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DAMASK_EICMD
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1188 Commits

Author SHA1 Message Date
Philip Eisenlohr dbfd107b48 Add deformed configuration of given initial coordinates. 
Operates on periodic three-dimensional x,y,z-ordered data sets.
Replaces 3Dvisualize..!
 2016-04-14 17:53:48 -04:00
Philip Eisenlohr 170d377092 much improved algorithm to speed up grain identification. 2016-04-13 19:36:24 -04:00
Philip Eisenlohr 1994b5a4c1 removed debug messages 2016-04-13 19:29:04 -04:00
Philip Eisenlohr ea0bc80af9 modernized to reflect rectilinearGrid processing. Now supports vector data and in-place adding. 2016-04-13 18:03:40 -04:00
Philip Eisenlohr 0b09ce31db changed coordinate option to be consistent with rectilinearGrid. 2016-04-13 17:49:48 -04:00
Philip Eisenlohr feae2164fc polishing and now explicitly closing input table. 2016-04-13 17:48:49 -04:00
Philip Eisenlohr 6e2ca7d595 Removed hard requirement of 3D dataset. Fills in necessary dimensions. 2016-04-13 17:48:17 -04:00
Martin Diehl 70afa462b2 should work now with odd resolution as well 2016-04-11 20:25:24 +02:00
Martin Diehl 18f18aa4b9 detabbing 2016-04-11 19:55:55 +02:00
Martin Diehl 82063494fd adopted to new json format of paraview 
introduced "standard" colormaps for stress, strain, and orientation
file is now implicit the first argument without key (in line with other scripts)
 2016-04-11 19:47:07 +02:00
Martin Diehl f483c6a404 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements 2016-04-11 16:06:00 +02:00
Martin Diehl d278d86f9d long line 2016-04-11 13:24:43 +02:00
Martin Diehl b1d714581c Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements 2016-04-10 15:40:52 +02:00
Philip Eisenlohr b0496f20ca grouped command line options. 
removed functionality to add random second phase.
 2016-04-08 17:47:02 -04:00
Philip Eisenlohr 2354cd609a small polishing of help. 
added option to change output number format.
 2016-04-08 17:46:06 -04:00
Philip Eisenlohr 3e6d2710a3 added option to report probability density 2016-04-05 16:18:34 -04:00
Philip Eisenlohr e9ec497da6 fixed bug preventing files specified with full path to be treated properly 2016-04-05 16:17:55 -04:00
Philip Eisenlohr fcddf9345e added option for non-uniform weights 2016-03-27 17:54:49 -04:00
Philip Eisenlohr 7c72ede29d now works properly for labels specified as index (instead of string) 2016-03-27 16:29:45 -04:00
Philip Eisenlohr 0d93a47c71 Generate histogram of N bins in given data range. 2016-03-27 13:34:19 -04:00
Martin Diehl 97314619cc corrections 2016-03-26 19:59:05 +01:00
Martin Diehl 7423c1a06a not needed anymore 2016-03-24 18:47:11 +01:00
Martin Diehl 04d2148e61 will replace geom_fromAng (in combination with geom_fromTable) 2016-03-24 17:55:15 +01:00
Martin Diehl 809f03bef5 new printing for python3 and corrected help 2016-03-23 17:02:51 +01:00
Martin Diehl 466178cfc7 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-03-23 11:06:11 +01:00
Martin Diehl 900d2f7bf2 output follows damask.croak syntax 2016-03-23 11:05:36 +01:00
Philip Eisenlohr 0840a5f42e modernized orientation treatment and adopted slip systems from lattice.f90 2016-03-22 20:52:02 -04:00
Martin Diehl fafedd5cd6 Merge branch 'LargeFiles' into development 2016-03-22 15:45:42 +01:00
Philip Eisenlohr a41cd3df40 added "strict" option to reading microstructure from geom file. will now complain if data mismatches with grid. 2016-03-20 16:46:35 -04:00
Philip Eisenlohr 6865987ea7 restored option to output microstructure indices as one-dimensional list (not clear why that got lost!) 2016-03-20 15:01:47 -04:00
Philip Eisenlohr e39441f36b corrected usage message to tell about string comparison in filter condition 2016-03-17 19:02:30 -04:00
Aritra Chakraborty 0f78f1c747 possibility to treat floating point numbers as microstructure indices 2016-03-17 18:09:22 -04:00
Aritra Chakraborty 36c703ecd3 shortened excessively long lines 2016-03-16 15:20:31 -04:00
Aritra Chakraborty 3a267dc7ff FFT-based gradient calculation of scalar or vector field data (sibling of addCurl and addDivergence) 2016-03-16 15:02:38 -04:00
Aritra Chakraborty ce26ad06da polishing and introduction of locally derived grid in FFT subroutine 2016-03-16 15:01:22 -04:00
Philip Eisenlohr 6197e839c9 fixed missing file extension when adding in-place 2016-03-15 14:52:10 -04:00
Martin Diehl f857353e16 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-03-11 12:49:47 +01:00
Martin Diehl b0dedb8cbd =addOrientation can do the same (and more) 2016-03-09 19:02:28 +01:00
Philip Eisenlohr e9338200eb Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-03-09 12:28:52 -05:00
Philip Eisenlohr b933359f17 clarified text of error message complaining about wrong input dimension 2016-03-09 12:28:36 -05:00
Philip Eisenlohr 4dfd59a9e2 output complete microstructure and texture info instead of limiting to grainIDs used in geometry 2016-03-07 22:15:40 -05:00
Martin Diehl f13ba71f6e fixed typo 2016-03-04 17:24:13 +01:00
Martin Diehl 48233d2767 missing variable 2016-03-03 14:58:04 +01:00
Martin Diehl a51f2a29f6 cleaning 2016-03-03 14:53:55 +01:00
Martin Diehl 76a0a93c42 removed unneeded variables, fixed docstrings. missing variable jc in Barlat1989 from 46c33b0 2016-03-03 14:52:47 +01:00
Martin Diehl 3ff3bb1a5b pre processing finished 2016-03-03 14:44:51 +01:00
Martin Diehl 93d7643875 no long lines anymore and prospector is also happy 2016-03-03 14:44:29 +01:00
Martin Diehl 9fa49b8584 vtk files, mainly removed from vtk import * 2016-03-02 13:52:33 +01:00
Martin Diehl f7fedc4744 next bunch of accepted scripts 2016-03-02 13:50:57 +01:00
Martin Diehl 3ed3073eff more... 2016-03-02 11:29:07 +01:00
Martin Diehl e89923d6d3 next round 2016-03-02 11:11:20 +01:00
Martin Diehl 5d7e138a9b long line 2016-03-02 10:55:21 +01:00
Martin Diehl f77de7ac6e adjusting style (mainly long lines an "== None") 2016-03-02 10:52:24 +01:00
Martin Diehl c1dd5febd5 some more scripts passed 2016-03-01 22:27:21 +01:00
Martin Diehl 974b8cde41 some more syntax improvements 2016-03-01 22:13:57 +01:00
Martin Diehl 043f2faeb3 line too long 2016-03-01 21:59:59 +01:00
Martin Diehl 98476ea29c more improved scripts 2016-03-01 21:35:59 +01:00
Martin Diehl 9cfc27d295 line too long (132 lines max code, like Fortran, 159 including comments, Python standard) 2016-03-01 21:18:32 +01:00
Martin Diehl 80dc23d93d following "prospector -t pep8 -t pyflakes -t dodgy -t profile-validator -t pep257" 2016-03-01 21:11:43 +01:00
Martin Diehl e55d0ae3ca further attemps to make it conform with best python practice 2016-03-01 20:44:43 +01:00
Martin Diehl 6eb170bc07 still struggling with prospector 2016-03-01 19:37:31 +01:00
Martin Diehl 3b33d320b1 getting pyflakes to ignore 2016-03-01 19:06:00 +01:00
Martin Diehl 2a50c6bf86 using prospector --tool=dodgy --tool=pyflakes -M to find python flaws 2016-03-01 18:25:14 +01:00
Martin Diehl 7c9d344601 python files now report their version depending on VERSION file in $DAMASK_ROOT 2016-01-27 17:06:00 +00:00
Martin Diehl f693ead989 adding material.config to header 2015-12-28 16:36:26 +00:00
Martin Diehl c710709b1a example Makefile typically does not work, deleted 2015-12-15 14:34:03 +00:00
Martin Diehl 19ddbc9b21 fixed typo and simplified 2015-12-15 06:16:47 +00:00
Philip Eisenlohr 6de6b8b87f fixed wrong variable name when using pre-existing microstructures from table. 
added switch to skip effort for tolerance == 0.
 2015-12-09 14:13:19 +00:00
Martin Diehl d76fcb4be8 was giving wrong results 2015-12-05 21:34:39 +00:00
Martin Diehl 7eb7a4e8cd changed to use routine for symmetric matrices as ascii table cannot handle complex number anyway. further advantage: eigvals and eigvectors will be odered 2015-12-04 22:34:19 +00:00
Philip Eisenlohr 35202494c2 fixed issue caused by using -r twice as option label. 2015-12-04 04:33:23 +00:00
Philip Eisenlohr 784c78a3b0 removed defunct option to output labels as column vector. 2015-12-04 04:31:53 +00:00
Philip Eisenlohr 937634d703 added group shuffling (i.e. exchanging unique values) 2015-12-04 01:17:45 +00:00
Philip Eisenlohr 08014a7030 small polishing 2015-12-04 01:16:49 +00:00
Philip Eisenlohr 3fb1f02382 forgot $Id$ and line endings… 2015-12-03 22:33:38 +00:00
Philip Eisenlohr 2efc602854 Smooth geometry by selecting most frequent microstructure index within given stencil at each location. 2015-12-03 22:32:28 +00:00
Philip Eisenlohr 8f5c3b9ad7 small polishing. 2015-12-02 23:13:10 +00:00
Philip Eisenlohr 55b33e5597 added option “inplace” to directly modify VTK file instead of creating copy_added. 2015-12-02 23:10:14 +00:00
Martin Diehl f49091c952 addDeformedConfiguration without core module 2015-12-02 20:53:02 +00:00
Martin Diehl 6ecbd3ae56 makefile had problems with static flag, mentat spectral Box was still using table.croak 2015-12-02 20:02:19 +00:00
Martin Diehl 0ffcb7fdaf cleaning 2015-12-01 16:37:20 +00:00
Martin Diehl f61f87e6d0 updated reference results (visual impression much better now) for geom_fromTable and silenced verbose debug output per default since it's causing problems when piping to file 2015-11-30 16:22:59 +00:00
Philip Eisenlohr cee9a345b7 added option to label microstructure. 
updated to most recent asciitable/damask.util infrastructure.
 2015-11-20 16:30:55 +00:00
Philip Eisenlohr 0db4a7fad0 added debug messages. 
added background message for estimated time (+ grain info).
fixed functionality—finally works as intended (lump orientations within threshold).
 2015-11-20 16:27:57 +00:00
Martin Diehl 40c2a5dd6d differentiate name for undeformed and deformed coordinates makes sense. Still not happy with the naming though 2015-11-20 15:58:32 +00:00
Martin Diehl 24382ed827 unified options to enable automated parsing for documentation 2015-11-16 10:52:56 +00:00
Martin Diehl 1336c8d0e6 now using default 2D output for geometry 2015-11-16 09:54:39 +00:00
Martin Diehl 302178ebb4 some trouble since clean was already in PETSc rules 2015-11-14 09:47:18 +00:00
Philip Eisenlohr 4c51c15795 changed option to —coordinates. 
gracefully extend points to be 3D.
 2015-11-14 01:52:31 +00:00
Martin Diehl 4b85941a94 some comments 2015-11-11 19:51:34 +00:00
Martin Diehl 4ca566efa8 geom_rotate: rotates a geometry 2015-11-11 19:51:17 +00:00
Philip Eisenlohr 2c9f9981e2 polishing of addRectiliearGridData. 
subsumed functionality of addVoxelgridData into it.
 2015-11-10 01:49:32 +00:00
Philip Eisenlohr 434bf2413e simplified if—else with a = b if c else d 2015-11-10 01:35:26 +00:00
Philip Eisenlohr ccf7530121 added output selection “rodrigues” 2015-11-10 01:34:10 +00:00
Chen Zhang fe1dbf2ea0 output file name now contains both position and mode. 
e.g. ${prefix}_ipinitialcoord(point).vtr
 2015-11-03 21:44:36 +00:00
Philip Eisenlohr ad06fc1a77 fixed buggy mapIncremental behavior for anything else than averaging (the standard case luckily…) 2015-10-27 20:16:24 +00:00
Martin Diehl 072be9c1bb help now working if no mentat release present. 
improved style
 2015-10-26 19:34:44 +00:00
Martin Diehl 41f1994569 new style and test for grain growth 2015-10-26 17:59:36 +00:00
Martin Diehl ebf20f2ebc unified style and other minor improvements 2015-10-15 19:51:27 +00:00
Martin Diehl e72ae63873 geom canvas crashed for some parameters, now giving error message. table class now handles dismiss correctly 2015-10-14 21:35:56 +00:00