DAMASK_EICMD/python/damask/_vtk.py

from pathlib import Path

import pandas as pd
import numpy as np
import vtk
from vtk.util.numpy_support import numpy_to_vtk            as np_to_vtk
from vtk.util.numpy_support import numpy_to_vtkIdTypeArray as np_to_vtkIdTypeArray

from . import Table
from . import Environment
from . import version


class VTK:
    """
    Spatial visualization (and potentially manipulation).

    High-level interface to VTK.
    """

    def __init__(self,geom):
        """
        Set geometry and topology.

        Parameters
        ----------
        geom : subclass of vtk.vtkDataSet
            Description of geometry and topology. Valid types are vtk.vtkRectilinearGrid,
            vtk.vtkUnstructuredGrid, or vtk.vtkPolyData.

        """
        self.geom = geom


    @staticmethod
    def from_rectilinearGrid(grid,size,origin=np.zeros(3)):
        """
        Create VTK of type vtk.vtkRectilinearGrid.

        This is the common type for results from the grid solver.

        Parameters
        ----------
        grid : numpy.ndarray of shape (3) of np.dtype = int
            Number of cells.
        size : numpy.ndarray of shape (3)
            Physical length.
        origin : numpy.ndarray of shape (3), optional
            Spatial origin.

        """
        geom = vtk.vtkRectilinearGrid()
        geom.SetDimensions(*(grid+1))
        geom.SetXCoordinates(np_to_vtk(np.linspace(origin[0],origin[0]+size[0],grid[0]+1),deep=True))
        geom.SetYCoordinates(np_to_vtk(np.linspace(origin[1],origin[1]+size[1],grid[1]+1),deep=True))
        geom.SetZCoordinates(np_to_vtk(np.linspace(origin[2],origin[2]+size[2],grid[2]+1),deep=True))

        return VTK(geom)


    @staticmethod
    def from_unstructuredGrid(nodes,connectivity,cell_type):
        """
        Create VTK of type vtk.vtkUnstructuredGrid.

        This is the common type for results from FEM solvers.

        Parameters
        ----------
        nodes : numpy.ndarray of shape (:,3)
            Spatial position of the nodes.
        connectivity : numpy.ndarray of np.dtype = int
            Cell connectivity (0-based), first dimension determines #Cells, second dimension determines #Nodes/Cell.
        cell_type : str
            Name of the vtk.vtkCell subclass. Tested for TRIANGLE, QUAD, TETRA, and HEXAHEDRON.

        """
        vtk_nodes = vtk.vtkPoints()
        vtk_nodes.SetData(np_to_vtk(nodes))
        cells = vtk.vtkCellArray()
        cells.SetNumberOfCells(connectivity.shape[0])
        T = np.concatenate((np.ones((connectivity.shape[0],1),dtype=np.int64)*connectivity.shape[1],
                            connectivity),axis=1).ravel()
        cells.SetCells(connectivity.shape[0],np_to_vtkIdTypeArray(T,deep=True))

        geom = vtk.vtkUnstructuredGrid()
        geom.SetPoints(vtk_nodes)
        geom.SetCells(eval('vtk.VTK_{}'.format(cell_type.split('_',1)[-1].upper())),cells)

        return VTK(geom)


    @staticmethod
    def from_polyData(points):
        """
        Create VTK of type vtk.polyData.

        This is the common type for point-wise data.

        Parameters
        ----------
        points : numpy.ndarray of shape (:,3)
            Spatial position of the points.

        """
        vtk_points = vtk.vtkPoints()
        vtk_points.SetData(np_to_vtk(points))

        geom = vtk.vtkPolyData()
        geom.SetPoints(vtk_points)

        return VTK(geom)


    @staticmethod
    def from_file(fname,dataset_type=None):
        """
        Create VTK from file.

        Parameters
        ----------
        fname : str
            Filename for reading. Valid extensions are .vtr, .vtu, .vtp, and .vtk.
        dataset_type : str, optional
            Name of the vtk.vtkDataSet subclass when opening an .vtk file. Valid types are vtkRectilinearGrid,
            vtkUnstructuredGrid, and vtkPolyData.

        """
        ext = Path(fname).suffix
        if ext == '.vtk' or dataset_type:
            reader = vtk.vtkGenericDataObjectReader()
            reader.SetFileName(fname)
            reader.Update()
            if dataset_type is None:
                raise TypeError('Dataset type for *.vtk file not given.')
            elif dataset_type.lower().endswith('rectilineargrid'):
                geom = reader.GetRectilinearGridOutput()
            elif dataset_type.lower().endswith('unstructuredgrid'):
                geom = reader.GetUnstructuredGridOutput()
            elif dataset_type.lower().endswith('polydata'):
                geom = reader.GetPolyDataOutput()
            else:
                raise TypeError('Unknown dataset type for vtk file {}'.format(dataset_type))
        else:
            if   ext == '.vtr':
                reader = vtk.vtkXMLRectilinearGridReader()
            elif ext == '.vtu':
                reader = vtk.vtkXMLUnstructuredGridReader()
            elif ext == '.vtp':
                reader = vtk.vtkXMLPolyDataReader()
            else:
                raise TypeError('Unknown file extension {}'.format(ext))

            reader.SetFileName(fname)
            reader.Update()
            geom = reader.GetOutput()

        return VTK(geom)


    def write(self,fname):
        """
        Write to file.

        Parameters
        ----------
        fname : str
            Filename for writing.

        """
        if   isinstance(self.geom,vtk.vtkRectilinearGrid):
            writer = vtk.vtkXMLRectilinearGridWriter()
        elif isinstance(self.geom,vtk.vtkUnstructuredGrid):
            writer = vtk.vtkXMLUnstructuredGridWriter()
        elif isinstance(self.geom,vtk.vtkPolyData):
            writer = vtk.vtkXMLPolyDataWriter()

        default_ext = writer.GetDefaultFileExtension()
        ext = Path(fname).suffix
        if ext and ext != '.'+default_ext:
            raise ValueError('Given extension {} does not match default .{}'.format(ext,default_ext))
        writer.SetFileName(str(Path(fname).with_suffix('.'+default_ext)))
        writer.SetCompressorTypeToZLib()
        writer.SetDataModeToBinary()
        writer.SetInputData(self.geom)

        writer.Write()


    # Check https://blog.kitware.com/ghost-and-blanking-visibility-changes/ for missing data
    # Needs support for pd.DataFrame and/or table
    def add(self,data,label=None):
        """Add data to either cells or points."""
        N_points = self.geom.GetNumberOfPoints()
        N_cells  = self.geom.GetNumberOfCells()

        if   isinstance(data,np.ndarray):
            d = np_to_vtk(num_array=data.reshape(data.shape[0],-1),deep=True)
            if label is None:
                raise ValueError('No label defined for numpy.ndarray')
            d.SetName(label)
            if   data.shape[0] == N_cells:
                self.geom.GetCellData().AddArray(d)
            elif data.shape[0] == N_points:
                self.geom.GetPointData().AddArray(d)
        elif isinstance(data,pd.DataFrame):
            raise NotImplementedError('pd.DataFrame')
        elif isinstance(data,Table):
            raise NotImplementedError('damask.Table')
        else:
            raise TypeError


    def __repr__(self):
        """ASCII representation of the VTK data."""
        writer = vtk.vtkDataSetWriter()
        writer.SetHeader('# DAMASK.VTK v{}'.format(version))
        writer.WriteToOutputStringOn()
        writer.SetInputData(self.geom)
        writer.Write()
        return writer.GetOutputString()


    def show(self):
        """
        Render.

        See http://compilatrix.com/article/vtk-1 for further ideas.
        """
        mapper = vtk.vtkDataSetMapper()
        mapper.SetInputData(self.geom)
        actor = vtk.vtkActor()
        actor.SetMapper(mapper)

        ren = vtk.vtkRenderer()

        window = vtk.vtkRenderWindow()
        window.AddRenderer(ren)

        ren.AddActor(actor)
        ren.SetBackground(0.2,0.2,0.2)

        window.SetSize(Environment().screen_width,Environment().screen_height)

        iren = vtk.vtkRenderWindowInteractor()
        iren.SetRenderWindow(window)

        iren.Initialize()
        window.Render()
        iren.Start()