DAMASK_EICMD/install/MarcMentat/apply_DAMASK_modifications.py

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#!/usr/bin/env python3
import os
import glob
import argparse
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import shutil
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from pathlib import Path
import damask
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def copy_and_patch(patch,orig,editor):
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try:
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shutil.copyfile(orig,orig.parent/patch.stem)
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except shutil.SameFileError:
pass
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damask.util.run(f'patch {orig.parent/patch.stem} {patch} -b')
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with open(orig.parent/patch.stem) as f_in:
content = f_in.read()
with open(orig.parent/patch.stem,'w') as f_out:
f_out.write(content.replace('%EDITOR%',editor))
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parser = argparse.ArgumentParser(
description='Apply DAMASK modification to MSC Marc/Mentat',
formatter_class=argparse.ArgumentDefaultsHelpFormatter)
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parser.add_argument('--editor', dest='editor', metavar='string', default='vi',
help='Name of the editor for Marc Mentat (executable)')
parser.add_argument('--marc-root', dest='marc_root', metavar='string',
default=damask.solver._marc._marc_root,
help='Marc root directory')
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parser.add_argument('--marc-version', dest='marc_version', metavar='string',
default=damask.solver._marc._marc_version,
help='Marc version')
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parser.add_argument('--damask-root', dest='damask_root', metavar = 'string',
default=damask.solver._marc._damask_root,
help='DAMASK root directory')
args = parser.parse_args()
marc_root = Path(args.marc_root).expanduser()
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damask_root = Path(args.damask_root).expanduser()
marc_version = args.marc_version
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matches = {'Marc_tools': [['comp_user','comp_damask_*mp'],
['run_marc','run_damask_*mp'],
['include_linux64','include_linux64']],
'Mentat_bin': [['edit_window','edit_window'],
['submit1','submit?'],
['kill1','kill?']],
'Mentat_menus':[['job_run.ms','job_run.ms']]}
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print('patching files...')
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for directory in glob.glob(str(damask_root/'install/MarcMentat'/marc_version/'*')):
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for orig, mods in matches[Path(directory).name]:
product,subfolder = (marc_root/Path(directory)).name.split('_')
orig = marc_root/f'{product.lower()}{marc_version}/{subfolder}/{orig}'
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for patch in glob.glob(f'{directory}/{mods}.patch'):
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copy_and_patch(Path(patch),orig,args.editor)
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print('compiling Mentat menu binaries...')
executable = marc_root/f'mentat{marc_version}/bin/mentat'
menu_file = marc_root/f'mentat{marc_version}/menus/linux64/main.msb'
os.system(f'xvfb-run -a {executable} -compile {menu_file}')
print('setting file access rights...')
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for file in (glob.glob(str(marc_root/f'marc{marc_version}/tools/*_damask*')) +
glob.glob(str(marc_root/f'mentat{marc_version}/bin/kill[4-6]')) +
glob.glob(str(marc_root/f'mentat{marc_version}/bin/submit[4-6]'))):
os.chmod(file , 0o755)