From 3150673f2d1c8d04cac840a7f78da63836d20a9a Mon Sep 17 00:00:00 2001 From: Franz Roters Date: Wed, 8 Jul 2020 14:03:10 +0200 Subject: [PATCH] also remove intermediate submodul files --- .../2018.1/Marc_tools/comp_damask_hmp | 3 +- .../2018.1/Marc_tools/comp_damask_lmp | 3 +- .../2018.1/Marc_tools/comp_damask_mp | 3 +- .../2018.1/Marc_tools/run_damask_hmp | 209 +++++++++--------- .../2018.1/Marc_tools/run_damask_lmp | 209 +++++++++--------- .../2018.1/Marc_tools/run_damask_mp | 209 +++++++++--------- .../2018/Marc_tools/comp_damask_hmp | 3 +- .../2018/Marc_tools/comp_damask_lmp | 3 +- .../2018/Marc_tools/comp_damask_mp | 3 +- .../2018/Marc_tools/run_damask_hmp | 209 +++++++++--------- .../2018/Marc_tools/run_damask_lmp | 209 +++++++++--------- .../2018/Marc_tools/run_damask_mp | 209 +++++++++--------- .../2019/Marc_tools/comp_damask_hmp | 3 +- .../2019/Marc_tools/comp_damask_lmp | 3 +- .../2019/Marc_tools/comp_damask_mp | 3 +- .../2019/Marc_tools/run_damask_hmp | 209 +++++++++--------- .../2019/Marc_tools/run_damask_lmp | 209 +++++++++--------- .../2019/Marc_tools/run_damask_mp | 209 +++++++++--------- 18 files changed, 972 insertions(+), 936 deletions(-) diff --git a/installation/mods_MarcMentat/2018.1/Marc_tools/comp_damask_hmp b/installation/mods_MarcMentat/2018.1/Marc_tools/comp_damask_hmp index 36ced6543..2e6f44b77 100644 --- a/installation/mods_MarcMentat/2018.1/Marc_tools/comp_damask_hmp +++ b/installation/mods_MarcMentat/2018.1/Marc_tools/comp_damask_hmp @@ -49,4 +49,5 @@ echo "program: $program" exit 1 } /bin/rm $userobj - /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.smod diff --git a/installation/mods_MarcMentat/2018.1/Marc_tools/comp_damask_lmp b/installation/mods_MarcMentat/2018.1/Marc_tools/comp_damask_lmp index 8a0c1255d..d908d68ed 100644 --- a/installation/mods_MarcMentat/2018.1/Marc_tools/comp_damask_lmp +++ b/installation/mods_MarcMentat/2018.1/Marc_tools/comp_damask_lmp @@ -49,4 +49,5 @@ echo "program: $program" exit 1 } /bin/rm $userobj - /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.smod diff --git a/installation/mods_MarcMentat/2018.1/Marc_tools/comp_damask_mp b/installation/mods_MarcMentat/2018.1/Marc_tools/comp_damask_mp index 986d9ae04..b31d84d48 100644 --- a/installation/mods_MarcMentat/2018.1/Marc_tools/comp_damask_mp +++ b/installation/mods_MarcMentat/2018.1/Marc_tools/comp_damask_mp @@ -49,4 +49,5 @@ echo "program: $program" exit 1 } /bin/rm $userobj - /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.smod diff --git a/installation/mods_MarcMentat/2018.1/Marc_tools/run_damask_hmp b/installation/mods_MarcMentat/2018.1/Marc_tools/run_damask_hmp index ac376673a..24a931500 100644 --- a/installation/mods_MarcMentat/2018.1/Marc_tools/run_damask_hmp +++ b/installation/mods_MarcMentat/2018.1/Marc_tools/run_damask_hmp @@ -63,7 +63,7 @@ # =1, element storage out-of-core # # -dll run marc using shared library libmarc.so and exe_marc # # =1, used # -# =2, do not free streaming input memory # +# =2, do not free streaming input memory # # =3, run with marc input deck # # -trk run marc for post-tracking # # -gpuid run marc using GPGPU capability # @@ -177,16 +177,16 @@ fi # MARC_MODE i8 # it can also be set by the environmental variable MARC_INTEGER_SIZE # and by the command line option "-mo" -# +# mode= modeerror= modeoption= if test -f $DIRSCRIPT/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available - echo + echo line= fi line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults` @@ -203,7 +203,7 @@ fi if test -f $HOME/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available echo line= @@ -226,7 +226,7 @@ if test -z "$mode" ; then mode=i8 fi case $mode in - i4) + i4) modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported." modeoption=error echo $modeerror @@ -246,7 +246,7 @@ for arg in $* ; do if $setmode ; then mode=$arg case $mode in - i4) + i4) modeerror="bad value for mode option; only i8 is supported." modeoption=error echo @@ -269,7 +269,7 @@ for arg in $* ; do setmode=false fi if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then - echo + echo echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available echo setmode=true @@ -333,7 +333,7 @@ case "`echo '\c'`" in ;; esac -# +# # Variables for the MARC environment # @@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH export LD_LIBRARY_PATH export LD_LIBRARY64_PATH export LD_LIBRARYN32_PATH - + atexit() { kill -15 $$ # @@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a # or in the user's home directory # format: # MARC_MPI -# +# value= file= if test -f $DIRSCRIPT/run_marc_defaults; then @@ -523,7 +523,7 @@ if test -n "$value"; then notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then @@ -543,7 +543,7 @@ if test -n "$value"; then fi fi fi -# +# # # allow scratch directory to be specified with environmental variable # MARCSCRATCH @@ -613,7 +613,7 @@ do *) DIRJID=`pwd`/$DIRJID ;; - esac + esac ;; -r* | -R*) rid=`$BASENAME $value .t08` @@ -624,7 +624,7 @@ do *) DIRRID=`pwd`/$DIRRID ;; - esac + esac ;; -si* | -SI*) sid=$value @@ -635,7 +635,7 @@ do *) DIRSID=`pwd`/$DIRSID ;; - esac + esac ;; -pi* | -PI*) if test -f $value.t19 @@ -651,7 +651,7 @@ do *) DIRPID=`pwd`/$DIRPID ;; - esac + esac ;; -bdf | -BDF) makebdf=1 @@ -665,7 +665,7 @@ do *) DIRDID=`pwd`/$DIRDID ;; - esac + esac ;; -vf | -VF) vid=`$BASENAME $value .vfs` @@ -676,7 +676,7 @@ do *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; -u* | -U*) user=$value @@ -847,7 +847,7 @@ do *) DIRSCR=`pwd`/$DIRSCR ;; - esac + esac ;; -ho* | -HO*) host=$value @@ -898,7 +898,7 @@ fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -934,7 +934,7 @@ fi ntprint=$nt nteprint=$nte # copy from -nprocd[s] -if test $nprocdddm -gt 1 +if test $nprocdddm -gt 1 then nteprint=$nprocdddm fi @@ -943,7 +943,7 @@ if test $nte -ne 0 then nteprint=$nte fi -# check for minimum 1 threads per processes for DDM +# check for minimum 1 threads per processes for DDM if test $nprocdddm -gt 1 then if test $nteprint -lt $nprocdddm @@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M # deprecate -nthread option at arugment of marc nt=0 # Reset nprocdddmm, nsolver and threads if not given. -if test $nprocdddm -eq 0 -then +if test $nprocdddm -eq 0 +then nprocdarg= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddmprint= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddm= -fi +fi nsolverprint=$nsolver -if test $nsolver -eq 0 -then +if test $nsolver -eq 0 +then nsolverprint= -fi +fi # end of threads setting. gpuoption= if test "$gpuids" = "" ; then @@ -1030,7 +1030,7 @@ else MARCCUDALIBS=$MARCCUDALIBS2 export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH fi -# Linux 64 + HPMPI, Below code is taken from include_linux64 +# Linux 64 + HPMPI, Below code is taken from include_linux64 if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64" then export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH" @@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then fi if test "$progdll"; then - /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll + /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll rmdll=yes pathdll=yes progdll=${progdll}_$marcdll @@ -1093,14 +1093,14 @@ while test forever; do if test $nprocdddm -gt 1 -a $icreated -eq 0; then if test ! -f $DIRJID/1$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/1$jid$dotdat not accessible" fi fi else if test ! -f $DIRJID/$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/$jid$dotdat not accessible" fi fi @@ -1108,7 +1108,7 @@ fi if test $nprocd -gt 1; then if test "$host" ; then if test ! -f $host; then - error="$error + error="$error host name file $host not accessible" fi fi @@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible" notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)" fi fi @@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible" then if test $nauto -gt 2 then - error="$error + error="$error incorrect option for auto restart " fi fi @@ -1299,7 +1299,7 @@ incorrect option for auto restart " then if test $ndcoup -gt 3 then - error="$error + error="$error incorrect option for contact decoupling " fi fi @@ -1307,7 +1307,7 @@ incorrect option for contact decoupling " then if test $ndytran -gt 1 then - error="$error + error="$error incorrect option for Marc-Dytran Switch " fi fi @@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch " then if test ! -x $MARC_BIN/$exefile then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE " fi fi @@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT" *) DIRJID=`pwd`/$DIRJID ;; - esac + esac fi $ECHO "User subroutine name ($user)? $ECHOTXT" read value @@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT" *) user=`pwd`/$user ;; - esac + esac usernoext=$user usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f` usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F` @@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT" *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; esac fi @@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT" fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT" then qid=$value fi - case $qid in + case $qid in s* | S* | l* | L* | v* | V* ) $ECHO "Queue priority ($priority)? $ECHOTXT" read value @@ -2039,42 +2039,42 @@ esac done # -if test $nt -eq 0 -then +if test $nt -eq 0 +then ntarg= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then ntprint= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then nt= fi -if test $nte -eq 0 -then +if test $nte -eq 0 +then ntearg= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nteprint= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nte= fi -if test $nts -eq 0 -then +if test $nts -eq 0 +then ntsarg= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then ntsprint= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then nts= fi # @@ -2327,7 +2327,7 @@ fi execpath=$usernoext.marc usersub=1 fi - export execpath + export execpath execname=`$BASENAME $execpath` if test "$host" @@ -2360,7 +2360,7 @@ fi exit 1 fi -# check for Myrinet that the number of processes per host is +# check for Myrinet that the number of processes per host is # less than number of available user ports, 5 # .gmpi directory must exist in user's home directory # and must have write permission from remote hosts @@ -2474,9 +2474,9 @@ fi then # Intel MPI if test -f $jid.mfile - then + then /bin/rm $jid.mfile 2> /dev/null - fi + fi /bin/cp $host $jid.host grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile # end Intel MPI for DMP @@ -2560,7 +2560,7 @@ fi else host=$jid.host host_filt=$host - if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" + if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" then host_filt=$jid.mfile fi @@ -2569,7 +2569,7 @@ fi # or distributed and set the variable "dirstatus" accordingly. # only perform the check if user subroutine is used # or a user subroutine executable is used - + numfield=1 if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware then @@ -2729,7 +2729,7 @@ fi fi # modify new host file if NFS mounted heterogeneous machine doit= - if test $program = $prog.marc + if test $program = $prog.marc then doit=yes fi @@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} /bin/mv $jid.host{$$} $jid.host host=$jid.host - fi + fi fi - done + done fi fi # if test $program = $prog.marc -o $user -o $obj - + else # if test $host # assume shared memory machine if no hostfile given and # MPITYPE is set to mpich or Myrinet - # check for Myrinet that the total number of processes is + # check for Myrinet that the total number of processes is # less than number of available user ports, 5 if test $MPITYPE = "mpich" -o $MPITYPE = "scali" then numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'` echo `hostname` $numproc $execpath > $jid.host host=$jid.host - elif test $MPITYPE = "myrinet" + elif test $MPITYPE = "myrinet" then if test $nprocd -gt 5 then @@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} fi # if test $host fi # if test $nprocd -gt 1 - + fi # if test $program = $exefile -o $program = $prog.marc ############################################################################## @@ -2859,7 +2859,7 @@ else nsolverarg="$nsolverarg $nsolver" fi if test $nprocdddm -lt 2 -a $nsolver -eq 0 -then +then nprocd=0 fi if test $nprocd -gt 0 @@ -2870,7 +2870,7 @@ then then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB " then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -3267,6 +3267,7 @@ else fi /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3309,7 +3310,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null fi else if test $cpdll = yes; then @@ -3318,10 +3319,10 @@ else fi if test $rmdll = yes then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi - + if test $nprocdddm -gt 1 then numdom=$nprocdddm @@ -3389,15 +3390,15 @@ else # QUENAME=qsub SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid" -if test "$priority" +if test "$priority" then SUBMCMD=$SUBMCMD" -p $priority" fi -if test "$att" +if test "$att" then SUBMCMD=$SUBMCMD" -a $att" fi -if test "$cpu" +if test "$cpu" then SUBMCMD=$SUBMCMD" -lt $cpu" fi @@ -3579,7 +3580,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3599,6 +3600,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3647,7 +3649,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null # for network run, remove executable on remote machines # and executables with modified name if test $nprocd -gt 1 @@ -3696,7 +3698,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi if test $nprocdddm -gt 1 @@ -3913,7 +3915,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3933,6 +3935,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # done if no job id given if test -z "$jid" then @@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc " fi - $RUN_JOB + $RUN_JOB if test $nprocd -gt 1 then @@ -4055,7 +4058,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi diff --git a/installation/mods_MarcMentat/2018.1/Marc_tools/run_damask_lmp b/installation/mods_MarcMentat/2018.1/Marc_tools/run_damask_lmp index 0417ce4d6..49b6b81fd 100644 --- a/installation/mods_MarcMentat/2018.1/Marc_tools/run_damask_lmp +++ b/installation/mods_MarcMentat/2018.1/Marc_tools/run_damask_lmp @@ -63,7 +63,7 @@ # =1, element storage out-of-core # # -dll run marc using shared library libmarc.so and exe_marc # # =1, used # -# =2, do not free streaming input memory # +# =2, do not free streaming input memory # # =3, run with marc input deck # # -trk run marc for post-tracking # # -gpuid run marc using GPGPU capability # @@ -177,16 +177,16 @@ fi # MARC_MODE i8 # it can also be set by the environmental variable MARC_INTEGER_SIZE # and by the command line option "-mo" -# +# mode= modeerror= modeoption= if test -f $DIRSCRIPT/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available - echo + echo line= fi line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults` @@ -203,7 +203,7 @@ fi if test -f $HOME/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available echo line= @@ -226,7 +226,7 @@ if test -z "$mode" ; then mode=i8 fi case $mode in - i4) + i4) modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported." modeoption=error echo $modeerror @@ -246,7 +246,7 @@ for arg in $* ; do if $setmode ; then mode=$arg case $mode in - i4) + i4) modeerror="bad value for mode option; only i8 is supported." modeoption=error echo @@ -269,7 +269,7 @@ for arg in $* ; do setmode=false fi if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then - echo + echo echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available echo setmode=true @@ -333,7 +333,7 @@ case "`echo '\c'`" in ;; esac -# +# # Variables for the MARC environment # @@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH export LD_LIBRARY_PATH export LD_LIBRARY64_PATH export LD_LIBRARYN32_PATH - + atexit() { kill -15 $$ # @@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a # or in the user's home directory # format: # MARC_MPI -# +# value= file= if test -f $DIRSCRIPT/run_marc_defaults; then @@ -523,7 +523,7 @@ if test -n "$value"; then notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then @@ -543,7 +543,7 @@ if test -n "$value"; then fi fi fi -# +# # # allow scratch directory to be specified with environmental variable # MARCSCRATCH @@ -613,7 +613,7 @@ do *) DIRJID=`pwd`/$DIRJID ;; - esac + esac ;; -r* | -R*) rid=`$BASENAME $value .t08` @@ -624,7 +624,7 @@ do *) DIRRID=`pwd`/$DIRRID ;; - esac + esac ;; -si* | -SI*) sid=$value @@ -635,7 +635,7 @@ do *) DIRSID=`pwd`/$DIRSID ;; - esac + esac ;; -pi* | -PI*) if test -f $value.t19 @@ -651,7 +651,7 @@ do *) DIRPID=`pwd`/$DIRPID ;; - esac + esac ;; -bdf | -BDF) makebdf=1 @@ -665,7 +665,7 @@ do *) DIRDID=`pwd`/$DIRDID ;; - esac + esac ;; -vf | -VF) vid=`$BASENAME $value .vfs` @@ -676,7 +676,7 @@ do *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; -u* | -U*) user=$value @@ -847,7 +847,7 @@ do *) DIRSCR=`pwd`/$DIRSCR ;; - esac + esac ;; -ho* | -HO*) host=$value @@ -898,7 +898,7 @@ fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -934,7 +934,7 @@ fi ntprint=$nt nteprint=$nte # copy from -nprocd[s] -if test $nprocdddm -gt 1 +if test $nprocdddm -gt 1 then nteprint=$nprocdddm fi @@ -943,7 +943,7 @@ if test $nte -ne 0 then nteprint=$nte fi -# check for minimum 1 threads per processes for DDM +# check for minimum 1 threads per processes for DDM if test $nprocdddm -gt 1 then if test $nteprint -lt $nprocdddm @@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M # deprecate -nthread option at arugment of marc nt=0 # Reset nprocdddmm, nsolver and threads if not given. -if test $nprocdddm -eq 0 -then +if test $nprocdddm -eq 0 +then nprocdarg= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddmprint= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddm= -fi +fi nsolverprint=$nsolver -if test $nsolver -eq 0 -then +if test $nsolver -eq 0 +then nsolverprint= -fi +fi # end of threads setting. gpuoption= if test "$gpuids" = "" ; then @@ -1030,7 +1030,7 @@ else MARCCUDALIBS=$MARCCUDALIBS2 export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH fi -# Linux 64 + HPMPI, Below code is taken from include_linux64 +# Linux 64 + HPMPI, Below code is taken from include_linux64 if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64" then export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH" @@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then fi if test "$progdll"; then - /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll + /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll rmdll=yes pathdll=yes progdll=${progdll}_$marcdll @@ -1093,14 +1093,14 @@ while test forever; do if test $nprocdddm -gt 1 -a $icreated -eq 0; then if test ! -f $DIRJID/1$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/1$jid$dotdat not accessible" fi fi else if test ! -f $DIRJID/$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/$jid$dotdat not accessible" fi fi @@ -1108,7 +1108,7 @@ fi if test $nprocd -gt 1; then if test "$host" ; then if test ! -f $host; then - error="$error + error="$error host name file $host not accessible" fi fi @@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible" notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)" fi fi @@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible" then if test $nauto -gt 2 then - error="$error + error="$error incorrect option for auto restart " fi fi @@ -1299,7 +1299,7 @@ incorrect option for auto restart " then if test $ndcoup -gt 3 then - error="$error + error="$error incorrect option for contact decoupling " fi fi @@ -1307,7 +1307,7 @@ incorrect option for contact decoupling " then if test $ndytran -gt 1 then - error="$error + error="$error incorrect option for Marc-Dytran Switch " fi fi @@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch " then if test ! -x $MARC_BIN/$exefile then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE " fi fi @@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT" *) DIRJID=`pwd`/$DIRJID ;; - esac + esac fi $ECHO "User subroutine name ($user)? $ECHOTXT" read value @@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT" *) user=`pwd`/$user ;; - esac + esac usernoext=$user usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f` usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F` @@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT" *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; esac fi @@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT" fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT" then qid=$value fi - case $qid in + case $qid in s* | S* | l* | L* | v* | V* ) $ECHO "Queue priority ($priority)? $ECHOTXT" read value @@ -2039,42 +2039,42 @@ esac done # -if test $nt -eq 0 -then +if test $nt -eq 0 +then ntarg= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then ntprint= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then nt= fi -if test $nte -eq 0 -then +if test $nte -eq 0 +then ntearg= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nteprint= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nte= fi -if test $nts -eq 0 -then +if test $nts -eq 0 +then ntsarg= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then ntsprint= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then nts= fi # @@ -2327,7 +2327,7 @@ fi execpath=$usernoext.marc usersub=1 fi - export execpath + export execpath execname=`$BASENAME $execpath` if test "$host" @@ -2360,7 +2360,7 @@ fi exit 1 fi -# check for Myrinet that the number of processes per host is +# check for Myrinet that the number of processes per host is # less than number of available user ports, 5 # .gmpi directory must exist in user's home directory # and must have write permission from remote hosts @@ -2474,9 +2474,9 @@ fi then # Intel MPI if test -f $jid.mfile - then + then /bin/rm $jid.mfile 2> /dev/null - fi + fi /bin/cp $host $jid.host grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile # end Intel MPI for DMP @@ -2560,7 +2560,7 @@ fi else host=$jid.host host_filt=$host - if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" + if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" then host_filt=$jid.mfile fi @@ -2569,7 +2569,7 @@ fi # or distributed and set the variable "dirstatus" accordingly. # only perform the check if user subroutine is used # or a user subroutine executable is used - + numfield=1 if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware then @@ -2729,7 +2729,7 @@ fi fi # modify new host file if NFS mounted heterogeneous machine doit= - if test $program = $prog.marc + if test $program = $prog.marc then doit=yes fi @@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} /bin/mv $jid.host{$$} $jid.host host=$jid.host - fi + fi fi - done + done fi fi # if test $program = $prog.marc -o $user -o $obj - + else # if test $host # assume shared memory machine if no hostfile given and # MPITYPE is set to mpich or Myrinet - # check for Myrinet that the total number of processes is + # check for Myrinet that the total number of processes is # less than number of available user ports, 5 if test $MPITYPE = "mpich" -o $MPITYPE = "scali" then numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'` echo `hostname` $numproc $execpath > $jid.host host=$jid.host - elif test $MPITYPE = "myrinet" + elif test $MPITYPE = "myrinet" then if test $nprocd -gt 5 then @@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} fi # if test $host fi # if test $nprocd -gt 1 - + fi # if test $program = $exefile -o $program = $prog.marc ############################################################################## @@ -2859,7 +2859,7 @@ else nsolverarg="$nsolverarg $nsolver" fi if test $nprocdddm -lt 2 -a $nsolver -eq 0 -then +then nprocd=0 fi if test $nprocd -gt 0 @@ -2870,7 +2870,7 @@ then then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB " then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -3267,6 +3267,7 @@ else fi /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3309,7 +3310,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null fi else if test $cpdll = yes; then @@ -3318,10 +3319,10 @@ else fi if test $rmdll = yes then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi - + if test $nprocdddm -gt 1 then numdom=$nprocdddm @@ -3389,15 +3390,15 @@ else # QUENAME=qsub SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid" -if test "$priority" +if test "$priority" then SUBMCMD=$SUBMCMD" -p $priority" fi -if test "$att" +if test "$att" then SUBMCMD=$SUBMCMD" -a $att" fi -if test "$cpu" +if test "$cpu" then SUBMCMD=$SUBMCMD" -lt $cpu" fi @@ -3579,7 +3580,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3599,6 +3600,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3647,7 +3649,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null # for network run, remove executable on remote machines # and executables with modified name if test $nprocd -gt 1 @@ -3696,7 +3698,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi if test $nprocdddm -gt 1 @@ -3913,7 +3915,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3933,6 +3935,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # done if no job id given if test -z "$jid" then @@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc " fi - $RUN_JOB + $RUN_JOB if test $nprocd -gt 1 then @@ -4055,7 +4058,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi diff --git a/installation/mods_MarcMentat/2018.1/Marc_tools/run_damask_mp b/installation/mods_MarcMentat/2018.1/Marc_tools/run_damask_mp index dcf5a10d0..f42b973cf 100644 --- a/installation/mods_MarcMentat/2018.1/Marc_tools/run_damask_mp +++ b/installation/mods_MarcMentat/2018.1/Marc_tools/run_damask_mp @@ -63,7 +63,7 @@ # =1, element storage out-of-core # # -dll run marc using shared library libmarc.so and exe_marc # # =1, used # -# =2, do not free streaming input memory # +# =2, do not free streaming input memory # # =3, run with marc input deck # # -trk run marc for post-tracking # # -gpuid run marc using GPGPU capability # @@ -177,16 +177,16 @@ fi # MARC_MODE i8 # it can also be set by the environmental variable MARC_INTEGER_SIZE # and by the command line option "-mo" -# +# mode= modeerror= modeoption= if test -f $DIRSCRIPT/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available - echo + echo line= fi line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults` @@ -203,7 +203,7 @@ fi if test -f $HOME/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available echo line= @@ -226,7 +226,7 @@ if test -z "$mode" ; then mode=i8 fi case $mode in - i4) + i4) modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported." modeoption=error echo $modeerror @@ -246,7 +246,7 @@ for arg in $* ; do if $setmode ; then mode=$arg case $mode in - i4) + i4) modeerror="bad value for mode option; only i8 is supported." modeoption=error echo @@ -269,7 +269,7 @@ for arg in $* ; do setmode=false fi if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then - echo + echo echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available echo setmode=true @@ -333,7 +333,7 @@ case "`echo '\c'`" in ;; esac -# +# # Variables for the MARC environment # @@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH export LD_LIBRARY_PATH export LD_LIBRARY64_PATH export LD_LIBRARYN32_PATH - + atexit() { kill -15 $$ # @@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a # or in the user's home directory # format: # MARC_MPI -# +# value= file= if test -f $DIRSCRIPT/run_marc_defaults; then @@ -523,7 +523,7 @@ if test -n "$value"; then notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then @@ -543,7 +543,7 @@ if test -n "$value"; then fi fi fi -# +# # # allow scratch directory to be specified with environmental variable # MARCSCRATCH @@ -613,7 +613,7 @@ do *) DIRJID=`pwd`/$DIRJID ;; - esac + esac ;; -r* | -R*) rid=`$BASENAME $value .t08` @@ -624,7 +624,7 @@ do *) DIRRID=`pwd`/$DIRRID ;; - esac + esac ;; -si* | -SI*) sid=$value @@ -635,7 +635,7 @@ do *) DIRSID=`pwd`/$DIRSID ;; - esac + esac ;; -pi* | -PI*) if test -f $value.t19 @@ -651,7 +651,7 @@ do *) DIRPID=`pwd`/$DIRPID ;; - esac + esac ;; -bdf | -BDF) makebdf=1 @@ -665,7 +665,7 @@ do *) DIRDID=`pwd`/$DIRDID ;; - esac + esac ;; -vf | -VF) vid=`$BASENAME $value .vfs` @@ -676,7 +676,7 @@ do *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; -u* | -U*) user=$value @@ -847,7 +847,7 @@ do *) DIRSCR=`pwd`/$DIRSCR ;; - esac + esac ;; -ho* | -HO*) host=$value @@ -898,7 +898,7 @@ fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -934,7 +934,7 @@ fi ntprint=$nt nteprint=$nte # copy from -nprocd[s] -if test $nprocdddm -gt 1 +if test $nprocdddm -gt 1 then nteprint=$nprocdddm fi @@ -943,7 +943,7 @@ if test $nte -ne 0 then nteprint=$nte fi -# check for minimum 1 threads per processes for DDM +# check for minimum 1 threads per processes for DDM if test $nprocdddm -gt 1 then if test $nteprint -lt $nprocdddm @@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M # deprecate -nthread option at arugment of marc nt=0 # Reset nprocdddmm, nsolver and threads if not given. -if test $nprocdddm -eq 0 -then +if test $nprocdddm -eq 0 +then nprocdarg= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddmprint= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddm= -fi +fi nsolverprint=$nsolver -if test $nsolver -eq 0 -then +if test $nsolver -eq 0 +then nsolverprint= -fi +fi # end of threads setting. gpuoption= if test "$gpuids" = "" ; then @@ -1030,7 +1030,7 @@ else MARCCUDALIBS=$MARCCUDALIBS2 export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH fi -# Linux 64 + HPMPI, Below code is taken from include_linux64 +# Linux 64 + HPMPI, Below code is taken from include_linux64 if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64" then export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH" @@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then fi if test "$progdll"; then - /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll + /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll rmdll=yes pathdll=yes progdll=${progdll}_$marcdll @@ -1093,14 +1093,14 @@ while test forever; do if test $nprocdddm -gt 1 -a $icreated -eq 0; then if test ! -f $DIRJID/1$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/1$jid$dotdat not accessible" fi fi else if test ! -f $DIRJID/$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/$jid$dotdat not accessible" fi fi @@ -1108,7 +1108,7 @@ fi if test $nprocd -gt 1; then if test "$host" ; then if test ! -f $host; then - error="$error + error="$error host name file $host not accessible" fi fi @@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible" notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)" fi fi @@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible" then if test $nauto -gt 2 then - error="$error + error="$error incorrect option for auto restart " fi fi @@ -1299,7 +1299,7 @@ incorrect option for auto restart " then if test $ndcoup -gt 3 then - error="$error + error="$error incorrect option for contact decoupling " fi fi @@ -1307,7 +1307,7 @@ incorrect option for contact decoupling " then if test $ndytran -gt 1 then - error="$error + error="$error incorrect option for Marc-Dytran Switch " fi fi @@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch " then if test ! -x $MARC_BIN/$exefile then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE " fi fi @@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT" *) DIRJID=`pwd`/$DIRJID ;; - esac + esac fi $ECHO "User subroutine name ($user)? $ECHOTXT" read value @@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT" *) user=`pwd`/$user ;; - esac + esac usernoext=$user usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f` usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F` @@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT" *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; esac fi @@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT" fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT" then qid=$value fi - case $qid in + case $qid in s* | S* | l* | L* | v* | V* ) $ECHO "Queue priority ($priority)? $ECHOTXT" read value @@ -2039,42 +2039,42 @@ esac done # -if test $nt -eq 0 -then +if test $nt -eq 0 +then ntarg= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then ntprint= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then nt= fi -if test $nte -eq 0 -then +if test $nte -eq 0 +then ntearg= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nteprint= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nte= fi -if test $nts -eq 0 -then +if test $nts -eq 0 +then ntsarg= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then ntsprint= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then nts= fi # @@ -2327,7 +2327,7 @@ fi execpath=$usernoext.marc usersub=1 fi - export execpath + export execpath execname=`$BASENAME $execpath` if test "$host" @@ -2360,7 +2360,7 @@ fi exit 1 fi -# check for Myrinet that the number of processes per host is +# check for Myrinet that the number of processes per host is # less than number of available user ports, 5 # .gmpi directory must exist in user's home directory # and must have write permission from remote hosts @@ -2474,9 +2474,9 @@ fi then # Intel MPI if test -f $jid.mfile - then + then /bin/rm $jid.mfile 2> /dev/null - fi + fi /bin/cp $host $jid.host grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile # end Intel MPI for DMP @@ -2560,7 +2560,7 @@ fi else host=$jid.host host_filt=$host - if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" + if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" then host_filt=$jid.mfile fi @@ -2569,7 +2569,7 @@ fi # or distributed and set the variable "dirstatus" accordingly. # only perform the check if user subroutine is used # or a user subroutine executable is used - + numfield=1 if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware then @@ -2729,7 +2729,7 @@ fi fi # modify new host file if NFS mounted heterogeneous machine doit= - if test $program = $prog.marc + if test $program = $prog.marc then doit=yes fi @@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} /bin/mv $jid.host{$$} $jid.host host=$jid.host - fi + fi fi - done + done fi fi # if test $program = $prog.marc -o $user -o $obj - + else # if test $host # assume shared memory machine if no hostfile given and # MPITYPE is set to mpich or Myrinet - # check for Myrinet that the total number of processes is + # check for Myrinet that the total number of processes is # less than number of available user ports, 5 if test $MPITYPE = "mpich" -o $MPITYPE = "scali" then numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'` echo `hostname` $numproc $execpath > $jid.host host=$jid.host - elif test $MPITYPE = "myrinet" + elif test $MPITYPE = "myrinet" then if test $nprocd -gt 5 then @@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} fi # if test $host fi # if test $nprocd -gt 1 - + fi # if test $program = $exefile -o $program = $prog.marc ############################################################################## @@ -2859,7 +2859,7 @@ else nsolverarg="$nsolverarg $nsolver" fi if test $nprocdddm -lt 2 -a $nsolver -eq 0 -then +then nprocd=0 fi if test $nprocd -gt 0 @@ -2870,7 +2870,7 @@ then then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB " then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -3267,6 +3267,7 @@ else fi /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3309,7 +3310,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null fi else if test $cpdll = yes; then @@ -3318,10 +3319,10 @@ else fi if test $rmdll = yes then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi - + if test $nprocdddm -gt 1 then numdom=$nprocdddm @@ -3389,15 +3390,15 @@ else # QUENAME=qsub SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid" -if test "$priority" +if test "$priority" then SUBMCMD=$SUBMCMD" -p $priority" fi -if test "$att" +if test "$att" then SUBMCMD=$SUBMCMD" -a $att" fi -if test "$cpu" +if test "$cpu" then SUBMCMD=$SUBMCMD" -lt $cpu" fi @@ -3579,7 +3580,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3599,6 +3600,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3647,7 +3649,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null # for network run, remove executable on remote machines # and executables with modified name if test $nprocd -gt 1 @@ -3696,7 +3698,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi if test $nprocdddm -gt 1 @@ -3913,7 +3915,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3933,6 +3935,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # done if no job id given if test -z "$jid" then @@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc " fi - $RUN_JOB + $RUN_JOB if test $nprocd -gt 1 then @@ -4055,7 +4058,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi diff --git a/installation/mods_MarcMentat/2018/Marc_tools/comp_damask_hmp b/installation/mods_MarcMentat/2018/Marc_tools/comp_damask_hmp index 36ced6543..2e6f44b77 100644 --- a/installation/mods_MarcMentat/2018/Marc_tools/comp_damask_hmp +++ b/installation/mods_MarcMentat/2018/Marc_tools/comp_damask_hmp @@ -49,4 +49,5 @@ echo "program: $program" exit 1 } /bin/rm $userobj - /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.smod diff --git a/installation/mods_MarcMentat/2018/Marc_tools/comp_damask_lmp b/installation/mods_MarcMentat/2018/Marc_tools/comp_damask_lmp index 8a0c1255d..d908d68ed 100644 --- a/installation/mods_MarcMentat/2018/Marc_tools/comp_damask_lmp +++ b/installation/mods_MarcMentat/2018/Marc_tools/comp_damask_lmp @@ -49,4 +49,5 @@ echo "program: $program" exit 1 } /bin/rm $userobj - /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.smod diff --git a/installation/mods_MarcMentat/2018/Marc_tools/comp_damask_mp b/installation/mods_MarcMentat/2018/Marc_tools/comp_damask_mp index 986d9ae04..b31d84d48 100644 --- a/installation/mods_MarcMentat/2018/Marc_tools/comp_damask_mp +++ b/installation/mods_MarcMentat/2018/Marc_tools/comp_damask_mp @@ -49,4 +49,5 @@ echo "program: $program" exit 1 } /bin/rm $userobj - /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.smod diff --git a/installation/mods_MarcMentat/2018/Marc_tools/run_damask_hmp b/installation/mods_MarcMentat/2018/Marc_tools/run_damask_hmp index 7cc0b7149..cfd8ab35f 100644 --- a/installation/mods_MarcMentat/2018/Marc_tools/run_damask_hmp +++ b/installation/mods_MarcMentat/2018/Marc_tools/run_damask_hmp @@ -63,7 +63,7 @@ # =1, element storage out-of-core # # -dll run marc using shared library libmarc.so and exe_marc # # =1, used # -# =2, do not free streaming input memory # +# =2, do not free streaming input memory # # =3, run with marc input deck # # -trk run marc for post-tracking # # -gpuid run marc using GPGPU capability # @@ -177,16 +177,16 @@ fi # MARC_MODE i8 # it can also be set by the environmental variable MARC_INTEGER_SIZE # and by the command line option "-mo" -# +# mode= modeerror= modeoption= if test -f $DIRSCRIPT/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available - echo + echo line= fi line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults` @@ -203,7 +203,7 @@ fi if test -f $HOME/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available echo line= @@ -226,7 +226,7 @@ if test -z "$mode" ; then mode=i8 fi case $mode in - i4) + i4) modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported." modeoption=error echo $modeerror @@ -246,7 +246,7 @@ for arg in $* ; do if $setmode ; then mode=$arg case $mode in - i4) + i4) modeerror="bad value for mode option; only i8 is supported." modeoption=error echo @@ -269,7 +269,7 @@ for arg in $* ; do setmode=false fi if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then - echo + echo echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available echo setmode=true @@ -333,7 +333,7 @@ case "`echo '\c'`" in ;; esac -# +# # Variables for the MARC environment # @@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH export LD_LIBRARY_PATH export LD_LIBRARY64_PATH export LD_LIBRARYN32_PATH - + atexit() { kill -15 $$ # @@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a # or in the user's home directory # format: # MARC_MPI -# +# value= file= if test -f $DIRSCRIPT/run_marc_defaults; then @@ -523,7 +523,7 @@ if test -n "$value"; then notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then @@ -543,7 +543,7 @@ if test -n "$value"; then fi fi fi -# +# # # allow scratch directory to be specified with environmental variable # MARCSCRATCH @@ -613,7 +613,7 @@ do *) DIRJID=`pwd`/$DIRJID ;; - esac + esac ;; -r* | -R*) rid=`$BASENAME $value .t08` @@ -624,7 +624,7 @@ do *) DIRRID=`pwd`/$DIRRID ;; - esac + esac ;; -si* | -SI*) sid=$value @@ -635,7 +635,7 @@ do *) DIRSID=`pwd`/$DIRSID ;; - esac + esac ;; -pi* | -PI*) if test -f $value.t19 @@ -651,7 +651,7 @@ do *) DIRPID=`pwd`/$DIRPID ;; - esac + esac ;; -bdf | -BDF) makebdf=1 @@ -665,7 +665,7 @@ do *) DIRDID=`pwd`/$DIRDID ;; - esac + esac ;; -vf | -VF) vid=`$BASENAME $value .vfs` @@ -676,7 +676,7 @@ do *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; -u* | -U*) user=$value @@ -847,7 +847,7 @@ do *) DIRSCR=`pwd`/$DIRSCR ;; - esac + esac ;; -ho* | -HO*) host=$value @@ -898,7 +898,7 @@ fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -934,7 +934,7 @@ fi ntprint=$nt nteprint=$nte # copy from -nprocd[s] -if test $nprocdddm -gt 1 +if test $nprocdddm -gt 1 then nteprint=$nprocdddm fi @@ -943,7 +943,7 @@ if test $nte -ne 0 then nteprint=$nte fi -# check for minimum 1 threads per processes for DDM +# check for minimum 1 threads per processes for DDM if test $nprocdddm -gt 1 then if test $nteprint -lt $nprocdddm @@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M # deprecate -nthread option at arugment of marc nt=0 # Reset nprocdddmm, nsolver and threads if not given. -if test $nprocdddm -eq 0 -then +if test $nprocdddm -eq 0 +then nprocdarg= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddmprint= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddm= -fi +fi nsolverprint=$nsolver -if test $nsolver -eq 0 -then +if test $nsolver -eq 0 +then nsolverprint= -fi +fi # end of threads setting. gpuoption= if test "$gpuids" = "" ; then @@ -1030,7 +1030,7 @@ else MARCCUDALIBS=$MARCCUDALIBS2 export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH fi -# Linux 64 + HPMPI, Below code is taken from include_linux64 +# Linux 64 + HPMPI, Below code is taken from include_linux64 if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64" then export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH" @@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then fi if test "$progdll"; then - /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll + /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll rmdll=yes pathdll=yes progdll=${progdll}_$marcdll @@ -1093,14 +1093,14 @@ while test forever; do if test $nprocdddm -gt 1 -a $icreated -eq 0; then if test ! -f $DIRJID/1$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/1$jid$dotdat not accessible" fi fi else if test ! -f $DIRJID/$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/$jid$dotdat not accessible" fi fi @@ -1108,7 +1108,7 @@ fi if test $nprocd -gt 1; then if test "$host" ; then if test ! -f $host; then - error="$error + error="$error host name file $host not accessible" fi fi @@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible" notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)" fi fi @@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible" then if test $nauto -gt 2 then - error="$error + error="$error incorrect option for auto restart " fi fi @@ -1299,7 +1299,7 @@ incorrect option for auto restart " then if test $ndcoup -gt 3 then - error="$error + error="$error incorrect option for contact decoupling " fi fi @@ -1307,7 +1307,7 @@ incorrect option for contact decoupling " then if test $ndytran -gt 1 then - error="$error + error="$error incorrect option for Marc-Dytran Switch " fi fi @@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch " then if test ! -x $MARC_BIN/$exefile then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE " fi fi @@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT" *) DIRJID=`pwd`/$DIRJID ;; - esac + esac fi $ECHO "User subroutine name ($user)? $ECHOTXT" read value @@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT" *) user=`pwd`/$user ;; - esac + esac usernoext=$user usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f` usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F` @@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT" *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; esac fi @@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT" fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT" then qid=$value fi - case $qid in + case $qid in s* | S* | l* | L* | v* | V* ) $ECHO "Queue priority ($priority)? $ECHOTXT" read value @@ -2039,42 +2039,42 @@ esac done # -if test $nt -eq 0 -then +if test $nt -eq 0 +then ntarg= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then ntprint= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then nt= fi -if test $nte -eq 0 -then +if test $nte -eq 0 +then ntearg= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nteprint= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nte= fi -if test $nts -eq 0 -then +if test $nts -eq 0 +then ntsarg= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then ntsprint= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then nts= fi # @@ -2327,7 +2327,7 @@ fi execpath=$usernoext.marc usersub=1 fi - export execpath + export execpath execname=`$BASENAME $execpath` if test "$host" @@ -2360,7 +2360,7 @@ fi exit 1 fi -# check for Myrinet that the number of processes per host is +# check for Myrinet that the number of processes per host is # less than number of available user ports, 5 # .gmpi directory must exist in user's home directory # and must have write permission from remote hosts @@ -2474,9 +2474,9 @@ fi then # Intel MPI if test -f $jid.mfile - then + then /bin/rm $jid.mfile 2> /dev/null - fi + fi /bin/cp $host $jid.host grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile # end Intel MPI for DMP @@ -2560,7 +2560,7 @@ fi else host=$jid.host host_filt=$host - if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" + if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" then host_filt=$jid.mfile fi @@ -2569,7 +2569,7 @@ fi # or distributed and set the variable "dirstatus" accordingly. # only perform the check if user subroutine is used # or a user subroutine executable is used - + numfield=1 if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware then @@ -2729,7 +2729,7 @@ fi fi # modify new host file if NFS mounted heterogeneous machine doit= - if test $program = $prog.marc + if test $program = $prog.marc then doit=yes fi @@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} /bin/mv $jid.host{$$} $jid.host host=$jid.host - fi + fi fi - done + done fi fi # if test $program = $prog.marc -o $user -o $obj - + else # if test $host # assume shared memory machine if no hostfile given and # MPITYPE is set to mpich or Myrinet - # check for Myrinet that the total number of processes is + # check for Myrinet that the total number of processes is # less than number of available user ports, 5 if test $MPITYPE = "mpich" -o $MPITYPE = "scali" then numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'` echo `hostname` $numproc $execpath > $jid.host host=$jid.host - elif test $MPITYPE = "myrinet" + elif test $MPITYPE = "myrinet" then if test $nprocd -gt 5 then @@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} fi # if test $host fi # if test $nprocd -gt 1 - + fi # if test $program = $exefile -o $program = $prog.marc ############################################################################## @@ -2859,7 +2859,7 @@ else nsolverarg="$nsolverarg $nsolver" fi if test $nprocdddm -lt 2 -a $nsolver -eq 0 -then +then nprocd=0 fi if test $nprocd -gt 0 @@ -2870,7 +2870,7 @@ then then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB " then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -3267,6 +3267,7 @@ else fi /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3309,7 +3310,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null fi else if test $cpdll = yes; then @@ -3318,10 +3319,10 @@ else fi if test $rmdll = yes then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi - + if test $nprocdddm -gt 1 then numdom=$nprocdddm @@ -3389,15 +3390,15 @@ else # QUENAME=qsub SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid" -if test "$priority" +if test "$priority" then SUBMCMD=$SUBMCMD" -p $priority" fi -if test "$att" +if test "$att" then SUBMCMD=$SUBMCMD" -a $att" fi -if test "$cpu" +if test "$cpu" then SUBMCMD=$SUBMCMD" -lt $cpu" fi @@ -3579,7 +3580,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3599,6 +3600,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3647,7 +3649,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null # for network run, remove executable on remote machines # and executables with modified name if test $nprocd -gt 1 @@ -3696,7 +3698,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi if test $nprocdddm -gt 1 @@ -3913,7 +3915,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3933,6 +3935,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # done if no job id given if test -z "$jid" then @@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc " fi - $RUN_JOB + $RUN_JOB if test $nprocd -gt 1 then @@ -4055,7 +4058,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi diff --git a/installation/mods_MarcMentat/2018/Marc_tools/run_damask_lmp b/installation/mods_MarcMentat/2018/Marc_tools/run_damask_lmp index 1945e08c2..599e8c523 100644 --- a/installation/mods_MarcMentat/2018/Marc_tools/run_damask_lmp +++ b/installation/mods_MarcMentat/2018/Marc_tools/run_damask_lmp @@ -63,7 +63,7 @@ # =1, element storage out-of-core # # -dll run marc using shared library libmarc.so and exe_marc # # =1, used # -# =2, do not free streaming input memory # +# =2, do not free streaming input memory # # =3, run with marc input deck # # -trk run marc for post-tracking # # -gpuid run marc using GPGPU capability # @@ -177,16 +177,16 @@ fi # MARC_MODE i8 # it can also be set by the environmental variable MARC_INTEGER_SIZE # and by the command line option "-mo" -# +# mode= modeerror= modeoption= if test -f $DIRSCRIPT/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available - echo + echo line= fi line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults` @@ -203,7 +203,7 @@ fi if test -f $HOME/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available echo line= @@ -226,7 +226,7 @@ if test -z "$mode" ; then mode=i8 fi case $mode in - i4) + i4) modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported." modeoption=error echo $modeerror @@ -246,7 +246,7 @@ for arg in $* ; do if $setmode ; then mode=$arg case $mode in - i4) + i4) modeerror="bad value for mode option; only i8 is supported." modeoption=error echo @@ -269,7 +269,7 @@ for arg in $* ; do setmode=false fi if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then - echo + echo echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available echo setmode=true @@ -333,7 +333,7 @@ case "`echo '\c'`" in ;; esac -# +# # Variables for the MARC environment # @@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH export LD_LIBRARY_PATH export LD_LIBRARY64_PATH export LD_LIBRARYN32_PATH - + atexit() { kill -15 $$ # @@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a # or in the user's home directory # format: # MARC_MPI -# +# value= file= if test -f $DIRSCRIPT/run_marc_defaults; then @@ -523,7 +523,7 @@ if test -n "$value"; then notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then @@ -543,7 +543,7 @@ if test -n "$value"; then fi fi fi -# +# # # allow scratch directory to be specified with environmental variable # MARCSCRATCH @@ -613,7 +613,7 @@ do *) DIRJID=`pwd`/$DIRJID ;; - esac + esac ;; -r* | -R*) rid=`$BASENAME $value .t08` @@ -624,7 +624,7 @@ do *) DIRRID=`pwd`/$DIRRID ;; - esac + esac ;; -si* | -SI*) sid=$value @@ -635,7 +635,7 @@ do *) DIRSID=`pwd`/$DIRSID ;; - esac + esac ;; -pi* | -PI*) if test -f $value.t19 @@ -651,7 +651,7 @@ do *) DIRPID=`pwd`/$DIRPID ;; - esac + esac ;; -bdf | -BDF) makebdf=1 @@ -665,7 +665,7 @@ do *) DIRDID=`pwd`/$DIRDID ;; - esac + esac ;; -vf | -VF) vid=`$BASENAME $value .vfs` @@ -676,7 +676,7 @@ do *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; -u* | -U*) user=$value @@ -847,7 +847,7 @@ do *) DIRSCR=`pwd`/$DIRSCR ;; - esac + esac ;; -ho* | -HO*) host=$value @@ -898,7 +898,7 @@ fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -934,7 +934,7 @@ fi ntprint=$nt nteprint=$nte # copy from -nprocd[s] -if test $nprocdddm -gt 1 +if test $nprocdddm -gt 1 then nteprint=$nprocdddm fi @@ -943,7 +943,7 @@ if test $nte -ne 0 then nteprint=$nte fi -# check for minimum 1 threads per processes for DDM +# check for minimum 1 threads per processes for DDM if test $nprocdddm -gt 1 then if test $nteprint -lt $nprocdddm @@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M # deprecate -nthread option at arugment of marc nt=0 # Reset nprocdddmm, nsolver and threads if not given. -if test $nprocdddm -eq 0 -then +if test $nprocdddm -eq 0 +then nprocdarg= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddmprint= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddm= -fi +fi nsolverprint=$nsolver -if test $nsolver -eq 0 -then +if test $nsolver -eq 0 +then nsolverprint= -fi +fi # end of threads setting. gpuoption= if test "$gpuids" = "" ; then @@ -1030,7 +1030,7 @@ else MARCCUDALIBS=$MARCCUDALIBS2 export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH fi -# Linux 64 + HPMPI, Below code is taken from include_linux64 +# Linux 64 + HPMPI, Below code is taken from include_linux64 if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64" then export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH" @@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then fi if test "$progdll"; then - /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll + /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll rmdll=yes pathdll=yes progdll=${progdll}_$marcdll @@ -1093,14 +1093,14 @@ while test forever; do if test $nprocdddm -gt 1 -a $icreated -eq 0; then if test ! -f $DIRJID/1$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/1$jid$dotdat not accessible" fi fi else if test ! -f $DIRJID/$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/$jid$dotdat not accessible" fi fi @@ -1108,7 +1108,7 @@ fi if test $nprocd -gt 1; then if test "$host" ; then if test ! -f $host; then - error="$error + error="$error host name file $host not accessible" fi fi @@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible" notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)" fi fi @@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible" then if test $nauto -gt 2 then - error="$error + error="$error incorrect option for auto restart " fi fi @@ -1299,7 +1299,7 @@ incorrect option for auto restart " then if test $ndcoup -gt 3 then - error="$error + error="$error incorrect option for contact decoupling " fi fi @@ -1307,7 +1307,7 @@ incorrect option for contact decoupling " then if test $ndytran -gt 1 then - error="$error + error="$error incorrect option for Marc-Dytran Switch " fi fi @@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch " then if test ! -x $MARC_BIN/$exefile then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE " fi fi @@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT" *) DIRJID=`pwd`/$DIRJID ;; - esac + esac fi $ECHO "User subroutine name ($user)? $ECHOTXT" read value @@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT" *) user=`pwd`/$user ;; - esac + esac usernoext=$user usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f` usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F` @@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT" *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; esac fi @@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT" fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT" then qid=$value fi - case $qid in + case $qid in s* | S* | l* | L* | v* | V* ) $ECHO "Queue priority ($priority)? $ECHOTXT" read value @@ -2039,42 +2039,42 @@ esac done # -if test $nt -eq 0 -then +if test $nt -eq 0 +then ntarg= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then ntprint= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then nt= fi -if test $nte -eq 0 -then +if test $nte -eq 0 +then ntearg= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nteprint= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nte= fi -if test $nts -eq 0 -then +if test $nts -eq 0 +then ntsarg= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then ntsprint= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then nts= fi # @@ -2327,7 +2327,7 @@ fi execpath=$usernoext.marc usersub=1 fi - export execpath + export execpath execname=`$BASENAME $execpath` if test "$host" @@ -2360,7 +2360,7 @@ fi exit 1 fi -# check for Myrinet that the number of processes per host is +# check for Myrinet that the number of processes per host is # less than number of available user ports, 5 # .gmpi directory must exist in user's home directory # and must have write permission from remote hosts @@ -2474,9 +2474,9 @@ fi then # Intel MPI if test -f $jid.mfile - then + then /bin/rm $jid.mfile 2> /dev/null - fi + fi /bin/cp $host $jid.host grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile # end Intel MPI for DMP @@ -2560,7 +2560,7 @@ fi else host=$jid.host host_filt=$host - if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" + if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" then host_filt=$jid.mfile fi @@ -2569,7 +2569,7 @@ fi # or distributed and set the variable "dirstatus" accordingly. # only perform the check if user subroutine is used # or a user subroutine executable is used - + numfield=1 if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware then @@ -2729,7 +2729,7 @@ fi fi # modify new host file if NFS mounted heterogeneous machine doit= - if test $program = $prog.marc + if test $program = $prog.marc then doit=yes fi @@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} /bin/mv $jid.host{$$} $jid.host host=$jid.host - fi + fi fi - done + done fi fi # if test $program = $prog.marc -o $user -o $obj - + else # if test $host # assume shared memory machine if no hostfile given and # MPITYPE is set to mpich or Myrinet - # check for Myrinet that the total number of processes is + # check for Myrinet that the total number of processes is # less than number of available user ports, 5 if test $MPITYPE = "mpich" -o $MPITYPE = "scali" then numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'` echo `hostname` $numproc $execpath > $jid.host host=$jid.host - elif test $MPITYPE = "myrinet" + elif test $MPITYPE = "myrinet" then if test $nprocd -gt 5 then @@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} fi # if test $host fi # if test $nprocd -gt 1 - + fi # if test $program = $exefile -o $program = $prog.marc ############################################################################## @@ -2859,7 +2859,7 @@ else nsolverarg="$nsolverarg $nsolver" fi if test $nprocdddm -lt 2 -a $nsolver -eq 0 -then +then nprocd=0 fi if test $nprocd -gt 0 @@ -2870,7 +2870,7 @@ then then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB " then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -3267,6 +3267,7 @@ else fi /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3309,7 +3310,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null fi else if test $cpdll = yes; then @@ -3318,10 +3319,10 @@ else fi if test $rmdll = yes then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi - + if test $nprocdddm -gt 1 then numdom=$nprocdddm @@ -3389,15 +3390,15 @@ else # QUENAME=qsub SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid" -if test "$priority" +if test "$priority" then SUBMCMD=$SUBMCMD" -p $priority" fi -if test "$att" +if test "$att" then SUBMCMD=$SUBMCMD" -a $att" fi -if test "$cpu" +if test "$cpu" then SUBMCMD=$SUBMCMD" -lt $cpu" fi @@ -3579,7 +3580,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3599,6 +3600,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3647,7 +3649,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null # for network run, remove executable on remote machines # and executables with modified name if test $nprocd -gt 1 @@ -3696,7 +3698,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi if test $nprocdddm -gt 1 @@ -3913,7 +3915,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3933,6 +3935,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # done if no job id given if test -z "$jid" then @@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc " fi - $RUN_JOB + $RUN_JOB if test $nprocd -gt 1 then @@ -4055,7 +4058,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi diff --git a/installation/mods_MarcMentat/2018/Marc_tools/run_damask_mp b/installation/mods_MarcMentat/2018/Marc_tools/run_damask_mp index 3e99d3068..5261654e3 100644 --- a/installation/mods_MarcMentat/2018/Marc_tools/run_damask_mp +++ b/installation/mods_MarcMentat/2018/Marc_tools/run_damask_mp @@ -63,7 +63,7 @@ # =1, element storage out-of-core # # -dll run marc using shared library libmarc.so and exe_marc # # =1, used # -# =2, do not free streaming input memory # +# =2, do not free streaming input memory # # =3, run with marc input deck # # -trk run marc for post-tracking # # -gpuid run marc using GPGPU capability # @@ -177,16 +177,16 @@ fi # MARC_MODE i8 # it can also be set by the environmental variable MARC_INTEGER_SIZE # and by the command line option "-mo" -# +# mode= modeerror= modeoption= if test -f $DIRSCRIPT/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available - echo + echo line= fi line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults` @@ -203,7 +203,7 @@ fi if test -f $HOME/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available echo line= @@ -226,7 +226,7 @@ if test -z "$mode" ; then mode=i8 fi case $mode in - i4) + i4) modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported." modeoption=error echo $modeerror @@ -246,7 +246,7 @@ for arg in $* ; do if $setmode ; then mode=$arg case $mode in - i4) + i4) modeerror="bad value for mode option; only i8 is supported." modeoption=error echo @@ -269,7 +269,7 @@ for arg in $* ; do setmode=false fi if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then - echo + echo echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available echo setmode=true @@ -333,7 +333,7 @@ case "`echo '\c'`" in ;; esac -# +# # Variables for the MARC environment # @@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH export LD_LIBRARY_PATH export LD_LIBRARY64_PATH export LD_LIBRARYN32_PATH - + atexit() { kill -15 $$ # @@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a # or in the user's home directory # format: # MARC_MPI -# +# value= file= if test -f $DIRSCRIPT/run_marc_defaults; then @@ -523,7 +523,7 @@ if test -n "$value"; then notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then @@ -543,7 +543,7 @@ if test -n "$value"; then fi fi fi -# +# # # allow scratch directory to be specified with environmental variable # MARCSCRATCH @@ -613,7 +613,7 @@ do *) DIRJID=`pwd`/$DIRJID ;; - esac + esac ;; -r* | -R*) rid=`$BASENAME $value .t08` @@ -624,7 +624,7 @@ do *) DIRRID=`pwd`/$DIRRID ;; - esac + esac ;; -si* | -SI*) sid=$value @@ -635,7 +635,7 @@ do *) DIRSID=`pwd`/$DIRSID ;; - esac + esac ;; -pi* | -PI*) if test -f $value.t19 @@ -651,7 +651,7 @@ do *) DIRPID=`pwd`/$DIRPID ;; - esac + esac ;; -bdf | -BDF) makebdf=1 @@ -665,7 +665,7 @@ do *) DIRDID=`pwd`/$DIRDID ;; - esac + esac ;; -vf | -VF) vid=`$BASENAME $value .vfs` @@ -676,7 +676,7 @@ do *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; -u* | -U*) user=$value @@ -847,7 +847,7 @@ do *) DIRSCR=`pwd`/$DIRSCR ;; - esac + esac ;; -ho* | -HO*) host=$value @@ -898,7 +898,7 @@ fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -934,7 +934,7 @@ fi ntprint=$nt nteprint=$nte # copy from -nprocd[s] -if test $nprocdddm -gt 1 +if test $nprocdddm -gt 1 then nteprint=$nprocdddm fi @@ -943,7 +943,7 @@ if test $nte -ne 0 then nteprint=$nte fi -# check for minimum 1 threads per processes for DDM +# check for minimum 1 threads per processes for DDM if test $nprocdddm -gt 1 then if test $nteprint -lt $nprocdddm @@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M # deprecate -nthread option at arugment of marc nt=0 # Reset nprocdddmm, nsolver and threads if not given. -if test $nprocdddm -eq 0 -then +if test $nprocdddm -eq 0 +then nprocdarg= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddmprint= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddm= -fi +fi nsolverprint=$nsolver -if test $nsolver -eq 0 -then +if test $nsolver -eq 0 +then nsolverprint= -fi +fi # end of threads setting. gpuoption= if test "$gpuids" = "" ; then @@ -1030,7 +1030,7 @@ else MARCCUDALIBS=$MARCCUDALIBS2 export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH fi -# Linux 64 + HPMPI, Below code is taken from include_linux64 +# Linux 64 + HPMPI, Below code is taken from include_linux64 if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64" then export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH" @@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then fi if test "$progdll"; then - /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll + /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll rmdll=yes pathdll=yes progdll=${progdll}_$marcdll @@ -1093,14 +1093,14 @@ while test forever; do if test $nprocdddm -gt 1 -a $icreated -eq 0; then if test ! -f $DIRJID/1$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/1$jid$dotdat not accessible" fi fi else if test ! -f $DIRJID/$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/$jid$dotdat not accessible" fi fi @@ -1108,7 +1108,7 @@ fi if test $nprocd -gt 1; then if test "$host" ; then if test ! -f $host; then - error="$error + error="$error host name file $host not accessible" fi fi @@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible" notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)" fi fi @@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible" then if test $nauto -gt 2 then - error="$error + error="$error incorrect option for auto restart " fi fi @@ -1299,7 +1299,7 @@ incorrect option for auto restart " then if test $ndcoup -gt 3 then - error="$error + error="$error incorrect option for contact decoupling " fi fi @@ -1307,7 +1307,7 @@ incorrect option for contact decoupling " then if test $ndytran -gt 1 then - error="$error + error="$error incorrect option for Marc-Dytran Switch " fi fi @@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch " then if test ! -x $MARC_BIN/$exefile then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE " fi fi @@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT" *) DIRJID=`pwd`/$DIRJID ;; - esac + esac fi $ECHO "User subroutine name ($user)? $ECHOTXT" read value @@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT" *) user=`pwd`/$user ;; - esac + esac usernoext=$user usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f` usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F` @@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT" *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; esac fi @@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT" fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT" then qid=$value fi - case $qid in + case $qid in s* | S* | l* | L* | v* | V* ) $ECHO "Queue priority ($priority)? $ECHOTXT" read value @@ -2039,42 +2039,42 @@ esac done # -if test $nt -eq 0 -then +if test $nt -eq 0 +then ntarg= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then ntprint= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then nt= fi -if test $nte -eq 0 -then +if test $nte -eq 0 +then ntearg= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nteprint= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nte= fi -if test $nts -eq 0 -then +if test $nts -eq 0 +then ntsarg= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then ntsprint= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then nts= fi # @@ -2327,7 +2327,7 @@ fi execpath=$usernoext.marc usersub=1 fi - export execpath + export execpath execname=`$BASENAME $execpath` if test "$host" @@ -2360,7 +2360,7 @@ fi exit 1 fi -# check for Myrinet that the number of processes per host is +# check for Myrinet that the number of processes per host is # less than number of available user ports, 5 # .gmpi directory must exist in user's home directory # and must have write permission from remote hosts @@ -2474,9 +2474,9 @@ fi then # Intel MPI if test -f $jid.mfile - then + then /bin/rm $jid.mfile 2> /dev/null - fi + fi /bin/cp $host $jid.host grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile # end Intel MPI for DMP @@ -2560,7 +2560,7 @@ fi else host=$jid.host host_filt=$host - if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" + if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" then host_filt=$jid.mfile fi @@ -2569,7 +2569,7 @@ fi # or distributed and set the variable "dirstatus" accordingly. # only perform the check if user subroutine is used # or a user subroutine executable is used - + numfield=1 if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware then @@ -2729,7 +2729,7 @@ fi fi # modify new host file if NFS mounted heterogeneous machine doit= - if test $program = $prog.marc + if test $program = $prog.marc then doit=yes fi @@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} /bin/mv $jid.host{$$} $jid.host host=$jid.host - fi + fi fi - done + done fi fi # if test $program = $prog.marc -o $user -o $obj - + else # if test $host # assume shared memory machine if no hostfile given and # MPITYPE is set to mpich or Myrinet - # check for Myrinet that the total number of processes is + # check for Myrinet that the total number of processes is # less than number of available user ports, 5 if test $MPITYPE = "mpich" -o $MPITYPE = "scali" then numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'` echo `hostname` $numproc $execpath > $jid.host host=$jid.host - elif test $MPITYPE = "myrinet" + elif test $MPITYPE = "myrinet" then if test $nprocd -gt 5 then @@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} fi # if test $host fi # if test $nprocd -gt 1 - + fi # if test $program = $exefile -o $program = $prog.marc ############################################################################## @@ -2859,7 +2859,7 @@ else nsolverarg="$nsolverarg $nsolver" fi if test $nprocdddm -lt 2 -a $nsolver -eq 0 -then +then nprocd=0 fi if test $nprocd -gt 0 @@ -2870,7 +2870,7 @@ then then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB " then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -3267,6 +3267,7 @@ else fi /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3309,7 +3310,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null fi else if test $cpdll = yes; then @@ -3318,10 +3319,10 @@ else fi if test $rmdll = yes then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi - + if test $nprocdddm -gt 1 then numdom=$nprocdddm @@ -3389,15 +3390,15 @@ else # QUENAME=qsub SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid" -if test "$priority" +if test "$priority" then SUBMCMD=$SUBMCMD" -p $priority" fi -if test "$att" +if test "$att" then SUBMCMD=$SUBMCMD" -a $att" fi -if test "$cpu" +if test "$cpu" then SUBMCMD=$SUBMCMD" -lt $cpu" fi @@ -3579,7 +3580,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3599,6 +3600,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3647,7 +3649,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null # for network run, remove executable on remote machines # and executables with modified name if test $nprocd -gt 1 @@ -3696,7 +3698,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi if test $nprocdddm -gt 1 @@ -3913,7 +3915,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3933,6 +3935,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # done if no job id given if test -z "$jid" then @@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc " fi - $RUN_JOB + $RUN_JOB if test $nprocd -gt 1 then @@ -4055,7 +4058,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi diff --git a/installation/mods_MarcMentat/2019/Marc_tools/comp_damask_hmp b/installation/mods_MarcMentat/2019/Marc_tools/comp_damask_hmp index 36ced6543..2e6f44b77 100644 --- a/installation/mods_MarcMentat/2019/Marc_tools/comp_damask_hmp +++ b/installation/mods_MarcMentat/2019/Marc_tools/comp_damask_hmp @@ -49,4 +49,5 @@ echo "program: $program" exit 1 } /bin/rm $userobj - /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.smod diff --git a/installation/mods_MarcMentat/2019/Marc_tools/comp_damask_lmp b/installation/mods_MarcMentat/2019/Marc_tools/comp_damask_lmp index 8a0c1255d..d908d68ed 100644 --- a/installation/mods_MarcMentat/2019/Marc_tools/comp_damask_lmp +++ b/installation/mods_MarcMentat/2019/Marc_tools/comp_damask_lmp @@ -49,4 +49,5 @@ echo "program: $program" exit 1 } /bin/rm $userobj - /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.smod diff --git a/installation/mods_MarcMentat/2019/Marc_tools/comp_damask_mp b/installation/mods_MarcMentat/2019/Marc_tools/comp_damask_mp index 986d9ae04..b31d84d48 100644 --- a/installation/mods_MarcMentat/2019/Marc_tools/comp_damask_mp +++ b/installation/mods_MarcMentat/2019/Marc_tools/comp_damask_mp @@ -49,4 +49,5 @@ echo "program: $program" exit 1 } /bin/rm $userobj - /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.mod + /bin/rm $DIRJOB/*.smod diff --git a/installation/mods_MarcMentat/2019/Marc_tools/run_damask_hmp b/installation/mods_MarcMentat/2019/Marc_tools/run_damask_hmp index 2a35ecb37..4a9200e8b 100644 --- a/installation/mods_MarcMentat/2019/Marc_tools/run_damask_hmp +++ b/installation/mods_MarcMentat/2019/Marc_tools/run_damask_hmp @@ -62,7 +62,7 @@ # =1, element storage out-of-core # # -dll run marc using shared library libmarc.so and exe_marc # # =1, used # -# =2, do not free streaming input memory # +# =2, do not free streaming input memory # # =3, run with marc input deck # # -trk run marc for post-tracking # # -gpuid run marc using GPGPU capability # @@ -176,16 +176,16 @@ fi # MARC_MODE i8 # it can also be set by the environmental variable MARC_INTEGER_SIZE # and by the command line option "-mo" -# +# mode= modeerror= modeoption= if test -f $DIRSCRIPT/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available - echo + echo line= fi line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults` @@ -202,7 +202,7 @@ fi if test -f $HOME/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available echo line= @@ -225,7 +225,7 @@ if test -z "$mode" ; then mode=i8 fi case $mode in - i4) + i4) modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported." modeoption=error echo $modeerror @@ -245,7 +245,7 @@ for arg in $* ; do if $setmode ; then mode=$arg case $mode in - i4) + i4) modeerror="bad value for mode option; only i8 is supported." modeoption=error echo @@ -268,7 +268,7 @@ for arg in $* ; do setmode=false fi if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then - echo + echo echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available echo setmode=true @@ -332,7 +332,7 @@ case "`echo '\c'`" in ;; esac -# +# # Variables for the MARC environment # @@ -387,7 +387,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH export LD_LIBRARY_PATH export LD_LIBRARY64_PATH export LD_LIBRARYN32_PATH - + atexit() { kill -15 $$ # @@ -497,7 +497,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a # or in the user's home directory # format: # MARC_MPI -# +# value= file= if test -f $DIRSCRIPT/run_marc_defaults; then @@ -522,7 +522,7 @@ if test -n "$value"; then notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then @@ -542,7 +542,7 @@ if test -n "$value"; then fi fi fi -# +# # # allow scratch directory to be specified with environmental variable # MARCSCRATCH @@ -612,7 +612,7 @@ do *) DIRJID=`pwd`/$DIRJID ;; - esac + esac ;; -r* | -R*) rid=`$BASENAME $value .t08` @@ -623,7 +623,7 @@ do *) DIRRID=`pwd`/$DIRRID ;; - esac + esac ;; -si* | -SI*) sid=$value @@ -634,7 +634,7 @@ do *) DIRSID=`pwd`/$DIRSID ;; - esac + esac ;; -pi* | -PI*) if test -f $value.t19 @@ -650,7 +650,7 @@ do *) DIRPID=`pwd`/$DIRPID ;; - esac + esac ;; -bdf | -BDF) makebdf=1 @@ -664,7 +664,7 @@ do *) DIRDID=`pwd`/$DIRDID ;; - esac + esac ;; -vf | -VF) vid=`$BASENAME $value .vfs` @@ -675,7 +675,7 @@ do *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; -u* | -U*) user=$value @@ -777,7 +777,7 @@ do ;; -au* | -AU*) nauto=$value - echo + echo echo warning: the option -au is no longer supported and will be ignored echo ;; @@ -849,7 +849,7 @@ do *) DIRSCR=`pwd`/$DIRSCR ;; - esac + esac ;; -ho* | -HO*) host=$value @@ -900,7 +900,7 @@ fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -936,7 +936,7 @@ fi ntprint=$nt nteprint=$nte # copy from -nprocd[s] -if test $nprocdddm -gt 1 +if test $nprocdddm -gt 1 then nteprint=$nprocdddm fi @@ -945,7 +945,7 @@ if test $nte -ne 0 then nteprint=$nte fi -# check for minimum 1 threads per processes for DDM +# check for minimum 1 threads per processes for DDM if test $nprocdddm -gt 1 then if test $nteprint -lt $nprocdddm @@ -1000,24 +1000,24 @@ export OMP_STACKSIZE=7M # deprecate -nthread option at arugment of marc nt=0 # Reset nprocdddmm, nsolver and threads if not given. -if test $nprocdddm -eq 0 -then +if test $nprocdddm -eq 0 +then nprocdarg= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddmprint= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddm= -fi +fi nsolverprint=$nsolver -if test $nsolver -eq 0 -then +if test $nsolver -eq 0 +then nsolverprint= -fi +fi # end of threads setting. gpuoption= if test "$gpuids" = "" ; then @@ -1032,7 +1032,7 @@ else MARCCUDALIBS=$MARCCUDALIBS2 export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH fi -# Linux 64 + HPMPI, Below code is taken from include_linux64 +# Linux 64 + HPMPI, Below code is taken from include_linux64 if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64" then export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH" @@ -1061,7 +1061,7 @@ if test "$dllrun" -gt 0; then fi if test "$progdll"; then - /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll + /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll rmdll=yes pathdll=yes progdll=${progdll}_$marcdll @@ -1095,14 +1095,14 @@ while test forever; do if test $nprocdddm -gt 1 -a $icreated -eq 0; then if test ! -f $DIRJID/1$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/1$jid$dotdat not accessible" fi fi else if test ! -f $DIRJID/$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/$jid$dotdat not accessible" fi fi @@ -1110,7 +1110,7 @@ fi if test $nprocd -gt 1; then if test "$host" ; then if test ! -f $host; then - error="$error + error="$error host name file $host not accessible" fi fi @@ -1224,11 +1224,11 @@ view factor file $DIRVID/$vid.vfs not accessible" notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)" fi fi @@ -1293,7 +1293,7 @@ defaults file $DIRDID/$did$dotdat not accessible" then if test $ndcoup -gt 3 then - error="$error + error="$error incorrect option for contact decoupling " fi fi @@ -1301,7 +1301,7 @@ incorrect option for contact decoupling " then if test $ndytran -gt 1 then - error="$error + error="$error incorrect option for Marc-Dytran Switch " fi fi @@ -1309,7 +1309,7 @@ incorrect option for Marc-Dytran Switch " then if test ! -x $MARC_BIN/$exefile then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE " fi fi @@ -1626,7 +1626,7 @@ Program name ($prog)? $ECHOTXT" *) DIRJID=`pwd`/$DIRJID ;; - esac + esac fi $ECHO "User subroutine name ($user)? $ECHOTXT" read value @@ -1644,7 +1644,7 @@ Program name ($prog)? $ECHOTXT" *) user=`pwd`/$user ;; - esac + esac usernoext=$user usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f` usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F` @@ -1767,7 +1767,7 @@ Program name ($prog)? $ECHOTXT" *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; esac fi @@ -1809,7 +1809,7 @@ Program name ($prog)? $ECHOTXT" fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -1959,7 +1959,7 @@ Program name ($prog)? $ECHOTXT" then qid=$value fi - case $qid in + case $qid in s* | S* | l* | L* | v* | V* ) $ECHO "Queue priority ($priority)? $ECHOTXT" read value @@ -2017,42 +2017,42 @@ esac done # -if test $nt -eq 0 -then +if test $nt -eq 0 +then ntarg= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then ntprint= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then nt= fi -if test $nte -eq 0 -then +if test $nte -eq 0 +then ntearg= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nteprint= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nte= fi -if test $nts -eq 0 -then +if test $nts -eq 0 +then ntsarg= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then ntsprint= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then nts= fi # @@ -2305,7 +2305,7 @@ fi execpath=$usernoext.marc usersub=1 fi - export execpath + export execpath execname=`$BASENAME $execpath` if test "$host" @@ -2338,7 +2338,7 @@ fi exit 1 fi -# check for Myrinet that the number of processes per host is +# check for Myrinet that the number of processes per host is # less than number of available user ports, 5 # .gmpi directory must exist in user's home directory # and must have write permission from remote hosts @@ -2452,9 +2452,9 @@ fi then # Intel MPI if test -f $jid.mfile - then + then /bin/rm $jid.mfile 2> /dev/null - fi + fi /bin/cp $host $jid.host grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile # end Intel MPI for DMP @@ -2538,7 +2538,7 @@ fi else host=$jid.host host_filt=$host - if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" + if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" then host_filt=$jid.mfile fi @@ -2547,7 +2547,7 @@ fi # or distributed and set the variable "dirstatus" accordingly. # only perform the check if user subroutine is used # or a user subroutine executable is used - + numfield=1 if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware then @@ -2707,7 +2707,7 @@ fi fi # modify new host file if NFS mounted heterogeneous machine doit= - if test $program = $prog.marc + if test $program = $prog.marc then doit=yes fi @@ -2731,23 +2731,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} /bin/mv $jid.host{$$} $jid.host host=$jid.host - fi + fi fi - done + done fi fi # if test $program = $prog.marc -o $user -o $obj - + else # if test $host # assume shared memory machine if no hostfile given and # MPITYPE is set to mpich or Myrinet - # check for Myrinet that the total number of processes is + # check for Myrinet that the total number of processes is # less than number of available user ports, 5 if test $MPITYPE = "mpich" -o $MPITYPE = "scali" then numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'` echo `hostname` $numproc $execpath > $jid.host host=$jid.host - elif test $MPITYPE = "myrinet" + elif test $MPITYPE = "myrinet" then if test $nprocd -gt 5 then @@ -2787,7 +2787,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} fi # if test $host fi # if test $nprocd -gt 1 - + fi # if test $program = $exefile -o $program = $prog.marc ############################################################################## @@ -2837,7 +2837,7 @@ else nsolverarg="$nsolverarg $nsolver" fi if test $nprocdddm -lt 2 -a $nsolver -eq 0 -then +then nprocd=0 fi if test $nprocd -gt 0 @@ -2848,7 +2848,7 @@ then then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -2953,7 +2953,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB " then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -3241,6 +3241,7 @@ else fi /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3283,7 +3284,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null fi else if test $cpdll = yes; then @@ -3292,10 +3293,10 @@ else fi if test $rmdll = yes then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi - + if test $nprocdddm -gt 1 then numdom=$nprocdddm @@ -3363,15 +3364,15 @@ else # QUENAME=qsub SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid" -if test "$priority" +if test "$priority" then SUBMCMD=$SUBMCMD" -p $priority" fi -if test "$att" +if test "$att" then SUBMCMD=$SUBMCMD" -a $att" fi -if test "$cpu" +if test "$cpu" then SUBMCMD=$SUBMCMD" -lt $cpu" fi @@ -3553,7 +3554,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3573,6 +3574,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3621,7 +3623,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null # for network run, remove executable on remote machines # and executables with modified name if test $nprocd -gt 1 @@ -3670,7 +3672,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi if test $nprocdddm -gt 1 @@ -3887,7 +3889,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3907,6 +3909,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # done if no job id given if test -z "$jid" then @@ -3946,7 +3949,7 @@ if test $ddm_arc -gt 0; then RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc " fi - $RUN_JOB + $RUN_JOB if test $nprocd -gt 1 then @@ -4029,7 +4032,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi diff --git a/installation/mods_MarcMentat/2019/Marc_tools/run_damask_lmp b/installation/mods_MarcMentat/2019/Marc_tools/run_damask_lmp index 32f115dc6..ea6872059 100644 --- a/installation/mods_MarcMentat/2019/Marc_tools/run_damask_lmp +++ b/installation/mods_MarcMentat/2019/Marc_tools/run_damask_lmp @@ -62,7 +62,7 @@ # =1, element storage out-of-core # # -dll run marc using shared library libmarc.so and exe_marc # # =1, used # -# =2, do not free streaming input memory # +# =2, do not free streaming input memory # # =3, run with marc input deck # # -trk run marc for post-tracking # # -gpuid run marc using GPGPU capability # @@ -176,16 +176,16 @@ fi # MARC_MODE i8 # it can also be set by the environmental variable MARC_INTEGER_SIZE # and by the command line option "-mo" -# +# mode= modeerror= modeoption= if test -f $DIRSCRIPT/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available - echo + echo line= fi line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults` @@ -202,7 +202,7 @@ fi if test -f $HOME/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available echo line= @@ -225,7 +225,7 @@ if test -z "$mode" ; then mode=i8 fi case $mode in - i4) + i4) modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported." modeoption=error echo $modeerror @@ -245,7 +245,7 @@ for arg in $* ; do if $setmode ; then mode=$arg case $mode in - i4) + i4) modeerror="bad value for mode option; only i8 is supported." modeoption=error echo @@ -268,7 +268,7 @@ for arg in $* ; do setmode=false fi if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then - echo + echo echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available echo setmode=true @@ -332,7 +332,7 @@ case "`echo '\c'`" in ;; esac -# +# # Variables for the MARC environment # @@ -387,7 +387,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH export LD_LIBRARY_PATH export LD_LIBRARY64_PATH export LD_LIBRARYN32_PATH - + atexit() { kill -15 $$ # @@ -497,7 +497,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a # or in the user's home directory # format: # MARC_MPI -# +# value= file= if test -f $DIRSCRIPT/run_marc_defaults; then @@ -522,7 +522,7 @@ if test -n "$value"; then notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then @@ -542,7 +542,7 @@ if test -n "$value"; then fi fi fi -# +# # # allow scratch directory to be specified with environmental variable # MARCSCRATCH @@ -612,7 +612,7 @@ do *) DIRJID=`pwd`/$DIRJID ;; - esac + esac ;; -r* | -R*) rid=`$BASENAME $value .t08` @@ -623,7 +623,7 @@ do *) DIRRID=`pwd`/$DIRRID ;; - esac + esac ;; -si* | -SI*) sid=$value @@ -634,7 +634,7 @@ do *) DIRSID=`pwd`/$DIRSID ;; - esac + esac ;; -pi* | -PI*) if test -f $value.t19 @@ -650,7 +650,7 @@ do *) DIRPID=`pwd`/$DIRPID ;; - esac + esac ;; -bdf | -BDF) makebdf=1 @@ -664,7 +664,7 @@ do *) DIRDID=`pwd`/$DIRDID ;; - esac + esac ;; -vf | -VF) vid=`$BASENAME $value .vfs` @@ -675,7 +675,7 @@ do *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; -u* | -U*) user=$value @@ -777,7 +777,7 @@ do ;; -au* | -AU*) nauto=$value - echo + echo echo warning: the option -au is no longer supported and will be ignored echo ;; @@ -849,7 +849,7 @@ do *) DIRSCR=`pwd`/$DIRSCR ;; - esac + esac ;; -ho* | -HO*) host=$value @@ -900,7 +900,7 @@ fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -936,7 +936,7 @@ fi ntprint=$nt nteprint=$nte # copy from -nprocd[s] -if test $nprocdddm -gt 1 +if test $nprocdddm -gt 1 then nteprint=$nprocdddm fi @@ -945,7 +945,7 @@ if test $nte -ne 0 then nteprint=$nte fi -# check for minimum 1 threads per processes for DDM +# check for minimum 1 threads per processes for DDM if test $nprocdddm -gt 1 then if test $nteprint -lt $nprocdddm @@ -1000,24 +1000,24 @@ export OMP_STACKSIZE=7M # deprecate -nthread option at arugment of marc nt=0 # Reset nprocdddmm, nsolver and threads if not given. -if test $nprocdddm -eq 0 -then +if test $nprocdddm -eq 0 +then nprocdarg= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddmprint= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddm= -fi +fi nsolverprint=$nsolver -if test $nsolver -eq 0 -then +if test $nsolver -eq 0 +then nsolverprint= -fi +fi # end of threads setting. gpuoption= if test "$gpuids" = "" ; then @@ -1032,7 +1032,7 @@ else MARCCUDALIBS=$MARCCUDALIBS2 export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH fi -# Linux 64 + HPMPI, Below code is taken from include_linux64 +# Linux 64 + HPMPI, Below code is taken from include_linux64 if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64" then export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH" @@ -1061,7 +1061,7 @@ if test "$dllrun" -gt 0; then fi if test "$progdll"; then - /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll + /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll rmdll=yes pathdll=yes progdll=${progdll}_$marcdll @@ -1095,14 +1095,14 @@ while test forever; do if test $nprocdddm -gt 1 -a $icreated -eq 0; then if test ! -f $DIRJID/1$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/1$jid$dotdat not accessible" fi fi else if test ! -f $DIRJID/$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/$jid$dotdat not accessible" fi fi @@ -1110,7 +1110,7 @@ fi if test $nprocd -gt 1; then if test "$host" ; then if test ! -f $host; then - error="$error + error="$error host name file $host not accessible" fi fi @@ -1224,11 +1224,11 @@ view factor file $DIRVID/$vid.vfs not accessible" notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)" fi fi @@ -1293,7 +1293,7 @@ defaults file $DIRDID/$did$dotdat not accessible" then if test $ndcoup -gt 3 then - error="$error + error="$error incorrect option for contact decoupling " fi fi @@ -1301,7 +1301,7 @@ incorrect option for contact decoupling " then if test $ndytran -gt 1 then - error="$error + error="$error incorrect option for Marc-Dytran Switch " fi fi @@ -1309,7 +1309,7 @@ incorrect option for Marc-Dytran Switch " then if test ! -x $MARC_BIN/$exefile then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE " fi fi @@ -1626,7 +1626,7 @@ Program name ($prog)? $ECHOTXT" *) DIRJID=`pwd`/$DIRJID ;; - esac + esac fi $ECHO "User subroutine name ($user)? $ECHOTXT" read value @@ -1644,7 +1644,7 @@ Program name ($prog)? $ECHOTXT" *) user=`pwd`/$user ;; - esac + esac usernoext=$user usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f` usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F` @@ -1767,7 +1767,7 @@ Program name ($prog)? $ECHOTXT" *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; esac fi @@ -1809,7 +1809,7 @@ Program name ($prog)? $ECHOTXT" fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -1959,7 +1959,7 @@ Program name ($prog)? $ECHOTXT" then qid=$value fi - case $qid in + case $qid in s* | S* | l* | L* | v* | V* ) $ECHO "Queue priority ($priority)? $ECHOTXT" read value @@ -2017,42 +2017,42 @@ esac done # -if test $nt -eq 0 -then +if test $nt -eq 0 +then ntarg= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then ntprint= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then nt= fi -if test $nte -eq 0 -then +if test $nte -eq 0 +then ntearg= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nteprint= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nte= fi -if test $nts -eq 0 -then +if test $nts -eq 0 +then ntsarg= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then ntsprint= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then nts= fi # @@ -2305,7 +2305,7 @@ fi execpath=$usernoext.marc usersub=1 fi - export execpath + export execpath execname=`$BASENAME $execpath` if test "$host" @@ -2338,7 +2338,7 @@ fi exit 1 fi -# check for Myrinet that the number of processes per host is +# check for Myrinet that the number of processes per host is # less than number of available user ports, 5 # .gmpi directory must exist in user's home directory # and must have write permission from remote hosts @@ -2452,9 +2452,9 @@ fi then # Intel MPI if test -f $jid.mfile - then + then /bin/rm $jid.mfile 2> /dev/null - fi + fi /bin/cp $host $jid.host grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile # end Intel MPI for DMP @@ -2538,7 +2538,7 @@ fi else host=$jid.host host_filt=$host - if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" + if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" then host_filt=$jid.mfile fi @@ -2547,7 +2547,7 @@ fi # or distributed and set the variable "dirstatus" accordingly. # only perform the check if user subroutine is used # or a user subroutine executable is used - + numfield=1 if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware then @@ -2707,7 +2707,7 @@ fi fi # modify new host file if NFS mounted heterogeneous machine doit= - if test $program = $prog.marc + if test $program = $prog.marc then doit=yes fi @@ -2731,23 +2731,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} /bin/mv $jid.host{$$} $jid.host host=$jid.host - fi + fi fi - done + done fi fi # if test $program = $prog.marc -o $user -o $obj - + else # if test $host # assume shared memory machine if no hostfile given and # MPITYPE is set to mpich or Myrinet - # check for Myrinet that the total number of processes is + # check for Myrinet that the total number of processes is # less than number of available user ports, 5 if test $MPITYPE = "mpich" -o $MPITYPE = "scali" then numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'` echo `hostname` $numproc $execpath > $jid.host host=$jid.host - elif test $MPITYPE = "myrinet" + elif test $MPITYPE = "myrinet" then if test $nprocd -gt 5 then @@ -2787,7 +2787,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} fi # if test $host fi # if test $nprocd -gt 1 - + fi # if test $program = $exefile -o $program = $prog.marc ############################################################################## @@ -2837,7 +2837,7 @@ else nsolverarg="$nsolverarg $nsolver" fi if test $nprocdddm -lt 2 -a $nsolver -eq 0 -then +then nprocd=0 fi if test $nprocd -gt 0 @@ -2848,7 +2848,7 @@ then then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -2953,7 +2953,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB " then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -3241,6 +3241,7 @@ else fi /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3283,7 +3284,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null fi else if test $cpdll = yes; then @@ -3292,10 +3293,10 @@ else fi if test $rmdll = yes then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi - + if test $nprocdddm -gt 1 then numdom=$nprocdddm @@ -3363,15 +3364,15 @@ else # QUENAME=qsub SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid" -if test "$priority" +if test "$priority" then SUBMCMD=$SUBMCMD" -p $priority" fi -if test "$att" +if test "$att" then SUBMCMD=$SUBMCMD" -a $att" fi -if test "$cpu" +if test "$cpu" then SUBMCMD=$SUBMCMD" -lt $cpu" fi @@ -3553,7 +3554,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3573,6 +3574,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3621,7 +3623,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null # for network run, remove executable on remote machines # and executables with modified name if test $nprocd -gt 1 @@ -3670,7 +3672,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi if test $nprocdddm -gt 1 @@ -3887,7 +3889,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3907,6 +3909,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # done if no job id given if test -z "$jid" then @@ -3946,7 +3949,7 @@ if test $ddm_arc -gt 0; then RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc " fi - $RUN_JOB + $RUN_JOB if test $nprocd -gt 1 then @@ -4029,7 +4032,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi diff --git a/installation/mods_MarcMentat/2019/Marc_tools/run_damask_mp b/installation/mods_MarcMentat/2019/Marc_tools/run_damask_mp index 471a63eaf..8aa27505c 100644 --- a/installation/mods_MarcMentat/2019/Marc_tools/run_damask_mp +++ b/installation/mods_MarcMentat/2019/Marc_tools/run_damask_mp @@ -62,7 +62,7 @@ # =1, element storage out-of-core # # -dll run marc using shared library libmarc.so and exe_marc # # =1, used # -# =2, do not free streaming input memory # +# =2, do not free streaming input memory # # =3, run with marc input deck # # -trk run marc for post-tracking # # -gpuid run marc using GPGPU capability # @@ -176,16 +176,16 @@ fi # MARC_MODE i8 # it can also be set by the environmental variable MARC_INTEGER_SIZE # and by the command line option "-mo" -# +# mode= modeerror= modeoption= if test -f $DIRSCRIPT/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available - echo + echo line= fi line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults` @@ -202,7 +202,7 @@ fi if test -f $HOME/run_marc_defaults; then line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults` if test "$line" = "MARC_MODE"; then - echo + echo echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available echo line= @@ -225,7 +225,7 @@ if test -z "$mode" ; then mode=i8 fi case $mode in - i4) + i4) modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported." modeoption=error echo $modeerror @@ -245,7 +245,7 @@ for arg in $* ; do if $setmode ; then mode=$arg case $mode in - i4) + i4) modeerror="bad value for mode option; only i8 is supported." modeoption=error echo @@ -268,7 +268,7 @@ for arg in $* ; do setmode=false fi if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then - echo + echo echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available echo setmode=true @@ -332,7 +332,7 @@ case "`echo '\c'`" in ;; esac -# +# # Variables for the MARC environment # @@ -387,7 +387,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH export LD_LIBRARY_PATH export LD_LIBRARY64_PATH export LD_LIBRARYN32_PATH - + atexit() { kill -15 $$ # @@ -497,7 +497,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a # or in the user's home directory # format: # MARC_MPI -# +# value= file= if test -f $DIRSCRIPT/run_marc_defaults; then @@ -522,7 +522,7 @@ if test -n "$value"; then notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then @@ -542,7 +542,7 @@ if test -n "$value"; then fi fi fi -# +# # # allow scratch directory to be specified with environmental variable # MARCSCRATCH @@ -612,7 +612,7 @@ do *) DIRJID=`pwd`/$DIRJID ;; - esac + esac ;; -r* | -R*) rid=`$BASENAME $value .t08` @@ -623,7 +623,7 @@ do *) DIRRID=`pwd`/$DIRRID ;; - esac + esac ;; -si* | -SI*) sid=$value @@ -634,7 +634,7 @@ do *) DIRSID=`pwd`/$DIRSID ;; - esac + esac ;; -pi* | -PI*) if test -f $value.t19 @@ -650,7 +650,7 @@ do *) DIRPID=`pwd`/$DIRPID ;; - esac + esac ;; -bdf | -BDF) makebdf=1 @@ -664,7 +664,7 @@ do *) DIRDID=`pwd`/$DIRDID ;; - esac + esac ;; -vf | -VF) vid=`$BASENAME $value .vfs` @@ -675,7 +675,7 @@ do *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; -u* | -U*) user=$value @@ -777,7 +777,7 @@ do ;; -au* | -AU*) nauto=$value - echo + echo echo warning: the option -au is no longer supported and will be ignored echo ;; @@ -849,7 +849,7 @@ do *) DIRSCR=`pwd`/$DIRSCR ;; - esac + esac ;; -ho* | -HO*) host=$value @@ -900,7 +900,7 @@ fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -936,7 +936,7 @@ fi ntprint=$nt nteprint=$nte # copy from -nprocd[s] -if test $nprocdddm -gt 1 +if test $nprocdddm -gt 1 then nteprint=$nprocdddm fi @@ -945,7 +945,7 @@ if test $nte -ne 0 then nteprint=$nte fi -# check for minimum 1 threads per processes for DDM +# check for minimum 1 threads per processes for DDM if test $nprocdddm -gt 1 then if test $nteprint -lt $nprocdddm @@ -1000,24 +1000,24 @@ export OMP_STACKSIZE=7M # deprecate -nthread option at arugment of marc nt=0 # Reset nprocdddmm, nsolver and threads if not given. -if test $nprocdddm -eq 0 -then +if test $nprocdddm -eq 0 +then nprocdarg= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddmprint= -fi -if test $nprocdddm -eq 0 -then +fi +if test $nprocdddm -eq 0 +then nprocdddm= -fi +fi nsolverprint=$nsolver -if test $nsolver -eq 0 -then +if test $nsolver -eq 0 +then nsolverprint= -fi +fi # end of threads setting. gpuoption= if test "$gpuids" = "" ; then @@ -1032,7 +1032,7 @@ else MARCCUDALIBS=$MARCCUDALIBS2 export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH fi -# Linux 64 + HPMPI, Below code is taken from include_linux64 +# Linux 64 + HPMPI, Below code is taken from include_linux64 if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64" then export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH" @@ -1061,7 +1061,7 @@ if test "$dllrun" -gt 0; then fi if test "$progdll"; then - /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll + /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll rmdll=yes pathdll=yes progdll=${progdll}_$marcdll @@ -1095,14 +1095,14 @@ while test forever; do if test $nprocdddm -gt 1 -a $icreated -eq 0; then if test ! -f $DIRJID/1$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/1$jid$dotdat not accessible" fi fi else if test ! -f $DIRJID/$jid$dotdat; then if test "$jid" != "" ; then - error="$error + error="$error input file $DIRJID/$jid$dotdat not accessible" fi fi @@ -1110,7 +1110,7 @@ fi if test $nprocd -gt 1; then if test "$host" ; then if test ! -f $host; then - error="$error + error="$error host name file $host not accessible" fi fi @@ -1224,11 +1224,11 @@ view factor file $DIRVID/$vid.vfs not accessible" notok=false fi done - if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then + if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then notok=false fi if $notok; then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)" fi fi @@ -1293,7 +1293,7 @@ defaults file $DIRDID/$did$dotdat not accessible" then if test $ndcoup -gt 3 then - error="$error + error="$error incorrect option for contact decoupling " fi fi @@ -1301,7 +1301,7 @@ incorrect option for contact decoupling " then if test $ndytran -gt 1 then - error="$error + error="$error incorrect option for Marc-Dytran Switch " fi fi @@ -1309,7 +1309,7 @@ incorrect option for Marc-Dytran Switch " then if test ! -x $MARC_BIN/$exefile then - error="$error + error="$error incorrect option for -mpi option: $MARC_MPITYPE " fi fi @@ -1626,7 +1626,7 @@ Program name ($prog)? $ECHOTXT" *) DIRJID=`pwd`/$DIRJID ;; - esac + esac fi $ECHO "User subroutine name ($user)? $ECHOTXT" read value @@ -1644,7 +1644,7 @@ Program name ($prog)? $ECHOTXT" *) user=`pwd`/$user ;; - esac + esac usernoext=$user usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f` usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F` @@ -1767,7 +1767,7 @@ Program name ($prog)? $ECHOTXT" *) DIRVID=`pwd`/$DIRVID ;; - esac + esac ;; esac fi @@ -1809,7 +1809,7 @@ Program name ($prog)? $ECHOTXT" fi if test $nsolver -gt 0 then - if test $nsolver -gt $nprocd + if test $nsolver -gt $nprocd then nprocd=$nsolver fi @@ -1959,7 +1959,7 @@ Program name ($prog)? $ECHOTXT" then qid=$value fi - case $qid in + case $qid in s* | S* | l* | L* | v* | V* ) $ECHO "Queue priority ($priority)? $ECHOTXT" read value @@ -2017,42 +2017,42 @@ esac done # -if test $nt -eq 0 -then +if test $nt -eq 0 +then ntarg= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then ntprint= -fi -if test $nt -eq 0 -then +fi +if test $nt -eq 0 +then nt= fi -if test $nte -eq 0 -then +if test $nte -eq 0 +then ntearg= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nteprint= -fi -if test $nte -eq 0 -then +fi +if test $nte -eq 0 +then nte= fi -if test $nts -eq 0 -then +if test $nts -eq 0 +then ntsarg= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then ntsprint= -fi -if test $nts -eq 0 -then +fi +if test $nts -eq 0 +then nts= fi # @@ -2305,7 +2305,7 @@ fi execpath=$usernoext.marc usersub=1 fi - export execpath + export execpath execname=`$BASENAME $execpath` if test "$host" @@ -2338,7 +2338,7 @@ fi exit 1 fi -# check for Myrinet that the number of processes per host is +# check for Myrinet that the number of processes per host is # less than number of available user ports, 5 # .gmpi directory must exist in user's home directory # and must have write permission from remote hosts @@ -2452,9 +2452,9 @@ fi then # Intel MPI if test -f $jid.mfile - then + then /bin/rm $jid.mfile 2> /dev/null - fi + fi /bin/cp $host $jid.host grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile # end Intel MPI for DMP @@ -2538,7 +2538,7 @@ fi else host=$jid.host host_filt=$host - if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" + if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" then host_filt=$jid.mfile fi @@ -2547,7 +2547,7 @@ fi # or distributed and set the variable "dirstatus" accordingly. # only perform the check if user subroutine is used # or a user subroutine executable is used - + numfield=1 if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware then @@ -2707,7 +2707,7 @@ fi fi # modify new host file if NFS mounted heterogeneous machine doit= - if test $program = $prog.marc + if test $program = $prog.marc then doit=yes fi @@ -2731,23 +2731,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} /bin/mv $jid.host{$$} $jid.host host=$jid.host - fi + fi fi - done + done fi fi # if test $program = $prog.marc -o $user -o $obj - + else # if test $host # assume shared memory machine if no hostfile given and # MPITYPE is set to mpich or Myrinet - # check for Myrinet that the total number of processes is + # check for Myrinet that the total number of processes is # less than number of available user ports, 5 if test $MPITYPE = "mpich" -o $MPITYPE = "scali" then numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'` echo `hostname` $numproc $execpath > $jid.host host=$jid.host - elif test $MPITYPE = "myrinet" + elif test $MPITYPE = "myrinet" then if test $nprocd -gt 5 then @@ -2787,7 +2787,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$} fi # if test $host fi # if test $nprocd -gt 1 - + fi # if test $program = $exefile -o $program = $prog.marc ############################################################################## @@ -2837,7 +2837,7 @@ else nsolverarg="$nsolverarg $nsolver" fi if test $nprocdddm -lt 2 -a $nsolver -eq 0 -then +then nprocd=0 fi if test $nprocd -gt 0 @@ -2848,7 +2848,7 @@ then then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -2953,7 +2953,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB " then echo " " echo "error: parallel job attempted on non-parallel version," - echo " or, if parallel version is installed, the include " + echo " or, if parallel version is installed, the include " echo " file is probably corrupted" echo " " if test "$deletelog" = no @@ -3241,6 +3241,7 @@ else fi /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3283,7 +3284,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null fi else if test $cpdll = yes; then @@ -3292,10 +3293,10 @@ else fi if test $rmdll = yes then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi - + if test $nprocdddm -gt 1 then numdom=$nprocdddm @@ -3363,15 +3364,15 @@ else # QUENAME=qsub SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid" -if test "$priority" +if test "$priority" then SUBMCMD=$SUBMCMD" -p $priority" fi -if test "$att" +if test "$att" then SUBMCMD=$SUBMCMD" -a $att" fi -if test "$cpu" +if test "$cpu" then SUBMCMD=$SUBMCMD" -lt $cpu" fi @@ -3553,7 +3554,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3573,6 +3574,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # # run marc @@ -3621,7 +3623,7 @@ fi if test $dllrun -eq 0; then if test $prgsav = no then - /bin/rm -f $bd$program 2>/dev/null + /bin/rm -f $bd$program 2>/dev/null # for network run, remove executable on remote machines # and executables with modified name if test $nprocd -gt 1 @@ -3670,7 +3672,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi if test $nprocdddm -gt 1 @@ -3887,7 +3889,7 @@ then then counter=$((counter+1)) if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes" - then + then DIR1=$DIRJOB line=`grep -v '^#' $userhost | grep "^$ibase "` workdir=`echo $line | $AWK '{print $3}'` @@ -3907,6 +3909,7 @@ else # if test $link fi # if test $link /bin/rm $userobj 2>/dev/null /bin/rm $DIRJOB/*.mod 2>/dev/null +/bin/rm $DIRJOB/*.smod 2>/dev/null # done if no job id given if test -z "$jid" then @@ -3946,7 +3949,7 @@ if test $ddm_arc -gt 0; then RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc " fi - $RUN_JOB + $RUN_JOB if test $nprocd -gt 1 then @@ -4029,7 +4032,7 @@ else /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null fi if test $rmdll = yes;then - /bin/rm -f $DIRJOB/$marcdll 2>/dev/null + /bin/rm -f $DIRJOB/$marcdll 2>/dev/null fi fi