Martin Diehl
558745b548
explicitly require python3
...
on older systems, python3 tpyically exists but python2 is the defaul
2018-11-17 08:12:12 +01:00
Martin Diehl
50f880afd1
more scripts working with python3
2018-11-16 19:32:17 +01:00
Martin Diehl
9922f5f646
adjusted to python3
...
translate is more complicated now:
https://stackoverflow.com/questions/41708770
2018-11-16 12:23:45 +01:00
Martin Diehl
a3647cc587
more files with confirmed python3 compatibility
2018-11-16 09:03:12 +01:00
Martin Diehl
e9e3fef8d4
more python3 compatible scripts
2018-11-15 16:40:54 +01:00
Martin Diehl
a00d15b889
geom files are not labeled
2018-09-29 11:18:35 +02:00
Martin Diehl
8616a92309
unused module
2018-07-20 03:50:07 +02:00
Martin Diehl
24d1528e04
on the way to full python 3 compatibility
2018-07-20 03:31:46 +02:00
Martin Diehl
784ae28dbb
now working with python 3
2018-07-20 00:39:50 +02:00
Martin Diehl
9821654aae
iteritems does not exist in python3 anymore
...
items also works for python2 (might be slower though)
2018-07-19 16:16:10 +02:00
Philip Eisenlohr
1b12457fe6
vicinityOffset to specific triggering IDs instead of just any other ID
2018-03-30 11:48:02 -04:00
Philip Eisenlohr
0570a49ed5
fixed broken logic of restoring and preventing immutable microstructures
2018-03-27 16:53:49 -04:00
Philip Eisenlohr
2c3eae6bf0
fixed tests and bug for very small unit cube fractions when grid is also small
2018-03-07 18:59:27 -05:00
Philip Eisenlohr
32c34457c2
direct selection of valid seed coordinates within subfraction of unit cube instead of check and repeat
2018-03-07 17:45:22 -05:00
Philip Eisenlohr
f5177b6d2d
[skip ci] added option for non-periodic geometries
2018-02-20 10:20:35 -05:00
Martin Diehl
ba3a4e1254
indicating vectors with 1_, ..., n_ is standard now, "euler" also (more or less)
2018-02-05 17:34:08 +01:00
Martin Diehl
4dfb52c792
unfinished HDF5 should not be part of the next release
2017-11-21 10:23:50 +01:00
Franz Roters
eddc2a6acf
numpy actually not needed
2017-10-20 10:17:08 +02:00
Franz Roters
0c24f113c1
split overlong line
2017-10-20 10:14:15 +02:00
Franz Roters
26b8788c06
script to colocate 2D ang files into one §D file and optionally creat geometry and Paraview files
2017-10-20 09:36:57 +02:00
Philip Eisenlohr
ff072ae3c4
fixed bug (lost orgin info)
2017-08-23 15:14:22 -04:00
Philip Eisenlohr
9b6e092b5c
changed location where script appends itself to info trail
...
used to be sometimes at top, sometimes at bottom; now always after predecessor and above standard geom header
2017-08-23 14:09:33 -04:00
Philip Eisenlohr
f825e91bf1
script to straighten numbering in geom
2017-08-23 14:08:11 -04:00
Philip Eisenlohr
12fed7a38f
added option to use seed coordinates that are not normalized to a unit cube
2017-08-16 16:24:45 -04:00
Philip Eisenlohr
4eff7cfdd8
fixed wrong name for "pos" options destination
2017-08-15 16:11:21 -04:00
Philip Eisenlohr
1a423617c2
combined assignement of curvature exponent to deal with negative dimensions
2017-08-03 12:12:47 -04:00
Philip Eisenlohr
84a3885af8
negated option from "voxelspace" to "realspace".
...
introduced logarithmic sense of curvature exponents, additional polishing
2017-08-03 12:08:51 -04:00
Martin Diehl
e5af0630fe
gaussian filter (wrapper no ndimage)
2017-05-29 10:33:05 +02:00
Martin Diehl
691f338f5d
executable bit got lost
2017-05-19 09:33:58 +02:00
Franz Roters
ed85ce5bdb
changed argument handling in line with other scripts
...
now also works with stdin/out
2017-04-28 12:36:10 +02:00
Philip Eisenlohr
d35df1df49
Operate on MFD file to apply servo links, not client-server communication
...
Speed up by many orders of magnitude... 64 x 64 x 64 mesh less than a minute! Thanks Brendan!
2017-04-26 17:32:01 -04:00
Philip Eisenlohr
c34716a0da
modern form of croaking, added '*draw_automatic' as final output
2017-04-14 15:07:43 -04:00
Philip Eisenlohr
d1c2e2114d
switch auto drawing back on at end of pipeline
2017-04-13 19:00:19 -04:00
Martin Diehl
95a982e002
default type for muliple arguments (not extend) is tuple, not list
2017-04-13 12:54:26 +02:00
brendanvk
0d648b8de0
Change script to use resolution-independent coords
...
- Use the --voxelspace flag to get the old behavior
2017-03-07 20:37:30 -05:00
Martin Diehl
de57d9514e
removed code doubling and unused variables
2017-03-05 17:50:17 +01:00
brendanvk
f010aa97d9
Fix non-cube geometry structure, reduce memory
2017-02-24 22:30:04 -05:00
Brendan Vande Kieft
e5e6bed5de
Improve performance and generalize primitive shape
...
- Behavior is mostly unchanged, but the primitive may be shifted by a voxel when compared to the previous version, which had rounding issues near the edge of the primitive.
- exponent flag specifies the exponents that satisfy the equation x^e1 + y^e2 + z^e3 < 1. (1,1,1) gives an octahedron, (2,2,2) a sphere, and large values (1e10, 1e10, 1e10) gives a hexahedral box for any reasonable resolution. Mixing the two can produce a cylinder, (1e10, 2, 2) gives one with rotational symmetry about the x-axis.
2017-02-24 00:42:28 -05:00
Martin Diehl
a9d72c54b6
was not python3 conforming
2017-02-04 01:07:24 +01:00
Philip Eisenlohr
49eb7aa1be
fixed nasty ABS that caused wrong packing for 1,2,1,1,1,... and the like
2016-12-25 12:39:49 -05:00
Philip Eisenlohr
3628deb30e
changed option name from "no-config" to more common "without-config"
2016-12-23 17:46:16 -05:00
Philip Eisenlohr
d67be0e3f3
reduced memory footprint (substantially) by switching to 32bit precision
2016-12-08 23:36:19 -05:00
Philip Eisenlohr
c8f321356d
prefill immutable indices with closest mutable one
...
Retain only orginially immutable locations, not those where immutability bled into.
Changed threshold for change from 0.5 to 0.95 of max diffusedEnergy.
2016-12-08 09:47:20 -05:00
Philip Eisenlohr
9bb4f89e78
removed leftover debug output
2016-12-06 21:36:45 -05:00
Philip Eisenlohr
a2db7e9ba1
added option to suppress writing of material.config part in header
2016-12-06 21:36:25 -05:00
Philip Eisenlohr
cb95f3b244
fixed systematic drift of grain structure along -[1,1,1]
...
correction of periodic Gauss kernel extension, inclusion of ndimage.gaussian_filter alternative (same runtime as FFT), proper output handling of grids <3D
2016-11-30 09:39:13 -05:00
Philip Eisenlohr
40de6910b8
added --float option to translate real-valued grid data
2016-11-29 23:59:42 -05:00
Martin Diehl
a04968d43f
Merge branch 'development' into negativeRange
2016-11-01 17:20:56 +01:00
Martin Diehl
8593fb3ed7
unifying scripts
2016-10-31 22:11:16 +01:00
Philip Eisenlohr
4acfc73fa1
Merge branch 'Python3' into development
2016-10-31 11:28:40 -04:00
Philip Eisenlohr
94fcc9ad24
fixed language and syntax
2016-10-31 10:40:58 -04:00
Martin Diehl
8eb93a3274
python scripts now pack "a a-1 a-2 ... a-n" to "a to a-n"
2016-10-29 10:49:40 +02:00
Martin Diehl
aa3dc56949
fixed handling of last line (bug fix for second but last commit)
2016-10-29 10:30:42 +02:00
Martin Diehl
7e6e2e1c84
not using reserverd keyword "type"
2016-10-29 10:28:34 +02:00
Martin Diehl
1a56ad7a72
no logic change yet
2016-10-29 10:21:00 +02:00
Martin Diehl
6d9d25ea43
python 3 compatible and modernized
2016-10-28 15:40:17 +02:00
Martin Diehl
e43e37aae1
new style option setting
2016-10-27 23:06:17 +02:00
Martin Diehl
8a94f55a2e
python 3 compatibility
2016-10-25 06:44:12 +02:00
Martin Diehl
f78f89fb12
periodic microstructure needs to be updated per iteration (N).
...
now calling script twice gives the same result as one call with N=2.
results for N=1 are not affected
2016-10-05 15:24:37 +02:00
Martin Diehl
3abf0bc2d3
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-27 06:22:52 +02:00
Aritra Chakraborty
0ffd74d536
correct flag "data" for updated vtk_addRectilinearGridData
2016-09-26 16:32:39 -04:00
Aritra Chakraborty
1d06e82700
grain circumference identification
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fixed right most path selection criteria for grain circumference
2016-09-26 16:30:50 -04:00
Philip Eisenlohr
5345b42d71
improved robustness against faulty RCB data
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deals gracefully with duplicate segments, new option to export cleaned up RCB
2016-09-25 21:18:53 -04:00
Martin Diehl
e20623845a
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-22 16:14:07 +02:00
Martin Diehl
25103205a8
bug fix, adjust to options change of vtk_addXXXData
2016-09-21 22:01:16 +02:00
Martin Diehl
0f636bf6c3
not needed
2016-09-21 17:47:37 +02:00
Martin Diehl
4cd8fe7f36
indices should be integers (visible warning)
2016-09-21 17:45:23 +02:00
Martin Diehl
43457dcfc5
flexible selection of axes
2016-09-21 17:43:07 +02:00
Martin Diehl
4ccc0cf5a1
tool to mirror geometries (enforce periodicity on measured data)
2016-09-21 17:06:50 +02:00
Brendan Robert Vande Kieft
1180c8bb88
Fix calculation of interfaceEnergy
2016-09-15 17:36:43 -04:00
Philip Eisenlohr
eb69d6f4f1
Merged branch development into development
2016-09-14 19:42:15 -04:00
Philip Eisenlohr
59c1eee16b
added possibility to restrict seed coordinates to fraction of unit box
2016-09-14 19:42:05 -04:00
chen
804931db9e
force type cast index to int for numpy array
...
Force type casting indices into int array to avoid warning:
VisibleDeprecationWarning: using a non-integer number instead of an integer will result in an error in the future
For more info, see http://stackoverflow.com/questions/20084218/deprecation-warning-in-scikit-learn-svmlight-format-loader
2016-09-12 19:09:48 -04:00
Martin Diehl
c05307a273
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-03 14:35:53 +02:00
Zhuowen Zhao
f984f1ebea
enable floating point data and corrected counting of microstructures
2016-08-24 16:05:50 -04:00
Martin Diehl
7710f4d444
hybridIA (stand alone script and DAMASK) need standard ASCII table
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export of TSL OIM is similar to standard ASCII table, simply add correct header
including labels
2016-08-23 17:21:17 +02:00
Martin Diehl
2a0be6d232
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-07-27 08:57:13 +02:00
Martin Diehl
1195593233
some casting was needed, corrected header
2016-07-25 19:39:09 +02:00
Philip Eisenlohr
99963ca1dd
Merged branch development into development
2016-07-24 19:19:03 -04:00
Philip Eisenlohr
6f527b2af8
fixed upperCase typo in vtk_addPointcloudData call
2016-07-24 19:18:48 -04:00
Martin Diehl
cd63a92733
using python 2.7 has shebang will also work on mac without symlink
...
unless someone uses the 6 year old python 2.6, this should be save
2016-07-18 19:35:35 +02:00
Martin Diehl
1b30b186f4
rootRelation keyword was still used
2016-07-18 06:17:22 +02:00
Martin Diehl
40414c767c
like ang_toTable (not sure if both are needed anyway)
2016-07-15 21:03:10 +02:00
Martin Diehl
e8153ad196
corrected name
2016-07-15 15:48:53 +02:00
Martin Diehl
c792b73b4e
simplified
2016-07-15 14:52:48 +02:00
Martin Diehl
7d84b99710
bugfix: axis out of bounds for np.repeat, np.tile seems to be ok @Philip: pls check. autodoc friendly help
2016-07-15 10:34:17 +02:00
Philip Eisenlohr
9e8adf731b
fixed buggy a.all() call
...
removed squaring of Laguerre weights (no clue why we considered this a good idea in the first place)
2016-07-07 15:23:01 -04:00
Martin Diehl
be99018ce3
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-05-18 18:28:57 +02:00
Philip Eisenlohr
a7c15b4c00
avoided quoting of "N of x" and "a to b".
2016-05-17 11:29:31 -04:00
Martin Diehl
fa3d8fa460
adopted description/simplified
2016-05-17 11:05:50 +02:00
Martin Diehl
fa5ebdd46b
added correct metavar
2016-05-13 09:43:56 +02:00
Martin Diehl
61c93bdbf4
adjusted help message for automated documentation
2016-05-12 08:54:34 +02:00
Martin Diehl
a21e8cd863
usind explicitly python2 to run in environments with python 3 as default
2016-05-11 11:01:39 +02:00
Martin Diehl
d497503411
renamed options.coords/options.coordinates consistently to options.pos
2016-04-26 22:49:58 +02:00
Philip Eisenlohr
0f0ca8cd71
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-04-25 10:24:30 -05:00
Philip Eisenlohr
36f41341ec
Merge branch 'SimplifiedvtkRectilinear' into development
2016-04-25 10:23:50 -05:00
zhangc43
7ed4ce859a
remove obsolete geom_frombarucentric script for microstructure reconstruction
2016-04-25 09:24:05 -04:00
Martin Diehl
2eb7ad7432
polishing
2016-04-25 12:59:15 +02:00
Martin Diehl
7ce208019c
Merge branch 'development' into miscImprovements
2016-04-25 12:36:02 +02:00
Martin Diehl
469ec4b00e
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-04-25 12:33:06 +02:00