also remove intermediate submodul files
This commit is contained in:
Franz Roters
parent
defe0a8dd8
commit
3150673f2d
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@ -49,4 +49,5 @@ echo "program: $program"
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exit 1
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}
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/bin/rm $userobj
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/bin/rm $DIRJOB/*.mod
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/bin/rm $DIRJOB/*.mod
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/bin/rm $DIRJOB/*.smod
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@ -49,4 +49,5 @@ echo "program: $program"
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exit 1
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}
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/bin/rm $userobj
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/bin/rm $DIRJOB/*.mod
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/bin/rm $DIRJOB/*.mod
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/bin/rm $DIRJOB/*.smod
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@ -49,4 +49,5 @@ echo "program: $program"
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exit 1
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}
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/bin/rm $userobj
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/bin/rm $DIRJOB/*.mod
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/bin/rm $DIRJOB/*.mod
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/bin/rm $DIRJOB/*.smod
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@ -63,7 +63,7 @@
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# =1, element storage out-of-core #
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# -dll run marc using shared library libmarc.so and exe_marc #
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# =1, used #
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# =2, do not free streaming input memory #
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# =2, do not free streaming input memory #
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# =3, run with marc input deck #
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# -trk run marc for post-tracking #
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# -gpuid run marc using GPGPU capability #
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@ -177,16 +177,16 @@ fi
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# MARC_MODE i8
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# it can also be set by the environmental variable MARC_INTEGER_SIZE
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# and by the command line option "-mo"
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#
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#
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mode=
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modeerror=
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modeoption=
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if test -f $DIRSCRIPT/run_marc_defaults; then
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line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
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if test "$line" = "MARC_MODE"; then
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echo
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echo
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echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
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echo
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echo
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line=
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fi
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line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
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@ -203,7 +203,7 @@ fi
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if test -f $HOME/run_marc_defaults; then
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line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
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if test "$line" = "MARC_MODE"; then
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echo
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echo
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echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
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echo
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line=
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@ -226,7 +226,7 @@ if test -z "$mode" ; then
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mode=i8
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fi
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case $mode in
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i4)
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i4)
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modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
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modeoption=error
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echo $modeerror
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@ -246,7 +246,7 @@ for arg in $* ; do
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if $setmode ; then
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mode=$arg
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case $mode in
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i4)
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i4)
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modeerror="bad value for mode option; only i8 is supported."
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modeoption=error
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echo
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@ -269,7 +269,7 @@ for arg in $* ; do
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setmode=false
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fi
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if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
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echo
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echo
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echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
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echo
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setmode=true
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@ -333,7 +333,7 @@ case "`echo '\c'`" in
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;;
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esac
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#
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#
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# Variables for the MARC environment
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#
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@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
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export LD_LIBRARY_PATH
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export LD_LIBRARY64_PATH
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export LD_LIBRARYN32_PATH
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atexit() {
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kill -15 $$
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#
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@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
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# or in the user's home directory
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# format:
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# MARC_MPI <mpiversion>
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#
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#
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value=
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file=
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if test -f $DIRSCRIPT/run_marc_defaults; then
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@ -523,7 +523,7 @@ if test -n "$value"; then
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notok=false
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fi
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done
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if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
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if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
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notok=false
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fi
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if $notok; then
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@ -543,7 +543,7 @@ if test -n "$value"; then
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fi
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fi
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fi
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#
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#
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#
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# allow scratch directory to be specified with environmental variable
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# MARCSCRATCH
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@ -613,7 +613,7 @@ do
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*)
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DIRJID=`pwd`/$DIRJID
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;;
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esac
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esac
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;;
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-r* | -R*)
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rid=`$BASENAME $value .t08`
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@ -624,7 +624,7 @@ do
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*)
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DIRRID=`pwd`/$DIRRID
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;;
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esac
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esac
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;;
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-si* | -SI*)
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sid=$value
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@ -635,7 +635,7 @@ do
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*)
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DIRSID=`pwd`/$DIRSID
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;;
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esac
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esac
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;;
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-pi* | -PI*)
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if test -f $value.t19
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@ -651,7 +651,7 @@ do
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*)
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DIRPID=`pwd`/$DIRPID
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;;
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esac
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esac
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;;
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-bdf | -BDF)
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makebdf=1
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@ -665,7 +665,7 @@ do
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*)
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DIRDID=`pwd`/$DIRDID
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;;
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esac
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esac
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;;
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-vf | -VF)
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vid=`$BASENAME $value .vfs`
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@ -676,7 +676,7 @@ do
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*)
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DIRVID=`pwd`/$DIRVID
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;;
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esac
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esac
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;;
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-u* | -U*)
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user=$value
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@ -847,7 +847,7 @@ do
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*)
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DIRSCR=`pwd`/$DIRSCR
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;;
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esac
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esac
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;;
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-ho* | -HO*)
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host=$value
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@ -898,7 +898,7 @@ fi
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if test $nsolver -gt 0
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then
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if test $nsolver -gt $nprocd
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if test $nsolver -gt $nprocd
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then
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nprocd=$nsolver
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fi
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@ -934,7 +934,7 @@ fi
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ntprint=$nt
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nteprint=$nte
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# copy from -nprocd[s]
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if test $nprocdddm -gt 1
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if test $nprocdddm -gt 1
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then
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nteprint=$nprocdddm
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fi
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@ -943,7 +943,7 @@ if test $nte -ne 0
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then
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nteprint=$nte
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fi
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# check for minimum 1 threads per processes for DDM
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# check for minimum 1 threads per processes for DDM
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if test $nprocdddm -gt 1
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then
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if test $nteprint -lt $nprocdddm
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@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
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# deprecate -nthread option at arugment of marc
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nt=0
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# Reset nprocdddmm, nsolver and threads if not given.
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if test $nprocdddm -eq 0
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then
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if test $nprocdddm -eq 0
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then
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nprocdarg=
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fi
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if test $nprocdddm -eq 0
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then
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fi
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if test $nprocdddm -eq 0
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then
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nprocdddmprint=
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fi
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if test $nprocdddm -eq 0
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then
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fi
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if test $nprocdddm -eq 0
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then
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nprocdddm=
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fi
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fi
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nsolverprint=$nsolver
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if test $nsolver -eq 0
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then
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if test $nsolver -eq 0
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then
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nsolverprint=
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fi
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fi
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# end of threads setting.
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gpuoption=
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if test "$gpuids" = "" ; then
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@ -1030,7 +1030,7 @@ else
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MARCCUDALIBS=$MARCCUDALIBS2
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export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
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fi
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# Linux 64 + HPMPI, Below code is taken from include_linux64
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# Linux 64 + HPMPI, Below code is taken from include_linux64
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if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
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then
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export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
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@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
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fi
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if test "$progdll"; then
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/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
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/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
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rmdll=yes
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pathdll=yes
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progdll=${progdll}_$marcdll
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@ -1093,14 +1093,14 @@ while test forever; do
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if test $nprocdddm -gt 1 -a $icreated -eq 0; then
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if test ! -f $DIRJID/1$jid$dotdat; then
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if test "$jid" != "" ; then
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error="$error
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error="$error
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input file $DIRJID/1$jid$dotdat not accessible"
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fi
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fi
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else
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if test ! -f $DIRJID/$jid$dotdat; then
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if test "$jid" != "" ; then
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error="$error
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error="$error
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input file $DIRJID/$jid$dotdat not accessible"
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fi
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fi
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@ -1108,7 +1108,7 @@ fi
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if test $nprocd -gt 1; then
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if test "$host" ; then
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if test ! -f $host; then
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error="$error
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error="$error
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host name file $host not accessible"
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fi
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fi
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@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
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notok=false
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fi
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done
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if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
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if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
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notok=false
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fi
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if $notok; then
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error="$error
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error="$error
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incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
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fi
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fi
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@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
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then
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if test $nauto -gt 2
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then
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error="$error
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error="$error
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incorrect option for auto restart "
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fi
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fi
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@ -1299,7 +1299,7 @@ incorrect option for auto restart "
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then
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if test $ndcoup -gt 3
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then
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error="$error
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error="$error
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incorrect option for contact decoupling "
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fi
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fi
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@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
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then
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if test $ndytran -gt 1
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then
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error="$error
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error="$error
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incorrect option for Marc-Dytran Switch "
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fi
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fi
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@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
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then
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if test ! -x $MARC_BIN/$exefile
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then
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error="$error
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error="$error
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incorrect option for -mpi option: $MARC_MPITYPE "
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fi
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fi
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@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
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*)
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DIRJID=`pwd`/$DIRJID
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;;
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esac
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esac
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fi
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$ECHO "User subroutine name ($user)? $ECHOTXT"
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read value
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@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
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*)
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user=`pwd`/$user
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;;
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esac
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esac
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usernoext=$user
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usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
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usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
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@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
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*)
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DIRVID=`pwd`/$DIRVID
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;;
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esac
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esac
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;;
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esac
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fi
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@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
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fi
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if test $nsolver -gt 0
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then
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if test $nsolver -gt $nprocd
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if test $nsolver -gt $nprocd
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then
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nprocd=$nsolver
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fi
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@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
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then
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qid=$value
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fi
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case $qid in
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case $qid in
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s* | S* | l* | L* | v* | V* )
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$ECHO "Queue priority ($priority)? $ECHOTXT"
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read value
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@ -2039,42 +2039,42 @@ esac
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done
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#
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if test $nt -eq 0
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then
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if test $nt -eq 0
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||||
then
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ntarg=
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fi
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if test $nt -eq 0
|
||||
then
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fi
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if test $nt -eq 0
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then
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ntprint=
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fi
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if test $nt -eq 0
|
||||
then
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||||
fi
|
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if test $nt -eq 0
|
||||
then
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nt=
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fi
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|
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if test $nte -eq 0
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||||
then
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if test $nte -eq 0
|
||||
then
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ntearg=
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fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
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||||
then
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nteprint=
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||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
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||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
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||||
fi
|
||||
#
|
||||
|
|
@ -2327,7 +2327,7 @@ fi
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|||
execpath=$usernoext.marc
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usersub=1
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||||
fi
|
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export execpath
|
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export execpath
|
||||
execname=`$BASENAME $execpath`
|
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|
||||
if test "$host"
|
||||
|
|
@ -2360,7 +2360,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2474,9 +2474,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
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||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2560,7 +2560,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2569,7 +2569,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2729,7 +2729,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2859,7 +2859,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2870,7 +2870,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3267,6 +3267,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3309,7 +3310,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3318,10 +3319,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3389,15 +3390,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3579,7 +3580,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3647,7 +3649,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3696,7 +3698,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3913,7 +3915,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4055,7 +4058,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -63,7 +63,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -177,16 +177,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -203,7 +203,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -613,7 +613,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -624,7 +624,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -635,7 +635,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -651,7 +651,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -665,7 +665,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -676,7 +676,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -847,7 +847,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -898,7 +898,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -934,7 +934,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1030,7 +1030,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1108,7 +1108,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $nauto -gt 2
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for auto restart "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2039,42 +2039,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2327,7 +2327,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2360,7 +2360,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2474,9 +2474,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2560,7 +2560,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2569,7 +2569,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2729,7 +2729,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2859,7 +2859,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2870,7 +2870,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3267,6 +3267,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3309,7 +3310,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3318,10 +3319,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3389,15 +3390,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3579,7 +3580,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3647,7 +3649,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3696,7 +3698,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3913,7 +3915,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4055,7 +4058,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -63,7 +63,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -177,16 +177,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -203,7 +203,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -613,7 +613,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -624,7 +624,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -635,7 +635,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -651,7 +651,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -665,7 +665,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -676,7 +676,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -847,7 +847,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -898,7 +898,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -934,7 +934,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1030,7 +1030,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1108,7 +1108,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $nauto -gt 2
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for auto restart "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2039,42 +2039,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2327,7 +2327,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2360,7 +2360,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2474,9 +2474,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2560,7 +2560,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2569,7 +2569,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2729,7 +2729,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2859,7 +2859,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2870,7 +2870,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3267,6 +3267,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3309,7 +3310,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3318,10 +3319,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3389,15 +3390,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3579,7 +3580,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3647,7 +3649,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3696,7 +3698,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3913,7 +3915,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4055,7 +4058,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
|||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.smod
|
||||
|
|
|
|||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
|||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.smod
|
||||
|
|
|
|||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
|||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.smod
|
||||
|
|
|
|||
|
|
@ -63,7 +63,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -177,16 +177,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -203,7 +203,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -613,7 +613,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -624,7 +624,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -635,7 +635,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -651,7 +651,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -665,7 +665,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -676,7 +676,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -847,7 +847,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -898,7 +898,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -934,7 +934,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1030,7 +1030,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1108,7 +1108,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $nauto -gt 2
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for auto restart "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2039,42 +2039,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2327,7 +2327,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2360,7 +2360,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2474,9 +2474,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2560,7 +2560,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2569,7 +2569,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2729,7 +2729,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2859,7 +2859,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2870,7 +2870,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3267,6 +3267,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3309,7 +3310,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3318,10 +3319,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3389,15 +3390,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3579,7 +3580,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3647,7 +3649,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3696,7 +3698,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3913,7 +3915,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4055,7 +4058,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -63,7 +63,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -177,16 +177,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -203,7 +203,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -613,7 +613,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -624,7 +624,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -635,7 +635,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -651,7 +651,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -665,7 +665,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -676,7 +676,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -847,7 +847,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -898,7 +898,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -934,7 +934,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1030,7 +1030,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1108,7 +1108,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $nauto -gt 2
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for auto restart "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2039,42 +2039,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2327,7 +2327,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2360,7 +2360,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2474,9 +2474,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2560,7 +2560,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2569,7 +2569,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2729,7 +2729,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2859,7 +2859,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2870,7 +2870,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3267,6 +3267,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3309,7 +3310,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3318,10 +3319,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3389,15 +3390,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3579,7 +3580,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3647,7 +3649,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3696,7 +3698,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3913,7 +3915,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4055,7 +4058,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -63,7 +63,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -177,16 +177,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -203,7 +203,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -613,7 +613,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -624,7 +624,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -635,7 +635,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -651,7 +651,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -665,7 +665,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -676,7 +676,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -847,7 +847,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -898,7 +898,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -934,7 +934,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1030,7 +1030,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1108,7 +1108,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $nauto -gt 2
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for auto restart "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2039,42 +2039,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2327,7 +2327,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2360,7 +2360,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2474,9 +2474,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2560,7 +2560,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2569,7 +2569,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2729,7 +2729,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2859,7 +2859,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2870,7 +2870,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3267,6 +3267,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3309,7 +3310,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3318,10 +3319,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3389,15 +3390,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3579,7 +3580,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3647,7 +3649,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3696,7 +3698,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3913,7 +3915,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4055,7 +4058,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
|||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.smod
|
||||
|
|
|
|||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
|||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.smod
|
||||
|
|
|
|||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
|||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.smod
|
||||
|
|
|
|||
|
|
@ -62,7 +62,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -176,16 +176,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -202,7 +202,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -225,7 +225,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -245,7 +245,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -268,7 +268,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -332,7 +332,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -387,7 +387,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -497,7 +497,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -522,7 +522,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -542,7 +542,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -612,7 +612,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -623,7 +623,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -634,7 +634,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -650,7 +650,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -664,7 +664,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -675,7 +675,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -777,7 +777,7 @@ do
|
|||
;;
|
||||
-au* | -AU*)
|
||||
nauto=$value
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -au is no longer supported and will be ignored
|
||||
echo
|
||||
;;
|
||||
|
|
@ -849,7 +849,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -900,7 +900,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -936,7 +936,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -945,7 +945,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -1000,24 +1000,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1032,7 +1032,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1061,7 +1061,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1095,14 +1095,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1110,7 +1110,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1224,11 +1224,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1293,7 +1293,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1301,7 +1301,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1309,7 +1309,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1626,7 +1626,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1644,7 +1644,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1767,7 +1767,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1809,7 +1809,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1959,7 +1959,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2017,42 +2017,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2305,7 +2305,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2338,7 +2338,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2452,9 +2452,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2538,7 +2538,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2547,7 +2547,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2707,7 +2707,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2731,23 +2731,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2787,7 +2787,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2837,7 +2837,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2848,7 +2848,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2953,7 +2953,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3241,6 +3241,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3283,7 +3284,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3292,10 +3293,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3363,15 +3364,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3553,7 +3554,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3573,6 +3574,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3621,7 +3623,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3670,7 +3672,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3887,7 +3889,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3907,6 +3909,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3946,7 +3949,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4029,7 +4032,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -62,7 +62,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -176,16 +176,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -202,7 +202,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -225,7 +225,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -245,7 +245,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -268,7 +268,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -332,7 +332,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -387,7 +387,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -497,7 +497,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -522,7 +522,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -542,7 +542,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -612,7 +612,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -623,7 +623,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -634,7 +634,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -650,7 +650,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -664,7 +664,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -675,7 +675,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -777,7 +777,7 @@ do
|
|||
;;
|
||||
-au* | -AU*)
|
||||
nauto=$value
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -au is no longer supported and will be ignored
|
||||
echo
|
||||
;;
|
||||
|
|
@ -849,7 +849,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -900,7 +900,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -936,7 +936,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -945,7 +945,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -1000,24 +1000,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1032,7 +1032,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1061,7 +1061,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1095,14 +1095,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1110,7 +1110,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1224,11 +1224,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1293,7 +1293,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1301,7 +1301,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1309,7 +1309,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1626,7 +1626,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1644,7 +1644,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1767,7 +1767,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1809,7 +1809,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1959,7 +1959,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2017,42 +2017,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2305,7 +2305,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2338,7 +2338,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2452,9 +2452,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2538,7 +2538,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2547,7 +2547,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2707,7 +2707,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2731,23 +2731,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2787,7 +2787,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2837,7 +2837,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2848,7 +2848,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2953,7 +2953,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3241,6 +3241,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3283,7 +3284,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3292,10 +3293,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3363,15 +3364,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3553,7 +3554,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3573,6 +3574,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3621,7 +3623,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3670,7 +3672,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3887,7 +3889,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3907,6 +3909,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3946,7 +3949,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4029,7 +4032,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -62,7 +62,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -176,16 +176,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -202,7 +202,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -225,7 +225,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -245,7 +245,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -268,7 +268,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -332,7 +332,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -387,7 +387,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -497,7 +497,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -522,7 +522,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -542,7 +542,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -612,7 +612,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -623,7 +623,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -634,7 +634,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -650,7 +650,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -664,7 +664,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -675,7 +675,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -777,7 +777,7 @@ do
|
|||
;;
|
||||
-au* | -AU*)
|
||||
nauto=$value
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -au is no longer supported and will be ignored
|
||||
echo
|
||||
;;
|
||||
|
|
@ -849,7 +849,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -900,7 +900,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -936,7 +936,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -945,7 +945,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -1000,24 +1000,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1032,7 +1032,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1061,7 +1061,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1095,14 +1095,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1110,7 +1110,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1224,11 +1224,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1293,7 +1293,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1301,7 +1301,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1309,7 +1309,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1626,7 +1626,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1644,7 +1644,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1767,7 +1767,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1809,7 +1809,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1959,7 +1959,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2017,42 +2017,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2305,7 +2305,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2338,7 +2338,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2452,9 +2452,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2538,7 +2538,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2547,7 +2547,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2707,7 +2707,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2731,23 +2731,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2787,7 +2787,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2837,7 +2837,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2848,7 +2848,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2953,7 +2953,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3241,6 +3241,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3283,7 +3284,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3292,10 +3293,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3363,15 +3364,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3553,7 +3554,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3573,6 +3574,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3621,7 +3623,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3670,7 +3672,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3887,7 +3889,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3907,6 +3909,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3946,7 +3949,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4029,7 +4032,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
Loading…
Reference in New Issue