Commit Graph

310 Commits

Author SHA1 Message Date
Philip Eisenlohr 15963391aa inSST and inversePole now can consider the secondary SST related to improper rotations. Secondary SST is immediately neighboring (positively rotated around Z). 2015-10-22 21:15:15 +00:00
Martin Diehl 31579b3f88 tolerances caused problems, introduced new funtionality based on np.allclose 2015-10-22 05:59:11 +00:00
Franz Roters b676ed0085 support for Marc 2010 was dropped a long time ago 2015-10-20 13:32:48 +00:00
Franz Roters a087eedd54 added support for Marc2014.2 (so far installed on maws14 only) 2015-10-20 13:25:59 +00:00
Martin Diehl e72ae63873 geom canvas crashed for some parameters, now giving error message. table class now handles dismiss correctly 2015-10-14 21:35:56 +00:00
Philip Eisenlohr 7df8d95cd0 slightly cleaner way of dealing with disorientation calculation when axis not required to fall into SST. 2015-10-09 13:03:10 +00:00
Philip Eisenlohr 26f8f74310 undone np.unique of columns since this would introduce the unwanted side-effect of (messily) sorting columns. user expects to get sorting as provided through command line. 2015-10-09 12:55:30 +00:00
Martin Diehl 4c46d155ec line continuation not needed 2015-10-09 10:24:17 +00:00
Martin Diehl 61090c955d removed code doubling 2015-10-09 05:51:58 +00:00
Martin Diehl 851d2e1b2c prevent to load columns more than once\n @Philip: OK? 2015-10-08 17:47:00 +00:00
Philip Eisenlohr 3b0dc374bb now using ‘emph’ in reporting function instead of code doubling. 2015-10-07 01:07:56 +00:00
Philip Eisenlohr 801d57af4c fixed buggy behavior caused by assigning string instead of single-item list to readBuffer. 2015-10-07 01:03:26 +00:00
Martin Diehl 6e05082133 might be needed in multicore env 2015-10-06 18:01:31 +00:00
Martin Diehl 95a8b54996 buggy behavior when read buffer contained string (len > 0, but no pop() method)
@Philip: please check if intended behavior
2015-10-06 16:19:37 +00:00
Philip Eisenlohr e089e60202 transparently deal with one-dimensional array output 2015-09-30 18:44:54 +00:00
Philip Eisenlohr b2243ae3c1 small polishing 2015-09-29 22:25:57 +00:00
Martin Diehl 948aa0c544 was missing in last commit 2015-09-24 10:01:15 +00:00
Philip Eisenlohr 2aa1073949 relocated “croak” and “report” functionality to here. needs to be altered in all scripts that still use the ASCIItable class for those… 2015-09-22 21:00:18 +00:00
Martin Diehl 6a3a0f3859 allow asciitable to use file handle instead of string (following e.g. numpy.genfromtxt) 2015-09-16 19:44:11 +00:00
Harsha Phukan 24bd3a6eee added “non-strict” version to find disorientation, neglecting the search for axis falling into SST (has linear instead of quadratic effort). 2015-09-16 17:07:02 +00:00
Harsha Phukan 8a05584924 bg.message does not require symbol selection anymore—will pick random if nothing specified… 2015-09-15 19:02:00 +00:00
Martin Diehl 5f9fae1b75 simplified reporting using "emph" 2015-09-11 12:55:43 +00:00
Philip Eisenlohr 31bb27268c removed dangerous property overload (.asQuaternion() —> .quaternion) 2015-09-09 22:37:18 +00:00
Tias Maiti 7495b33b68 label_dimension dropped indices >9 due to buggy string comparison… 2015-09-08 23:12:45 +00:00
Chen Zhang ba418a5c97 reflect recent changes in orientation class 2015-09-03 16:50:49 +00:00
Tias Maiti eb5ad7528f fixed bug in asEulers() output in degrees 2015-08-29 23:22:32 +00:00
Martin Diehl 6848d83d13 behavior of IO_stringPos was unsafe in some situations, also took the chance to rename the variables used in its context to a more meaningful name.
functions in the core module are not used, including kdTree
2015-08-28 07:38:48 +00:00
Chen Zhang f4145dd505 add numpy header location in the setup script. 2015-08-25 18:06:36 +00:00
Philip Eisenlohr 636eb8a087 multiple fixes and improvements.
1) asAngleAxis got “degrees” switch, fixed buggy output for negative angles, now angles are always non-negative.
2) removed rotateBys.
3) asEulers corrected for cases w==z or x==y.
4) added method symmetryQuats.
5) calculation of disorientation (finally) fixed, returns tuple (disorientation quaternion, index symA, index symB, boolean whether A—>B or B—>A).
2015-08-24 13:39:09 +00:00
Philip Eisenlohr 858fe7e897 prevent closing sys.stdin or sys.stdout 2015-08-24 00:40:52 +00:00
Philip Eisenlohr 7ceb7f7614 fixed problem when reading single label through data_readArray 2015-08-23 23:18:34 +00:00
Philip Eisenlohr 681b7f0831 added ‘emph’ method.
additional background message animations.
2015-08-22 17:02:49 +00:00
Philip Eisenlohr 6ba76c3832 introduced public line object holding currently read data line as string.
label_append now has option to overwrite (reset=True) labels that were read originally.
data_writeArray maintains full significant digit representation as default.
2015-08-20 19:38:06 +00:00
Martin Diehl 22c52fbd32 cleaned core module 2015-08-12 18:48:09 +00:00
Philip Eisenlohr 93dd9f5c09 bug fix regarding self.tmpext.
added check for access rights when overwriting original file.
2015-08-12 18:41:44 +00:00
Martin Diehl a29240242b standard name for numpy is np 2015-08-12 18:32:28 +00:00
Philip Eisenlohr 64515d7aca simplified interface:
name == None: read from stdin
outname == None and not readonly mode: do in-place substitution of name (with transparent file renaming upon table.close)
2015-08-12 17:42:38 +00:00
Martin Diehl f9348398ce removed old file, added possibility to normalise euler angels to standard range, added svn properties 2015-08-12 15:15:33 +00:00
Martin Diehl 35863e0229 fixed averageDown and made it's test running 2015-08-12 13:43:05 +00:00
Martin Diehl 36caddcc24 adjusted to new ASCII table file handling 2015-08-12 12:51:47 +00:00
Chen Zhang 3991813595 fix syntax error regarding several static method 2015-08-10 21:08:00 +00:00
Philip Eisenlohr d4e748b654 outsourced multiple repetitive functions into ASCIItable class.
changed ASCIItable API from file-handles to filenames.

adopted these changes in pre and post processing scripts.

unified behavior and look.

fixed bugs here and there.

improved functionality.
2015-08-07 19:03:26 +00:00
Chen Zhang dfe0991134 adding property alias for Orientation class to simplify syntax. 2015-08-04 20:38:06 +00:00
Chen Zhang 1ec3639cf1 use pure python implementation of orientation class as default 2015-08-02 17:49:38 +00:00
Chen Zhang fbb7f9b11b remove deprecated function from math.f90 2015-07-29 20:49:42 +00:00
Chen Zhang 9287d6f15f make the interface for Symmetry class compatible with pure python version. 2015-07-29 19:39:30 +00:00
Chen Zhang 5f74f3e95e add Cython version of orientation module to provide faster orientation calculation. 2015-07-29 19:23:06 +00:00
Chen Zhang 70606770d0 correct two typos in Quaternion class 2015-07-28 20:10:27 +00:00
Chen Zhang bfedf037c6 add asAngleAxis() to Orientation class 2015-07-22 21:49:24 +00:00
Chen Zhang 08f4495721 changed readArray default behavior to reading always scalars when columns are referenced by number 2015-07-21 20:44:40 +00:00