development'
Geom methods are now out-of-place, i.e. return an updated duplicate

See merge request damask/DAMASK!203
2020-08-31 12:39:01 +02:00
Martin Diehl 03b02ad641 typos/sentence 2020-08-29 16:06:10 +02:00
Martin Diehl c58693328e don't try to access folders that don't exist
this happened in the case when different types of output exist in
different phases, e.g.

Aluminum: generic, plastic, sources
Steel: generic, plastic

We are a little bit inconsistent because 'generic' and 'plastic' are
always created (even if empty) but 'sources' will only exist if it
contains output. In future, we should have only folders that actually
contain data
2020-08-28 12:45:41 +02:00
Franz Roters 9457435612 Merge branch 'polishing-for-release' into 'development'
Polishing for release

See merge request damask/DAMASK!206
2020-08-27 17:01:43 +02:00
Martin Diehl 0d5279863d avoid rounding errors related to rotation 2020-08-27 09:33:09 +02:00
Martin Diehl 94797f8325 ignore all kinds of FPE 2020-08-27 09:32:49 +02:00
Martin Diehl c5761831e2 more meaningful message
if add_xxx (Results) does not find matching datasets, inform the user
about this fact instead of saying
TypeError: object of type 'IMapUnorderedIterator' has no len()
2020-08-27 00:14:37 +02:00
Philip Eisenlohr c2191fd930 Make logic to mask (outside of) primitive more apparent (hopefully). 2020-08-27 00:06:52 +02:00
Martin Diehl 248ef8ef97 more tests
- invalid files
- scalar/array size,center,exponent for add_primitive
- rotation invariance for add primitive
2020-08-26 23:56:20 +02:00
Martin Diehl 229f6139c8 better user experience
- no meaningless warnings regarding floating point precision
- meaningful error message for invalid header
2020-08-26 23:54:56 +02:00
Philip Eisenlohr b9f1421c6b [skip ci] removed unnecessary line continuations "\" 2020-08-26 17:27:08 -04:00
Philip Eisenlohr 3f24d16603 renamed VTK.write() to VTK.to_file() 2020-08-26 16:15:15 -04:00
Philip Eisenlohr da46e5ea9a cannot use np.linalg.norm when dealing with exponent triple 2020-08-26 15:49:25 -04:00
Philip Eisenlohr 06b524d13e added 'iso' as possible lattice (with no symmetry) 2020-08-26 21:39:20 +02:00
Sharan Roongta 68c2908ba8 Merge branch 'rename-hdf5-output' into development 2020-08-26 12:34:56 +02:00
Martin Diehl fee21cbd9c more sensible tests 2020-08-25 17:17:49 +02:00
Martin Diehl bf401e56cf avoid name clash with damask.Geom 2020-08-25 09:56:24 +02:00
Martin Diehl 800dac5d01 correct type handling
no reason to calculate fill twice
2020-08-25 08:47:24 +02:00
Martin Diehl 96d4975fc4 using numpy functionality 2020-08-25 08:34:04 +02:00
Martin Diehl 51da632108 aiming at testing each individual statement 2020-08-25 07:49:56 +02:00
Martin Diehl 2d98325fa4 increasing test coverage 2020-08-25 01:21:17 +02:00
Martin Diehl 453f5a14c5 duplicated test (w/o wait for parallel out) 2020-08-25 00:53:05 +02:00
Martin Diehl 2751cdb6af support comments also in vtr 2020-08-25 00:40:14 +02:00
Martin Diehl 9a2ac31545 explicit is better then implicit 2020-08-24 23:35:46 +02:00
Martin Diehl 0ceba2a6d3 use central functionality 2020-08-24 23:28:26 +02:00
Martin Diehl 71e08ea66a small fixes:
- numpy has multiple float variants
- start renaming microstructure -> materialpoint where it does not hurt
- no need for type check if comparing against set of valid directions
  (or I miss some corner cases)
2020-08-24 23:23:47 +02:00