DAMASK_EICMD/src/mesh_marc.f90

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!--------------------------------------------------------------------------------------------------
!> @author Franz Roters, Max-Planck-Institut für Eisenforschung GmbH
!> @author Philip Eisenlohr, Max-Planck-Institut für Eisenforschung GmbH
!> @author Christoph Koords, Max-Planck-Institut für Eisenforschung GmbH
!> @author Martin Diehl, Max-Planck-Institut für Eisenforschung GmbH
!> @brief Sets up the mesh for the solver MSC.Marc
!--------------------------------------------------------------------------------------------------
module mesh
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use prec
use mesh_base
implicit none
private
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integer, public, protected :: &
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mesh_elemType, & !< Element type of the mesh (only support homogeneous meshes)
mesh_Nnodes, & !< total number of nodes in mesh
mesh_Ncellnodes, & !< total number of cell nodes in mesh (including duplicates)
mesh_Ncells, & !< total number of cells in mesh
mesh_maxNsharedElems !< max number of CP elements sharing a node
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integer, dimension(:,:), allocatable, public, protected :: &
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mesh_element, & !DEPRECATED
mesh_sharedElem, & !< entryCount and list of elements containing node
mesh_nodeTwins !< node twins are surface nodes that lie exactly on opposite sides of the mesh (surfaces nodes with equal coordinate values in two dimensions)
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integer, dimension(:,:,:,:), allocatable, public, protected :: &
mesh_ipNeighborhood !< 6 or less neighboring IPs as [element_num, IP_index, neighbor_index that points to me]
real(pReal), public, protected :: &
mesh_unitlength !< physical length of one unit in mesh
real(pReal), dimension(:,:), allocatable, public :: &
mesh_node, & !< node x,y,z coordinates (after deformation! ONLY FOR MARC!!!)
mesh_cellnode !< cell node x,y,z coordinates (after deformation! ONLY FOR MARC!!!)
real(pReal), dimension(:,:), allocatable, public, protected :: &
mesh_ipVolume, & !< volume associated with IP (initially!)
mesh_node0 !< node x,y,z coordinates (initially!)
real(pReal), dimension(:,:,:), allocatable, public, protected :: &
mesh_ipArea !< area of interface to neighboring IP (initially!)
real(pReal), dimension(:,:,:), allocatable, public :: &
mesh_ipCoordinates !< IP x,y,z coordinates (after deformation!)
real(pReal),dimension(:,:,:,:), allocatable, public, protected :: &
mesh_ipAreaNormal !< area normal of interface to neighboring IP (initially!)
logical, dimension(3), public, protected :: mesh_periodicSurface !< flag indicating periodic outer surfaces (used for fluxes)
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integer, dimension(:,:), allocatable, private :: &
mesh_cellnodeParent !< cellnode's parent element ID, cellnode's intra-element ID
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integer,dimension(:,:,:), allocatable, private :: &
mesh_cell !< cell connectivity for each element,ip/cell
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integer, dimension(:,:,:), allocatable, private :: &
FE_cellface !< list of intra-cell cell node IDs that constitute the cell faces of a specific type of cell
! These definitions should actually reside in the FE-solver specific part (different for MARC/ABAQUS)
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! Hence, I suggest to prefix with "FE_"
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integer, parameter, public :: &
FE_Nelemtypes = 13, &
FE_Ngeomtypes = 10, &
FE_Ncelltypes = 4, &
FE_maxNipNeighbors = 6, &
FE_maxmaxNnodesAtIP = 8, & !< max number of (equivalent) nodes attached to an IP
FE_maxNmatchingNodesPerFace = 4, &
FE_maxNfaces = 6, &
FE_maxNcellnodes = 64, &
FE_maxNcellnodesPerCell = 8, &
FE_maxNcellfaces = 6, &
FE_maxNcellnodesPerCellface = 4
integer, dimension(FE_Ngeomtypes), parameter, private :: FE_Nfaces = & !< number of faces of a specific type of element geometry
int([ &
3, & ! element 6 (2D 3node 1ip)
3, & ! element 125 (2D 6node 3ip)
4, & ! element 11 (2D 4node 4ip)
4, & ! element 27 (2D 8node 9ip)
4, & ! element 134 (3D 4node 1ip)
4, & ! element 127 (3D 10node 4ip)
5, & ! element 136 (3D 6node 6ip)
6, & ! element 117 (3D 8node 1ip)
6, & ! element 7 (3D 8node 8ip)
6 & ! element 21 (3D 20node 27ip)
],pInt)
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integer, dimension(FE_Ngeomtypes), parameter, private :: FE_NmatchingNodes = & !< number of nodes that are needed for face matching in a specific type of element geometry
int([ &
3, & ! element 6 (2D 3node 1ip)
3, & ! element 125 (2D 6node 3ip)
4, & ! element 11 (2D 4node 4ip)
4, & ! element 27 (2D 8node 9ip)
4, & ! element 134 (3D 4node 1ip)
4, & ! element 127 (3D 10node 4ip)
6, & ! element 136 (3D 6node 6ip)
8, & ! element 117 (3D 8node 1ip)
8, & ! element 7 (3D 8node 8ip)
8 & ! element 21 (3D 20node 27ip)
],pInt)
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integer, dimension(FE_maxNfaces,FE_Ngeomtypes), parameter, private :: &
FE_NmatchingNodesPerFace = & !< number of matching nodes per face in a specific type of element geometry
reshape(int([ &
2,2,2,0,0,0, & ! element 6 (2D 3node 1ip)
2,2,2,0,0,0, & ! element 125 (2D 6node 3ip)
2,2,2,2,0,0, & ! element 11 (2D 4node 4ip)
2,2,2,2,0,0, & ! element 27 (2D 8node 9ip)
3,3,3,3,0,0, & ! element 134 (3D 4node 1ip)
3,3,3,3,0,0, & ! element 127 (3D 10node 4ip)
3,4,4,4,3,0, & ! element 136 (3D 6node 6ip)
4,4,4,4,4,4, & ! element 117 (3D 8node 1ip)
4,4,4,4,4,4, & ! element 7 (3D 8node 8ip)
4,4,4,4,4,4 & ! element 21 (3D 20node 27ip)
],pInt),[FE_maxNipNeighbors,FE_Ngeomtypes])
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integer, dimension(FE_maxNmatchingNodesPerFace,FE_maxNfaces,FE_Ngeomtypes), &
parameter, private :: FE_face = & !< List of node indices on each face of a specific type of element geometry
reshape(int([&
1,2,0,0 , & ! element 6 (2D 3node 1ip)
2,3,0,0 , &
3,1,0,0 , &
0,0,0,0 , &
0,0,0,0 , &
0,0,0,0 , &
1,2,0,0 , & ! element 125 (2D 6node 3ip)
2,3,0,0 , &
3,1,0,0 , &
0,0,0,0 , &
0,0,0,0 , &
0,0,0,0 , &
1,2,0,0 , & ! element 11 (2D 4node 4ip)
2,3,0,0 , &
3,4,0,0 , &
4,1,0,0 , &
0,0,0,0 , &
0,0,0,0 , &
1,2,0,0 , & ! element 27 (2D 8node 9ip)
2,3,0,0 , &
3,4,0,0 , &
4,1,0,0 , &
0,0,0,0 , &
0,0,0,0 , &
1,2,3,0 , & ! element 134 (3D 4node 1ip)
1,4,2,0 , &
2,3,4,0 , &
1,3,4,0 , &
0,0,0,0 , &
0,0,0,0 , &
1,2,3,0 , & ! element 127 (3D 10node 4ip)
1,4,2,0 , &
2,4,3,0 , &
1,3,4,0 , &
0,0,0,0 , &
0,0,0,0 , &
1,2,3,0 , & ! element 136 (3D 6node 6ip)
1,4,5,2 , &
2,5,6,3 , &
1,3,6,4 , &
4,6,5,0 , &
0,0,0,0 , &
1,2,3,4 , & ! element 117 (3D 8node 1ip)
2,1,5,6 , &
3,2,6,7 , &
4,3,7,8 , &
4,1,5,8 , &
8,7,6,5 , &
1,2,3,4 , & ! element 7 (3D 8node 8ip)
2,1,5,6 , &
3,2,6,7 , &
4,3,7,8 , &
4,1,5,8 , &
8,7,6,5 , &
1,2,3,4 , & ! element 21 (3D 20node 27ip)
2,1,5,6 , &
3,2,6,7 , &
4,3,7,8 , &
4,1,5,8 , &
8,7,6,5 &
],pInt),[FE_maxNmatchingNodesPerFace,FE_maxNfaces,FE_Ngeomtypes])
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integer, dimension(FE_Ncelltypes), parameter, private :: FE_NcellnodesPerCellface = & !< number of cell nodes per cell face in a specific cell type
int([&
2, & ! (2D 3node)
2, & ! (2D 4node)
3, & ! (3D 4node)
4 & ! (3D 8node)
],pInt)
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integer, dimension(FE_Ncelltypes), parameter, private :: FE_NipNeighbors = & !< number of ip neighbors / cell faces in a specific cell type
int([&
3, & ! (2D 3node)
4, & ! (2D 4node)
4, & ! (3D 4node)
6 & ! (3D 8node)
],pInt)
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integer, private :: &
mesh_Nelems, & !< total number of elements in mesh (including non-DAMASK elements)
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mesh_NelemSets
character(len=64), dimension(:), allocatable, private :: &
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mesh_nameElemSet
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integer, dimension(:,:), allocatable, private :: &
mesh_mapElemSet !< list of elements in elementSet
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integer, dimension(:,:), allocatable, target, private :: &
mesh_mapFEtoCPelem, & !< [sorted FEid, corresponding CPid]
mesh_mapFEtoCPnode !< [sorted FEid, corresponding CPid]
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integer, private :: &
MarcVersion, & !< Version of input file format (Marc only)
hypoelasticTableStyle, & !< Table style (Marc only)
initialcondTableStyle !< Table style (Marc only)
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integer, dimension(:), allocatable, private :: &
Marc_matNumber !< array of material numbers for hypoelastic material (Marc only)
public :: &
mesh_init, &
mesh_build_cellnodes, &
mesh_build_ipVolumes, &
mesh_build_ipCoordinates, &
mesh_cellCenterCoordinates, &
mesh_FEasCP
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private :: &
mesh_get_damaskOptions, &
mesh_build_cellconnectivity, &
mesh_build_ipAreas, &
FE_mapElemtype, &
mesh_build_FEdata, &
mesh_build_nodeTwins, &
mesh_build_sharedElems, &
mesh_build_ipNeighborhood, &
mesh_marc_get_fileFormat, &
mesh_marc_get_tableStyles, &
mesh_marc_get_matNumber, &
mesh_marc_count_nodesAndElements, &
mesh_marc_count_elementSets, &
mesh_marc_map_elementSets, &
mesh_marc_map_Elements, &
mesh_marc_map_nodes, &
mesh_marc_build_nodes, &
mesh_marc_build_elements
type, public, extends(tMesh) :: tMesh_marc
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contains
procedure, pass(self) :: tMesh_marc_init
generic, public :: init => tMesh_marc_init
end type tMesh_marc
type(tMesh_marc), public, protected :: theMesh
contains
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subroutine tMesh_marc_init(self,elemType,nodes)
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class(tMesh_marc) :: self
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real(pReal), dimension(:,:), intent(in) :: nodes
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integer, intent(in) :: elemType
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call self%tMesh%init('mesh',elemType,nodes)
end subroutine tMesh_marc_init
!--------------------------------------------------------------------------------------------------
!> @brief initializes the mesh by calling all necessary private routines the mesh module
!! Order and routines strongly depend on type of solver
!--------------------------------------------------------------------------------------------------
subroutine mesh_init(ip,el)
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use DAMASK_interface
use IO, only: &
IO_open_InputFile, &
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IO_error
use debug, only: &
debug_e, &
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debug_i, &
debug_level, &
debug_mesh, &
debug_levelBasic
use numerics, only: &
usePingPong, &
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numerics_unitlength, &
worldrank
use FEsolving, only: &
modelName, &
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calcMode, &
FEsolving_execElem, &
FEsolving_execIP
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integer, intent(in) :: el, ip
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integer, parameter :: FILEUNIT = 222
integer :: j, fileFormatVersion, elemType
integer :: &
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mesh_maxNelemInSet, &
mesh_NcpElems
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logical :: myDebug
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write(6,'(/,a)') ' <<<+- mesh init -+>>>'
mesh_unitlength = numerics_unitlength ! set physical extent of a length unit in mesh
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myDebug = (iand(debug_level(debug_mesh),debug_levelBasic) /= 0)
call IO_open_inputFile(FILEUNIT,modelName) ! parse info from input file...
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if (myDebug) write(6,'(a)') ' Opened input file'; flush(6)
MarcVersion = mesh_marc_get_fileFormat(FILEUNIT)
fileFormatVersion = MarcVersion
if (myDebug) write(6,'(a)') ' Got input file format'; flush(6)
call mesh_marc_get_tableStyles(initialcondTableStyle,hypoelasticTableStyle,FILEUNIT)
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if (myDebug) write(6,'(a)') ' Got table styles'; flush(6)
if (fileFormatVersion > 12) then
Marc_matNumber = mesh_marc_get_matNumber(FILEUNIT,hypoelasticTableStyle)
if (myDebug) write(6,'(a)') ' Got hypoleastic material number'; flush(6)
endif
call mesh_marc_count_nodesAndElements(mesh_nNodes, mesh_nElems, FILEUNIT)
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if (myDebug) write(6,'(a)') ' Counted nodes/elements'; flush(6)
call mesh_marc_count_elementSets(mesh_NelemSets,mesh_maxNelemInSet,FILEUNIT)
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if (myDebug) write(6,'(a)') ' Counted element sets'; flush(6)
allocate(mesh_nameElemSet(mesh_NelemSets)); mesh_nameElemSet = 'n/a'
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allocate(mesh_mapElemSet(1+mesh_maxNelemInSet,mesh_NelemSets),source=0)
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call mesh_marc_map_elementSets(mesh_nameElemSet,mesh_mapElemSet,FILEUNIT)
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if (myDebug) write(6,'(a)') ' Mapped element sets'; flush(6)
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mesh_NcpElems = mesh_nElems
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if (myDebug) write(6,'(a)') ' Counted CP elements'; flush(6)
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allocate (mesh_mapFEtoCPelem(2,mesh_NcpElems), source = 0)
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call mesh_marc_map_elements(hypoelasticTableStyle,mesh_nameElemSet,mesh_mapElemSet,mesh_NcpElems,FILEUNIT)
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if (myDebug) write(6,'(a)') ' Mapped elements'; flush(6)
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allocate (mesh_mapFEtoCPnode(2,mesh_Nnodes),source=0)
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call mesh_marc_map_nodes(mesh_Nnodes,FILEUNIT) !ToDo: don't work on global variables
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if (myDebug) write(6,'(a)') ' Mapped nodes'; flush(6)
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call mesh_marc_build_nodes(FILEUNIT) !ToDo: don't work on global variables
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mesh_node = mesh_node0
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if (myDebug) write(6,'(a)') ' Built nodes'; flush(6)
elemType = mesh_marc_count_cpSizes(FILEUNIT)
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if (myDebug) write(6,'(a)') ' Counted CP sizes'; flush(6)
call theMesh%init(elemType,mesh_node0)
call theMesh%setNelems(mesh_NcpElems)
call mesh_marc_build_elements(FILEUNIT)
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if (myDebug) write(6,'(a)') ' Built elements'; flush(6)
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call mesh_get_damaskOptions(mesh_periodicSurface,FILEUNIT)
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if (myDebug) write(6,'(a)') ' Got DAMASK options'; flush(6)
close (FILEUNIT)
call mesh_build_FEdata ! get properties of the different types of elements
call mesh_build_cellconnectivity
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if (myDebug) write(6,'(a)') ' Built cell connectivity'; flush(6)
mesh_cellnode = mesh_build_cellnodes(mesh_node,mesh_Ncellnodes)
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if (myDebug) write(6,'(a)') ' Built cell nodes'; flush(6)
call mesh_build_ipCoordinates
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if (myDebug) write(6,'(a)') ' Built IP coordinates'; flush(6)
call mesh_build_ipVolumes
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if (myDebug) write(6,'(a)') ' Built IP volumes'; flush(6)
call mesh_build_ipAreas
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if (myDebug) write(6,'(a)') ' Built IP areas'; flush(6)
call mesh_build_nodeTwins
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if (myDebug) write(6,'(a)') ' Built node twins'; flush(6)
call mesh_build_sharedElems
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if (myDebug) write(6,'(a)') ' Built shared elements'; flush(6)
call mesh_build_ipNeighborhood
if (myDebug) write(6,'(a)') ' Built IP neighborhood'; flush(6)
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if (usePingPong .and. (mesh_Nelems /= theMesh%nElems)) &
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call IO_error(600) ! ping-pong must be disabled when having non-DAMASK elements
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if (debug_e < 1 .or. debug_e > theMesh%nElems) &
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call IO_error(602,ext_msg='element') ! selected element does not exist
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if (debug_i < 1 .or. debug_i > theMesh%elem%nIPs) &
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call IO_error(602,ext_msg='IP') ! selected element does not have requested IP
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FEsolving_execElem = [ 1,theMesh%nElems ] ! parallel loop bounds set to comprise all DAMASK elements
allocate(FEsolving_execIP(2,theMesh%nElems), source=1) ! parallel loop bounds set to comprise from first IP...
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FEsolving_execIP(2,:) = theMesh%elem%nIPs
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allocate(calcMode(theMesh%elem%nIPs,theMesh%nElems))
calcMode = .false. ! pretend to have collected what first call is asking (F = I)
calcMode(ip,mesh_FEasCP('elem',el)) = .true. ! first ip,el needs to be already pingponged to "calc"
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theMesh%homogenizationAt = mesh_element(3,:)
theMesh%microstructureAt = mesh_element(4,:)
end subroutine mesh_init
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!--------------------------------------------------------------------------------------------------
!> @brief Figures out version of Marc input file format
!--------------------------------------------------------------------------------------------------
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integer function mesh_marc_get_fileFormat(fileUnit)
use IO, only: &
IO_lc, &
IO_intValue, &
IO_stringValue, &
IO_stringPos
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integer, intent(in) :: fileUnit
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integer, allocatable, dimension(:) :: chunkPos
character(len=300) line
rewind(fileUnit)
do
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read (fileUnit,'(A300)',END=620) line
chunkPos = IO_stringPos(line)
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if ( IO_lc(IO_stringValue(line,chunkPos,1)) == 'version') then
mesh_marc_get_fileFormat = IO_intValue(line,chunkPos,2)
exit
endif
enddo
620 end function mesh_marc_get_fileFormat
!--------------------------------------------------------------------------------------------------
!> @brief Figures out table styles for initial cond and hypoelastic
!--------------------------------------------------------------------------------------------------
subroutine mesh_marc_get_tableStyles(initialcond, hypoelastic,fileUnit)
use IO, only: &
IO_lc, &
IO_intValue, &
IO_stringValue, &
IO_stringPos
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integer, intent(out) :: initialcond, hypoelastic
integer, intent(in) :: fileUnit
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integer, allocatable, dimension(:) :: chunkPos
character(len=300) line
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initialcond = 0
hypoelastic = 0
rewind(fileUnit)
do
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read (fileUnit,'(A300)',END=620) line
chunkPos = IO_stringPos(line)
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if ( IO_lc(IO_stringValue(line,chunkPos,1)) == 'table' .and. chunkPos(1) > 5) then
initialcond = IO_intValue(line,chunkPos,4)
hypoelastic = IO_intValue(line,chunkPos,5)
exit
endif
enddo
620 end subroutine mesh_marc_get_tableStyles
!--------------------------------------------------------------------------------------------------
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!> @brief Figures out material number of hypoelastic material
!--------------------------------------------------------------------------------------------------
function mesh_marc_get_matNumber(fileUnit,tableStyle)
use IO, only: &
IO_lc, &
IO_intValue, &
IO_stringValue, &
IO_stringPos
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integer, intent(in) :: fileUnit, tableStyle
integer, dimension(:), allocatable :: mesh_marc_get_matNumber
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integer, allocatable, dimension(:) :: chunkPos
integer :: i, j, data_blocks
character(len=300) line
rewind(fileUnit)
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data_blocks = 1
do
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read (fileUnit,'(A300)',END=620) line
chunkPos = IO_stringPos(line)
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if ( IO_lc(IO_stringValue(line,chunkPos,1)) == 'hypoelastic') then
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read (fileUnit,'(A300)',END=620) line
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if (len(trim(line))/=0) then
chunkPos = IO_stringPos(line)
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data_blocks = IO_intValue(line,chunkPos,1)
endif
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allocate(mesh_marc_get_matNumber(data_blocks), source = 0)
do i=1,data_blocks ! read all data blocks
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read (fileUnit,'(A300)',END=620) line
chunkPos = IO_stringPos(line)
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mesh_marc_get_matNumber(i) = IO_intValue(line,chunkPos,1)
do j=1_pint,2 + tableStyle ! read 2 or 3 remaining lines of data block
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read (fileUnit,'(A300)') line
enddo
enddo
exit
endif
enddo
620 end function mesh_marc_get_matNumber
!--------------------------------------------------------------------------------------------------
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!> @brief Count overall number of nodes and elements
!--------------------------------------------------------------------------------------------------
subroutine mesh_marc_count_nodesAndElements(nNodes, nElems, fileUnit)
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use IO, only: &
IO_lc, &
IO_stringValue, &
IO_stringPos, &
IO_IntValue
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integer, intent(in) :: fileUnit
integer, intent(out) :: nNodes, nElems
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integer, allocatable, dimension(:) :: chunkPos
character(len=300) line
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nNodes = 0
nElems = 0
rewind(fileUnit)
do
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read (fileUnit,'(A300)',END=620) line
chunkPos = IO_stringPos(line)
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if ( IO_lc(IO_StringValue(line,chunkPos,1)) == 'sizing') &
nElems = IO_IntValue (line,chunkPos,3)
if ( IO_lc(IO_StringValue(line,chunkPos,1)) == 'coordinates') then
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read (fileUnit,'(A300)') line
chunkPos = IO_stringPos(line)
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nNodes = IO_IntValue (line,chunkPos,2)
exit ! assumes that "coordinates" comes later in file
endif
enddo
620 end subroutine mesh_marc_count_nodesAndElements
!--------------------------------------------------------------------------------------------------
!> @brief Count overall number of element sets in mesh.
!--------------------------------------------------------------------------------------------------
subroutine mesh_marc_count_elementSets(nElemSets,maxNelemInSet,fileUnit)
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use IO, only: &
IO_lc, &
IO_stringValue, &
IO_stringPos, &
IO_countContinuousIntValues
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integer, intent(in) :: fileUnit
integer, intent(out) :: nElemSets, maxNelemInSet
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integer, allocatable, dimension(:) :: chunkPos
character(len=300) :: line
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nElemSets = 0
maxNelemInSet = 0
rewind(fileUnit)
do
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read (fileUnit,'(A300)',END=620) line
chunkPos = IO_stringPos(line)
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if ( IO_lc(IO_StringValue(line,chunkPos,1)) == 'define' .and. &
IO_lc(IO_StringValue(line,chunkPos,2)) == 'element' ) then
nElemSets = nElemSets + 1
maxNelemInSet = max(maxNelemInSet, IO_countContinuousIntValues(fileUnit))
endif
enddo
620 end subroutine mesh_marc_count_elementSets
!--------------------------------------------------------------------------------------------------
!> @brief map element sets
!--------------------------------------------------------------------------------------------------
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subroutine mesh_marc_map_elementSets(nameElemSet,mapElemSet,fileUnit)
use IO, only: IO_lc, &
IO_stringValue, &
IO_stringPos, &
IO_continuousIntValues
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integer, intent(in) :: fileUnit
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character(len=64), dimension(:), intent(out) :: &
nameElemSet
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integer, dimension(:,:), intent(out) :: &
mapElemSet
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integer, allocatable, dimension(:) :: chunkPos
character(len=300) :: line
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integer :: elemSet
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elemSet = 0
rewind(fileUnit)
do
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read (fileUnit,'(A300)',END=640) line
chunkPos = IO_stringPos(line)
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if( (IO_lc(IO_stringValue(line,chunkPos,1)) == 'define' ) .and. &
(IO_lc(IO_stringValue(line,chunkPos,2)) == 'element' ) ) then
elemSet = elemSet+1
nameElemSet(elemSet) = trim(IO_stringValue(line,chunkPos,4))
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mapElemSet(:,elemSet) = IO_continuousIntValues(fileUnit,size(mapElemSet,1)-1,nameElemSet,mapElemSet,size(nameElemSet))
endif
enddo
640 end subroutine mesh_marc_map_elementSets
!--------------------------------------------------------------------------------------------------
!> @brief Maps elements from FE ID to internal (consecutive) representation.
!--------------------------------------------------------------------------------------------------
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subroutine mesh_marc_map_elements(tableStyle,nameElemSet,mapElemSet,nElems,fileUnit)
use math, only: math_sort
use IO, only: IO_lc, &
IO_intValue, &
IO_stringValue, &
IO_stringPos, &
IO_continuousIntValues
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integer, intent(in) :: fileUnit,tableStyle,nElems
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character(len=64), intent(in), dimension(:) :: nameElemSet
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integer, dimension(:,:), intent(in) :: &
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mapElemSet
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integer, allocatable, dimension(:) :: chunkPos
character(len=300) :: line, &
tmp
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integer, dimension (1+nElems) :: contInts
integer :: i,cpElem
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cpElem = 0
contInts = 0
rewind(fileUnit)
do
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read (fileUnit,'(A300)',END=660) line
chunkPos = IO_stringPos(line)
if (MarcVersion < 13) then ! Marc 2016 or earlier
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if( IO_lc(IO_stringValue(line,chunkPos,1)) == 'hypoelastic' ) then
do i=1,3+TableStyle ! skip three (or four if new table style!) lines
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read (fileUnit,'(A300)') line
enddo
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contInts = IO_continuousIntValues(fileUnit,nElems,nameElemSet,&
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mapElemSet,size(nameElemSet))
exit
endif
else ! Marc2017 and later
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if ( IO_lc(IO_stringValue(line,chunkPos,1)) == 'connectivity') then
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read (fileUnit,'(A300)',END=660) line
chunkPos = IO_stringPos(line)
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if(any(Marc_matNumber==IO_intValue(line,chunkPos,6))) then
do
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read (fileUnit,'(A300)',END=660) line
chunkPos = IO_stringPos(line)
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tmp = IO_lc(IO_stringValue(line,chunkPos,1))
if (verify(trim(tmp),"0123456789")/=0) then ! found keyword
exit
else
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contInts(1) = contInts(1) + 1
read (tmp,*) contInts(contInts(1)+1)
endif
enddo
endif
endif
endif
enddo
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660 do i = 1,contInts(1)
cpElem = cpElem+1
mesh_mapFEtoCPelem(1,cpElem) = contInts(1+i)
mesh_mapFEtoCPelem(2,cpElem) = cpElem
enddo
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call math_sort(mesh_mapFEtoCPelem,1,int(size(mesh_mapFEtoCPelem,2),pInt)) ! should be mesh_NcpElems
end subroutine mesh_marc_map_elements
!--------------------------------------------------------------------------------------------------
!> @brief Maps node from FE ID to internal (consecutive) representation.
!--------------------------------------------------------------------------------------------------
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subroutine mesh_marc_map_nodes(nNodes,fileUnit)
use math, only: math_sort
use IO, only: IO_lc, &
IO_stringValue, &
IO_stringPos, &
IO_fixedIntValue
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integer, intent(in) :: fileUnit, nNodes
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integer, allocatable, dimension(:) :: chunkPos
character(len=300) line
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integer, dimension (nNodes) :: node_count
integer :: i
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node_count = 0
rewind(fileUnit)
do
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read (fileUnit,'(A300)',END=650) line
chunkPos = IO_stringPos(line)
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if( IO_lc(IO_stringValue(line,chunkPos,1)) == 'coordinates' ) then
read (fileUnit,'(A300)') line ! skip crap line
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do i = 1,nNodes
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read (fileUnit,'(A300)') line
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mesh_mapFEtoCPnode(1,i) = IO_fixedIntValue (line,[0,10],1)
mesh_mapFEtoCPnode(2,i) = i
enddo
exit
endif
enddo
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650 call math_sort(mesh_mapFEtoCPnode,1,int(size(mesh_mapFEtoCPnode,2),pInt))
end subroutine mesh_marc_map_nodes
!--------------------------------------------------------------------------------------------------
!> @brief store x,y,z coordinates of all nodes in mesh.
!--------------------------------------------------------------------------------------------------
subroutine mesh_marc_build_nodes(fileUnit)
use IO, only: &
IO_lc, &
IO_stringValue, &
IO_stringPos, &
IO_fixedIntValue, &
IO_fixedNoEFloatValue
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integer, intent(in) :: fileUnit
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integer, dimension(5), parameter :: node_ends = int([0,10,30,50,70],pInt)
integer, allocatable, dimension(:) :: chunkPos
character(len=300) :: line
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integer :: i,j,m
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allocate ( mesh_node0 (3,mesh_Nnodes), source=0.0_pReal)
rewind(fileUnit)
do
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read (fileUnit,'(A300)',END=670) line
chunkPos = IO_stringPos(line)
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if( IO_lc(IO_stringValue(line,chunkPos,1)) == 'coordinates' ) then
read (fileUnit,'(A300)') line ! skip crap line
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do i=1,mesh_Nnodes
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read (fileUnit,'(A300)') line
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m = mesh_FEasCP('node',IO_fixedIntValue(line,node_ends,1))
do j = 1,3
mesh_node0(j,m) = mesh_unitlength * IO_fixedNoEFloatValue(line,node_ends,j+1)
enddo
enddo
exit
endif
enddo
670 mesh_node = mesh_node0
end subroutine mesh_marc_build_nodes
!--------------------------------------------------------------------------------------------------
!> @brief Gets maximum count of nodes, IPs, IP neighbors, and cellnodes among cpElements.
!! Sets global values 'mesh_maxNnodes', 'mesh_maxNips', 'mesh_maxNipNeighbors',
!! and 'mesh_maxNcellnodes'
!--------------------------------------------------------------------------------------------------
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integer function mesh_marc_count_cpSizes(fileUnit)
use IO, only: IO_lc, &
IO_error, &
IO_stringValue, &
IO_stringPos, &
IO_intValue, &
IO_skipChunks
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use element
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integer, intent(in) :: fileUnit
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type(tElement) :: tempEl
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integer, allocatable, dimension(:) :: chunkPos
character(len=300) :: line
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integer :: i,t,g,e,c
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t = -1
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rewind(fileUnit)
do
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read (fileUnit,'(A300)',END=630) line
chunkPos = IO_stringPos(line)
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if( IO_lc(IO_stringValue(line,chunkPos,1)) == 'connectivity' ) then
read (fileUnit,'(A300)') line ! Garbage line
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do i=1,mesh_Nelems ! read all elements
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read (fileUnit,'(A300)') line
chunkPos = IO_stringPos(line) ! limit to id and type
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if (t == -1) then
t = FE_mapElemtype(IO_stringValue(line,chunkPos,2))
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call tempEl%init(t)
mesh_marc_count_cpSizes = t
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else
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if (t /= FE_mapElemtype(IO_stringValue(line,chunkPos,2))) call IO_error(0) !ToDo: error message
endif
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call IO_skipChunks(fileUnit,tempEl%nNodes-(chunkPos(1)-2))
enddo
exit
endif
enddo
630 end function mesh_marc_count_cpSizes
!--------------------------------------------------------------------------------------------------
!> @brief Store FEid, type, mat, tex, and node list per element.
!! Allocates global array 'mesh_element'
!--------------------------------------------------------------------------------------------------
subroutine mesh_marc_build_elements(fileUnit)
use IO, only: IO_lc, &
IO_stringValue, &
IO_fixedNoEFloatValue, &
IO_skipChunks, &
IO_stringPos, &
IO_intValue, &
IO_continuousIntValues, &
IO_error
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integer, intent(in) :: fileUnit
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integer, allocatable, dimension(:) :: chunkPos
character(len=300) line
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integer, dimension(1+theMesh%nElems) :: contInts
integer :: i,j,t,sv,myVal,e,nNodesAlreadyRead
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allocate(mesh_element(4+theMesh%elem%nNodes,theMesh%nElems), source=0)
mesh_elemType = -1
rewind(fileUnit)
do
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read (fileUnit,'(A300)',END=620) line
chunkPos = IO_stringPos(line)
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if( IO_lc(IO_stringValue(line,chunkPos,1)) == 'connectivity' ) then
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read (fileUnit,'(A300)',END=620) line ! garbage line
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do i = 1,mesh_Nelems
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read (fileUnit,'(A300)',END=620) line
chunkPos = IO_stringPos(line)
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e = mesh_FEasCP('elem',IO_intValue(line,chunkPos,1))
if (e /= 0) then ! disregard non CP elems
mesh_element(1,e) = -1 ! DEPRECATED
t = FE_mapElemtype(IO_StringValue(line,chunkPos,2)) ! elem type
if (mesh_elemType /= t .and. mesh_elemType /= -1) &
call IO_error(191,el=t,ip=mesh_elemType)
mesh_elemType = t
mesh_element(2,e) = t
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nNodesAlreadyRead = 0
do j = 1,chunkPos(1)-2
mesh_element(4+j,e) = mesh_FEasCP('node',IO_IntValue(line,chunkPos,j+2)) ! CP ids of nodes
enddo
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nNodesAlreadyRead = chunkPos(1) - 2
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do while(nNodesAlreadyRead < theMesh%elem%nNodes) ! read on if not all nodes in one line
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read (fileUnit,'(A300)',END=620) line
chunkPos = IO_stringPos(line)
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do j = 1,chunkPos(1)
mesh_element(4+nNodesAlreadyRead+j,e) &
= mesh_FEasCP('node',IO_IntValue(line,chunkPos,j)) ! CP ids of nodes
enddo
nNodesAlreadyRead = nNodesAlreadyRead + chunkPos(1)
enddo
endif
enddo
exit
endif
enddo
620 rewind(fileUnit) ! just in case "initial state" appears before "connectivity"
read (fileUnit,'(A300)',END=630) line
do
chunkPos = IO_stringPos(line)
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if( (IO_lc(IO_stringValue(line,chunkPos,1)) == 'initial') .and. &
(IO_lc(IO_stringValue(line,chunkPos,2)) == 'state') ) then
if (initialcondTableStyle == 2) read (fileUnit,'(A300)',END=630) line ! read extra line for new style
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read (fileUnit,'(A300)',END=630) line ! read line with index of state var
chunkPos = IO_stringPos(line)
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sv = IO_IntValue(line,chunkPos,1) ! figure state variable index
if( (sv == 2).or.(sv == 3) ) then ! only state vars 2 and 3 of interest
read (fileUnit,'(A300)',END=630) line ! read line with value of state var
chunkPos = IO_stringPos(line)
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do while (scan(IO_stringValue(line,chunkPos,1),'+-',back=.true.)>1) ! is noEfloat value?
myVal = nint(IO_fixedNoEFloatValue(line,[0,20],1),pInt) ! state var's value
if (initialcondTableStyle == 2) then
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read (fileUnit,'(A300)',END=630) line ! read extra line
read (fileUnit,'(A300)',END=630) line ! read extra line
endif
contInts = IO_continuousIntValues& ! get affected elements
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(fileUnit,theMesh%nElems,mesh_nameElemSet,mesh_mapElemSet,mesh_NelemSets)
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do i = 1,contInts(1)
e = mesh_FEasCP('elem',contInts(1+i))
mesh_element(1+sv,e) = myVal
enddo
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if (initialcondTableStyle == 0) read (fileUnit,'(A300)',END=630) line ! ignore IP range for old table style
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read (fileUnit,'(A300)',END=630) line
chunkPos = IO_stringPos(line)
enddo
endif
else
read (fileUnit,'(A300)',END=630) line
endif
enddo
630 end subroutine mesh_marc_build_elements
!--------------------------------------------------------------------------------------------------
!> @brief get any additional damask options from input file, sets mesh_periodicSurface
!--------------------------------------------------------------------------------------------------
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subroutine mesh_get_damaskOptions(periodic_surface,fileUnit)
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use IO, only: &
IO_lc, &
IO_stringValue, &
IO_stringPos
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integer, intent(in) :: fileUnit
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integer, allocatable, dimension(:) :: chunkPos
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character(len=300) :: line
integer :: myStat
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integer :: chunk, Nchunks
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character(len=300) :: v
logical, dimension(3) :: periodic_surface
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periodic_surface = .false.
myStat = 0
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rewind(fileUnit)
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do while(myStat == 0)
read (fileUnit,'(a300)',iostat=myStat) line
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chunkPos = IO_stringPos(line)
Nchunks = chunkPos(1)
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if (IO_lc(IO_stringValue(line,chunkPos,1)) == '$damask' .and. Nchunks > 1) then ! found keyword for damask option and there is at least one more chunk to read
select case(IO_lc(IO_stringValue(line,chunkPos,2)))
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case('periodic') ! damask Option that allows to specify periodic fluxes
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do chunk = 3,Nchunks ! loop through chunks (skipping the keyword)
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v = IO_lc(IO_stringValue(line,chunkPos,chunk)) ! chunk matches keyvalues x,y, or z?
mesh_periodicSurface(1) = mesh_periodicSurface(1) .or. v == 'x'
mesh_periodicSurface(2) = mesh_periodicSurface(2) .or. v == 'y'
mesh_periodicSurface(3) = mesh_periodicSurface(3) .or. v == 'z'
enddo
endselect
endif
enddo
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end subroutine mesh_get_damaskOptions
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!--------------------------------------------------------------------------------------------------
!> @brief Split CP elements into cells.
!> @details Build a mapping between cells and the corresponding cell nodes ('mesh_cell').
!> Cell nodes that are also matching nodes are unique in the list of cell nodes,
!> all others (currently) might be stored more than once.
!> Also allocates the 'mesh_node' array.
!--------------------------------------------------------------------------------------------------
subroutine mesh_build_cellconnectivity
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integer, dimension(:), allocatable :: &
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matchingNode2cellnode
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integer, dimension(:,:), allocatable :: &
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cellnodeParent
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integer, dimension(theMesh%elem%Ncellnodes) :: &
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localCellnode2globalCellnode
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integer :: &
e,n,i, &
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matchingNodeID, &
localCellnodeID
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allocate(mesh_cell(FE_maxNcellnodesPerCell,theMesh%elem%nIPs,theMesh%nElems), source=0)
allocate(matchingNode2cellnode(theMesh%nNodes), source=0)
allocate(cellnodeParent(2,theMesh%elem%Ncellnodes*theMesh%nElems), source=0)
mesh_Ncells = theMesh%nElems*theMesh%elem%nIPs
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!--------------------------------------------------------------------------------------------------
! Count cell nodes (including duplicates) and generate cell connectivity list
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mesh_Ncellnodes = 0
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do e = 1,theMesh%nElems
localCellnode2globalCellnode = 0
do i = 1,theMesh%elem%nIPs
do n = 1,theMesh%elem%NcellnodesPerCell
localCellnodeID = theMesh%elem%cell(n,i)
if (localCellnodeID <= FE_NmatchingNodes(theMesh%elem%geomType)) then ! this cell node is a matching node
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matchingNodeID = mesh_element(4+localCellnodeID,e)
if (matchingNode2cellnode(matchingNodeID) == 0) then ! if this matching node does not yet exist in the glbal cell node list ...
mesh_Ncellnodes = mesh_Ncellnodes + 1 ! ... count it as cell node ...
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matchingNode2cellnode(matchingNodeID) = mesh_Ncellnodes ! ... and remember its global ID
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cellnodeParent(1,mesh_Ncellnodes) = e ! ... and where it belongs to
cellnodeParent(2,mesh_Ncellnodes) = localCellnodeID
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endif
mesh_cell(n,i,e) = matchingNode2cellnode(matchingNodeID)
else ! this cell node is no matching node
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if (localCellnode2globalCellnode(localCellnodeID) == 0) then ! if this local cell node does not yet exist in the global cell node list ...
mesh_Ncellnodes = mesh_Ncellnodes + 1 ! ... count it as cell node ...
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localCellnode2globalCellnode(localCellnodeID) = mesh_Ncellnodes ! ... and remember its global ID ...
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cellnodeParent(1,mesh_Ncellnodes) = e ! ... and it belongs to
cellnodeParent(2,mesh_Ncellnodes) = localCellnodeID
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endif
mesh_cell(n,i,e) = localCellnode2globalCellnode(localCellnodeID)
endif
enddo
enddo
enddo
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allocate(mesh_cellnodeParent(2,mesh_Ncellnodes))
allocate(mesh_cellnode(3,mesh_Ncellnodes))
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forall(n = 1:mesh_Ncellnodes)
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mesh_cellnodeParent(1,n) = cellnodeParent(1,n)
mesh_cellnodeParent(2,n) = cellnodeParent(2,n)
endforall
end subroutine mesh_build_cellconnectivity
!--------------------------------------------------------------------------------------------------
!> @brief Calculate position of cellnodes from the given position of nodes
!> Build list of cellnodes' coordinates.
!> Cellnode coordinates are calculated from a weighted sum of node coordinates.
!--------------------------------------------------------------------------------------------------
function mesh_build_cellnodes(nodes,Ncellnodes)
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integer, intent(in) :: Ncellnodes !< requested number of cellnodes
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real(pReal), dimension(3,mesh_Nnodes), intent(in) :: nodes
real(pReal), dimension(3,Ncellnodes) :: mesh_build_cellnodes
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integer :: &
e,n,m, &
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localCellnodeID
real(pReal), dimension(3) :: &
myCoords
mesh_build_cellnodes = 0.0_pReal
!$OMP PARALLEL DO PRIVATE(e,localCellnodeID,myCoords)
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do n = 1,Ncellnodes ! loop over cell nodes
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e = mesh_cellnodeParent(1,n)
localCellnodeID = mesh_cellnodeParent(2,n)
myCoords = 0.0_pReal
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do m = 1,theMesh%elem%nNodes
myCoords = myCoords + nodes(1:3,mesh_element(4+m,e)) &
* theMesh%elem%cellNodeParentNodeWeights(m,localCellnodeID)
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enddo
mesh_build_cellnodes(1:3,n) = myCoords / sum(theMesh%elem%cellNodeParentNodeWeights(:,localCellnodeID))
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enddo
!$OMP END PARALLEL DO
end function mesh_build_cellnodes
!--------------------------------------------------------------------------------------------------
!> @brief Calculates IP volume. Allocates global array 'mesh_ipVolume'
!> @details The IP volume is calculated differently depending on the cell type.
!> 2D cells assume an element depth of one in order to calculate the volume.
!> For the hexahedral cell we subdivide the cell into subvolumes of pyramidal
!> shape with a cell face as basis and the central ip at the tip. This subvolume is
!> calculated as an average of four tetrahedals with three corners on the cell face
!> and one corner at the central ip.
!--------------------------------------------------------------------------------------------------
subroutine mesh_build_ipVolumes
use math, only: &
math_volTetrahedron, &
math_areaTriangle
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integer :: e,t,g,c,i,m,f,n
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real(pReal), dimension(FE_maxNcellnodesPerCellface,FE_maxNcellfaces) :: subvolume
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allocate(mesh_ipVolume(theMesh%elem%nIPs,theMesh%nElems),source=0.0_pReal)
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!$OMP PARALLEL DO PRIVATE(t,g,c,m,subvolume)
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do e = 1,theMesh%nElems ! loop over cpElems
t = mesh_element(2,e) ! get element type
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g = theMesh%elem%geomType
c = theMesh%elem%cellType
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select case (c)
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case (1) ! 2D 3node
forall (i = 1:theMesh%elem%nIPs) & ! loop over ips=cells in this element
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mesh_ipVolume(i,e) = math_areaTriangle(mesh_cellnode(1:3,mesh_cell(1,i,e)), &
mesh_cellnode(1:3,mesh_cell(2,i,e)), &
mesh_cellnode(1:3,mesh_cell(3,i,e)))
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case (2) ! 2D 4node
forall (i = 1:theMesh%elem%nIPs) & ! loop over ips=cells in this element
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mesh_ipVolume(i,e) = math_areaTriangle(mesh_cellnode(1:3,mesh_cell(1,i,e)), & ! here we assume a planar shape, so division in two triangles suffices
mesh_cellnode(1:3,mesh_cell(2,i,e)), &
mesh_cellnode(1:3,mesh_cell(3,i,e))) &
+ math_areaTriangle(mesh_cellnode(1:3,mesh_cell(3,i,e)), &
mesh_cellnode(1:3,mesh_cell(4,i,e)), &
mesh_cellnode(1:3,mesh_cell(1,i,e)))
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case (3) ! 3D 4node
forall (i = 1:theMesh%elem%nIPs) & ! loop over ips=cells in this element
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mesh_ipVolume(i,e) = math_volTetrahedron(mesh_cellnode(1:3,mesh_cell(1,i,e)), &
mesh_cellnode(1:3,mesh_cell(2,i,e)), &
mesh_cellnode(1:3,mesh_cell(3,i,e)), &
mesh_cellnode(1:3,mesh_cell(4,i,e)))
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case (4) ! 3D 8node
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m = FE_NcellnodesPerCellface(c)
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do i = 1,theMesh%elem%nIPs ! loop over ips=cells in this element
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subvolume = 0.0_pReal
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forall(f = 1:FE_NipNeighbors(c), n = 1:FE_NcellnodesPerCellface(c)) &
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subvolume(n,f) = math_volTetrahedron(&
mesh_cellnode(1:3,mesh_cell(FE_cellface( n ,f,c),i,e)), &
mesh_cellnode(1:3,mesh_cell(FE_cellface(1+mod(n ,m),f,c),i,e)), &
mesh_cellnode(1:3,mesh_cell(FE_cellface(1+mod(n+1,m),f,c),i,e)), &
mesh_ipCoordinates(1:3,i,e))
mesh_ipVolume(i,e) = 0.5_pReal * sum(subvolume) ! each subvolume is based on four tetrahedrons, altough the face consists of only two triangles -> averaging factor two
enddo
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end select
enddo
!$OMP END PARALLEL DO
end subroutine mesh_build_ipVolumes
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!--------------------------------------------------------------------------------------------------
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!> @brief Calculates IP Coordinates. Allocates global array 'mesh_ipCoordinates'
! Called by all solvers in mesh_init in order to initialize the ip coordinates.
! Later on the current ip coordinates are directly prvided by the spectral solver and by Abaqus,
! so no need to use this subroutine anymore; Marc however only provides nodal displacements,
! so in this case the ip coordinates are always calculated on the basis of this subroutine.
! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
! FOR THE MOMENT THIS SUBROUTINE ACTUALLY CALCULATES THE CELL CENTER AND NOT THE IP COORDINATES,
! AS THE IP IS NOT (ALWAYS) LOCATED IN THE CENTER OF THE IP VOLUME.
! HAS TO BE CHANGED IN A LATER VERSION.
! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!--------------------------------------------------------------------------------------------------
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subroutine mesh_build_ipCoordinates
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integer :: e,t,g,c,i,n
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real(pReal), dimension(3) :: myCoords
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if (.not. allocated(mesh_ipCoordinates)) &
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allocate(mesh_ipCoordinates(3,theMesh%elem%nIPs,theMesh%nElems),source=0.0_pReal)
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!$OMP PARALLEL DO PRIVATE(t,g,c,myCoords)
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do e = 1,theMesh%nElems ! loop over cpElems
t = mesh_element(2,e) ! get element type
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g = theMesh%elem%geomType
c = theMesh%elem%cellType
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do i = 1,theMesh%elem%nIPs
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myCoords = 0.0_pReal
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do n = 1,theMesh%elem%nCellnodesPerCell
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myCoords = myCoords + mesh_cellnode(1:3,mesh_cell(n,i,e))
enddo
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mesh_ipCoordinates(1:3,i,e) = myCoords / real(theMesh%elem%nCellnodesPerCell,pReal)
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enddo
enddo
!$OMP END PARALLEL DO
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end subroutine mesh_build_ipCoordinates
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!--------------------------------------------------------------------------------------------------
!> @brief Calculates cell center coordinates.
!--------------------------------------------------------------------------------------------------
pure function mesh_cellCenterCoordinates(ip,el)
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integer, intent(in) :: el, & !< element number
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ip !< integration point number
real(pReal), dimension(3) :: mesh_cellCenterCoordinates !< x,y,z coordinates of the cell center of the requested IP cell
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integer :: t,g,c,n
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t = mesh_element(2,el) ! get element type
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g = theMesh%elem%geomType
c = theMesh%elem%cellType
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mesh_cellCenterCoordinates = 0.0_pReal
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do n = 1,theMesh%elem%nCellnodesPerCell
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mesh_cellCenterCoordinates = mesh_cellCenterCoordinates + mesh_cellnode(1:3,mesh_cell(n,ip,el))
enddo
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mesh_cellCenterCoordinates = mesh_cellCenterCoordinates / real(theMesh%elem%nCellnodesPerCell,pReal)
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end function mesh_cellCenterCoordinates
!--------------------------------------------------------------------------------------------------
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!> @brief calculation of IP interface areas, allocate globals '_ipArea', and '_ipAreaNormal'
!--------------------------------------------------------------------------------------------------
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subroutine mesh_build_ipAreas
use math, only: &
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math_cross
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integer :: e,t,g,c,i,f,n,m
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real(pReal), dimension (3,FE_maxNcellnodesPerCellface) :: nodePos, normals
real(pReal), dimension(3) :: normal
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allocate(mesh_ipArea(theMesh%elem%nIPneighbors,theMesh%elem%nIPs,theMesh%nElems), source=0.0_pReal)
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allocate(mesh_ipAreaNormal(3,theMesh%elem%nIPneighbors,theMesh%elem%nIPs,theMesh%nElems), source=0.0_pReal)
!$OMP PARALLEL DO PRIVATE(t,g,c,nodePos,normal,normals)
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do e = 1,theMesh%nElems ! loop over cpElems
t = mesh_element(2,e) ! get element type
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g = theMesh%elem%geomType
c = theMesh%elem%cellType
select case (c)
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case (1,2) ! 2D 3 or 4 node
do i = 1,theMesh%elem%nIPs
do f = 1,FE_NipNeighbors(c) ! loop over cell faces
forall(n = 1:FE_NcellnodesPerCellface(c)) &
nodePos(1:3,n) = mesh_cellnode(1:3,mesh_cell(FE_cellface(n,f,c),i,e))
normal(1) = nodePos(2,2) - nodePos(2,1) ! x_normal = y_connectingVector
normal(2) = -(nodePos(1,2) - nodePos(1,1)) ! y_normal = -x_connectingVector
normal(3) = 0.0_pReal
mesh_ipArea(f,i,e) = norm2(normal)
mesh_ipAreaNormal(1:3,f,i,e) = normal / norm2(normal) ! ensure unit length of area normal
enddo
enddo
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case (3) ! 3D 4node
do i = 1,theMesh%elem%nIPs
do f = 1,FE_NipNeighbors(c) ! loop over cell faces
forall(n = 1:FE_NcellnodesPerCellface(c)) &
nodePos(1:3,n) = mesh_cellnode(1:3,mesh_cell(FE_cellface(n,f,c),i,e))
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normal = math_cross(nodePos(1:3,2) - nodePos(1:3,1), &
nodePos(1:3,3) - nodePos(1:3,1))
mesh_ipArea(f,i,e) = norm2(normal)
mesh_ipAreaNormal(1:3,f,i,e) = normal / norm2(normal) ! ensure unit length of area normal
enddo
enddo
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case (4) ! 3D 8node
! for this cell type we get the normal of the quadrilateral face as an average of
! four normals of triangular subfaces; since the face consists only of two triangles,
! the sum has to be divided by two; this whole prcedure tries to compensate for
! probable non-planar cell surfaces
m = FE_NcellnodesPerCellface(c)
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do i = 1,theMesh%elem%nIPs
do f = 1,FE_NipNeighbors(c) ! loop over cell faces
forall(n = 1:FE_NcellnodesPerCellface(c)) &
nodePos(1:3,n) = mesh_cellnode(1:3,mesh_cell(FE_cellface(n,f,c),i,e))
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forall(n = 1:FE_NcellnodesPerCellface(c)) &
normals(1:3,n) = 0.5_pReal &
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* math_cross(nodePos(1:3,1+mod(n ,m)) - nodePos(1:3,n), &
nodePos(1:3,1+mod(n+1,m)) - nodePos(1:3,n))
normal = 0.5_pReal * sum(normals,2)
mesh_ipArea(f,i,e) = norm2(normal)
mesh_ipAreaNormal(1:3,f,i,e) = normal / norm2(normal)
enddo
enddo
end select
enddo
!$OMP END PARALLEL DO
end subroutine mesh_build_ipAreas
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!--------------------------------------------------------------------------------------------------
!> @brief assignment of twin nodes for each cp node, allocate globals '_nodeTwins'
!--------------------------------------------------------------------------------------------------
subroutine mesh_build_nodeTwins
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integer dir, & ! direction of periodicity
node, &
minimumNode, &
maximumNode, &
n1, &
n2
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integer, dimension(mesh_Nnodes+1) :: minimumNodes, maximumNodes ! list of surface nodes (minimum and maximum coordinate value) with first entry giving the number of nodes
real(pReal) minCoord, maxCoord, & ! extreme positions in one dimension
tolerance ! tolerance below which positions are assumed identical
real(pReal), dimension(3) :: distance ! distance between two nodes in all three coordinates
logical, dimension(mesh_Nnodes) :: unpaired
allocate(mesh_nodeTwins(3,mesh_Nnodes))
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mesh_nodeTwins = 0
tolerance = 0.001_pReal * minval(mesh_ipVolume) ** 0.333_pReal
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do dir = 1,3 ! check periodicity in directions of x,y,z
if (mesh_periodicSurface(dir)) then ! only if periodicity is requested
!*** find out which nodes sit on the surface
!*** and have a minimum or maximum position in this dimension
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minimumNodes = 0
maximumNodes = 0
minCoord = minval(mesh_node0(dir,:))
maxCoord = maxval(mesh_node0(dir,:))
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do node = 1,mesh_Nnodes ! loop through all nodes and find surface nodes
if (abs(mesh_node0(dir,node) - minCoord) <= tolerance) then
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minimumNodes(1) = minimumNodes(1) + 1
minimumNodes(minimumNodes(1)+1) = node
elseif (abs(mesh_node0(dir,node) - maxCoord) <= tolerance) then
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maximumNodes(1) = maximumNodes(1) + 1
maximumNodes(maximumNodes(1)+1) = node
endif
enddo
!*** find the corresponding node on the other side with the same position in this dimension
unpaired = .true.
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do n1 = 1,minimumNodes(1)
minimumNode = minimumNodes(n1+1)
if (unpaired(minimumNode)) then
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do n2 = 1,maximumNodes(1)
maximumNode = maximumNodes(n2+1)
distance = abs(mesh_node0(:,minimumNode) - mesh_node0(:,maximumNode))
if (sum(distance) - distance(dir) <= tolerance) then ! minimum possible distance (within tolerance)
mesh_nodeTwins(dir,minimumNode) = maximumNode
mesh_nodeTwins(dir,maximumNode) = minimumNode
unpaired(maximumNode) = .false. ! remember this node, we don't have to look for his partner again
exit
endif
enddo
endif
enddo
endif
enddo
end subroutine mesh_build_nodeTwins
!--------------------------------------------------------------------------------------------------
!> @brief get maximum count of shared elements among cpElements and build list of elements shared
!! by each node in mesh. Allocate globals '_maxNsharedElems' and '_sharedElem'
!--------------------------------------------------------------------------------------------------
subroutine mesh_build_sharedElems
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integer(pint) e, & ! element index
g, & ! element type
node, & ! CP node index
n, & ! node index per element
myDim, & ! dimension index
nodeTwin ! node twin in the specified dimension
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integer, dimension (mesh_Nnodes) :: node_count
integer, dimension(:), allocatable :: node_seen
allocate(node_seen(maxval(FE_NmatchingNodes)))
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node_count = 0
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do e = 1,theMesh%nElems
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g = theMesh%elem%geomType
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node_seen = 0 ! reset node duplicates
do n = 1,FE_NmatchingNodes(g) ! check each node of element
node = mesh_element(4+n,e)
if (all(node_seen /= node)) then
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node_count(node) = node_count(node) + 1 ! if FE node not yet encountered -> count it
do myDim = 1,3 ! check in each dimension...
nodeTwin = mesh_nodeTwins(myDim,node)
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if (nodeTwin > 0) & ! if I am a twin of some node...
node_count(nodeTwin) = node_count(nodeTwin) + 1 ! -> count me again for the twin node
enddo
endif
node_seen(n) = node ! remember this node to be counted already
enddo
enddo
mesh_maxNsharedElems = int(maxval(node_count),pInt) ! most shared node
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allocate(mesh_sharedElem(1+mesh_maxNsharedElems,mesh_Nnodes),source=0)
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do e = 1,theMesh%nElems
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g = theMesh%elem%geomType
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node_seen = 0
do n = 1,FE_NmatchingNodes(g)
node = mesh_element(4+n,e)
if (all(node_seen /= node)) then
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mesh_sharedElem(1,node) = mesh_sharedElem(1,node) + 1 ! count for each node the connected elements
mesh_sharedElem(mesh_sharedElem(1,node)+1,node) = e ! store the respective element id
do myDim = 1,3 ! check in each dimension...
nodeTwin = mesh_nodeTwins(myDim,node)
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if (nodeTwin > 0) then ! if i am a twin of some node...
mesh_sharedElem(1,nodeTwin) = mesh_sharedElem(1,nodeTwin) + 1 ! ...count me again for the twin
mesh_sharedElem(mesh_sharedElem(1,nodeTwin)+1,nodeTwin) = e ! store the respective element id
endif
enddo
endif
node_seen(n) = node
enddo
enddo
end subroutine mesh_build_sharedElems
!--------------------------------------------------------------------------------------------------
!> @brief build up of IP neighborhood, allocate globals '_ipNeighborhood'
!--------------------------------------------------------------------------------------------------
subroutine mesh_build_ipNeighborhood
use math, only: &
math_mul3x3
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integer :: myElem, & ! my CP element index
myIP, &
myType, & ! my element type
myFace, &
neighbor, & ! neighor index
neighboringIPkey, & ! positive integer indicating the neighboring IP (for intra-element) and negative integer indicating the face towards neighbor (for neighboring element)
candidateIP, &
neighboringType, & ! element type of neighbor
NlinkedNodes, & ! number of linked nodes
twin_of_linkedNode, & ! node twin of a specific linkedNode
NmatchingNodes, & ! number of matching nodes
dir, & ! direction of periodicity
matchingElem, & ! CP elem number of matching element
matchingFace, & ! face ID of matching element
a, anchor, &
neighboringIP, &
neighboringElem, &
pointingToMe
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integer, dimension(FE_maxmaxNnodesAtIP) :: &
linkedNodes = 0, &
matchingNodes
logical checkTwins
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allocate(mesh_ipNeighborhood(3,theMesh%elem%nIPneighbors,theMesh%elem%nIPs,theMesh%nElems))
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mesh_ipNeighborhood = 0
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do myElem = 1,theMesh%nElems ! loop over cpElems
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myType = theMesh%elem%geomType
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do myIP = 1,theMesh%elem%nIPs
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do neighbor = 1,FE_NipNeighbors(theMesh%elem%cellType) ! loop over neighbors of IP
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neighboringIPkey = theMesh%elem%IPneighbor(neighbor,myIP)
!*** if the key is positive, the neighbor is inside the element
!*** that means, we have already found our neighboring IP
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if (neighboringIPkey > 0) then
mesh_ipNeighborhood(1,neighbor,myIP,myElem) = myElem
mesh_ipNeighborhood(2,neighbor,myIP,myElem) = neighboringIPkey
!*** if the key is negative, the neighbor resides in a neighboring element
!*** that means, we have to look through the face indicated by the key and see which element is behind that face
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elseif (neighboringIPkey < 0) then ! neighboring element's IP
myFace = -neighboringIPkey
call mesh_faceMatch(myElem, myFace, matchingElem, matchingFace) ! get face and CP elem id of face match
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if (matchingElem > 0) then ! found match?
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neighboringType = theMesh%elem%geomType
!*** trivial solution if neighbor has only one IP
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if (theMesh%elem%nIPs == 1) then
mesh_ipNeighborhood(1,neighbor,myIP,myElem) = matchingElem
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mesh_ipNeighborhood(2,neighbor,myIP,myElem) = 1
cycle
endif
!*** find those nodes which build the link to the neighbor
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NlinkedNodes = 0
linkedNodes = 0
do a = 1,theMesh%elem%maxNnodeAtIP
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anchor = theMesh%elem%NnodeAtIP(a,myIP)
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if (anchor /= 0) then ! valid anchor node
if (any(FE_face(:,myFace,myType) == anchor)) then ! ip anchor sits on face?
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NlinkedNodes = NlinkedNodes + 1
linkedNodes(NlinkedNodes) = mesh_element(4+anchor,myElem) ! CP id of anchor node
else ! something went wrong with the linkage, since not all anchors sit on my face
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NlinkedNodes = 0
linkedNodes = 0
exit
endif
endif
enddo
!*** loop through the ips of my neighbor
!*** and try to find an ip with matching nodes
!*** also try to match with node twins
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checkCandidateIP: do candidateIP = 1,theMesh%elem%nIPs
NmatchingNodes = 0
matchingNodes = 0
do a = 1,theMesh%elem%maxNnodeAtIP
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anchor = theMesh%elem%NnodeAtIP(a,candidateIP)
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if (anchor /= 0) then ! valid anchor node
if (any(FE_face(:,matchingFace,neighboringType) == anchor)) then ! sits on matching face?
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NmatchingNodes = NmatchingNodes + 1
matchingNodes(NmatchingNodes) = mesh_element(4+anchor,matchingElem) ! CP id of neighbor's anchor node
else ! no matching, because not all nodes sit on the matching face
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NmatchingNodes = 0
matchingNodes = 0
exit
endif
endif
enddo
if (NmatchingNodes /= NlinkedNodes) & ! this ip has wrong count of anchors on face
cycle checkCandidateIP
!*** check "normal" nodes whether they match or not
checkTwins = .false.
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do a = 1,NlinkedNodes
if (all(matchingNodes /= linkedNodes(a))) then ! this linkedNode does not match any matchingNode
checkTwins = .true.
exit ! no need to search further
endif
enddo
!*** if no match found, then also check node twins
if(checkTwins) then
dir = int(maxloc(abs(mesh_ipAreaNormal(1:3,neighbor,myIP,myElem)),1),pInt) ! check for twins only in direction of the surface normal
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do a = 1,NlinkedNodes
twin_of_linkedNode = mesh_nodeTwins(dir,linkedNodes(a))
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if (twin_of_linkedNode == 0 .or. & ! twin of linkedNode does not exist...
all(matchingNodes /= twin_of_linkedNode)) then ! ... or it does not match any matchingNode
cycle checkCandidateIP ! ... then check next candidateIP
endif
enddo
endif
!*** we found a match !!!
mesh_ipNeighborhood(1,neighbor,myIP,myElem) = matchingElem
mesh_ipNeighborhood(2,neighbor,myIP,myElem) = candidateIP
exit checkCandidateIP
enddo checkCandidateIP
endif ! end of valid external matching
endif ! end of internal/external matching
enddo
enddo
enddo
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do myElem = 1,theMesh%nElems ! loop over cpElems
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myType = theMesh%elem%geomType
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do myIP = 1,theMesh%elem%nIPs
do neighbor = 1,FE_NipNeighbors(theMesh%elem%cellType) ! loop over neighbors of IP
neighboringElem = mesh_ipNeighborhood(1,neighbor,myIP,myElem)
neighboringIP = mesh_ipNeighborhood(2,neighbor,myIP,myElem)
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if (neighboringElem > 0 .and. neighboringIP > 0) then ! if neighbor exists ...
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neighboringType = theMesh%elem%geomType
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do pointingToMe = 1,FE_NipNeighbors(theMesh%elem%cellType) ! find neighboring index that points from my neighbor to myself
if ( myElem == mesh_ipNeighborhood(1,pointingToMe,neighboringIP,neighboringElem) &
.and. myIP == mesh_ipNeighborhood(2,pointingToMe,neighboringIP,neighboringElem)) then ! possible candidate
if (math_mul3x3(mesh_ipAreaNormal(1:3,neighbor,myIP,myElem),&
mesh_ipAreaNormal(1:3,pointingToMe,neighboringIP,neighboringElem)) < 0.0_pReal) then ! area normals have opposite orientation (we have to check that because of special case for single element with two ips and periodicity. In this case the neighbor is identical in two different directions.)
mesh_ipNeighborhood(3,neighbor,myIP,myElem) = pointingToMe ! found match
exit ! so no need to search further
endif
endif
enddo
endif
enddo
enddo
enddo
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contains
!--------------------------------------------------------------------------------------------------
!> @brief find face-matching element of same type
!--------------------------------------------------------------------------------------------------
subroutine mesh_faceMatch(elem, face ,matchingElem, matchingFace)
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integer, intent(out) :: matchingElem, & ! matching CP element ID
matchingFace ! matching face ID
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integer, intent(in) :: face, & ! face ID
elem ! CP elem ID
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integer, dimension(FE_NmatchingNodesPerFace(face,theMesh%elem%geomType)) :: &
myFaceNodes ! global node ids on my face
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integer :: myType, &
candidateType, &
candidateElem, &
candidateFace, &
candidateFaceNode, &
minNsharedElems, &
NsharedElems, &
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lonelyNode = 0, &
i, &
n, &
dir ! periodicity direction
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integer, dimension(:), allocatable :: element_seen
logical checkTwins
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matchingElem = 0
matchingFace = 0
minNsharedElems = mesh_maxNsharedElems + 1 ! init to worst case
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myType =theMesh%elem%geomType
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do n = 1,FE_NmatchingNodesPerFace(face,myType) ! loop over nodes on face
myFaceNodes(n) = mesh_element(4+FE_face(n,face,myType),elem) ! CP id of face node
NsharedElems = mesh_sharedElem(1,myFaceNodes(n)) ! figure # shared elements for this node
if (NsharedElems < minNsharedElems) then
minNsharedElems = NsharedElems ! remember min # shared elems
lonelyNode = n ! remember most lonely node
endif
enddo
allocate(element_seen(minNsharedElems))
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element_seen = 0
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checkCandidate: do i = 1,minNsharedElems ! iterate over lonelyNode's shared elements
candidateElem = mesh_sharedElem(1+i,myFaceNodes(lonelyNode)) ! present candidate elem
if (all(element_seen /= candidateElem)) then ! element seen for the first time?
element_seen(i) = candidateElem
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candidateType = theMesh%elem%geomType
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checkCandidateFace: do candidateFace = 1,FE_maxNipNeighbors ! check each face of candidate
if (FE_NmatchingNodesPerFace(candidateFace,candidateType) &
/= FE_NmatchingNodesPerFace(face,myType) & ! incompatible face
.or. (candidateElem == elem .and. candidateFace == face)) then ! this is my face
cycle checkCandidateFace
endif
checkTwins = .false.
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do n = 1,FE_NmatchingNodesPerFace(candidateFace,candidateType) ! loop through nodes on face
candidateFaceNode = mesh_element(4+FE_face(n,candidateFace,candidateType),candidateElem)
if (all(myFaceNodes /= candidateFaceNode)) then ! candidate node does not match any of my face nodes
checkTwins = .true. ! perhaps the twin nodes do match
exit
endif
enddo
if(checkTwins) then
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checkCandidateFaceTwins: do dir = 1,3
do n = 1,FE_NmatchingNodesPerFace(candidateFace,candidateType) ! loop through nodes on face
candidateFaceNode = mesh_element(4+FE_face(n,candidateFace,candidateType),candidateElem)
if (all(myFaceNodes /= mesh_nodeTwins(dir,candidateFaceNode))) then ! node twin does not match either
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if (dir == 3) then
cycle checkCandidateFace
else
cycle checkCandidateFaceTwins ! try twins in next dimension
endif
endif
enddo
exit checkCandidateFaceTwins
enddo checkCandidateFaceTwins
endif
matchingFace = candidateFace
matchingElem = candidateElem
exit checkCandidate ! found my matching candidate
enddo checkCandidateFace
endif
enddo checkCandidate
end subroutine mesh_faceMatch
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end subroutine mesh_build_ipNeighborhood
!--------------------------------------------------------------------------------------------------
!> @brief mapping of FE element types to internal representation
!--------------------------------------------------------------------------------------------------
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integer function FE_mapElemtype(what)
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use IO, only: IO_lc, IO_error
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character(len=*), intent(in) :: what
select case (IO_lc(what))
case ( '6')
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FE_mapElemtype = 1 ! Two-dimensional Plane Strain Triangle
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case ( '155', &
'125', &
'128')
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FE_mapElemtype = 2 ! Two-dimensional Plane Strain triangle (155: cubic shape function, 125/128: second order isoparametric)
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case ( '11')
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FE_mapElemtype = 3 ! Arbitrary Quadrilateral Plane-strain
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case ( '27')
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FE_mapElemtype = 4 ! Plane Strain, Eight-node Distorted Quadrilateral
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case ( '54')
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FE_mapElemtype = 5 ! Plane Strain, Eight-node Distorted Quadrilateral with reduced integration
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case ( '134')
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FE_mapElemtype = 6 ! Three-dimensional Four-node Tetrahedron
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case ( '157')
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FE_mapElemtype = 7 ! Three-dimensional, Low-order, Tetrahedron, Herrmann Formulations
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case ( '127')
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FE_mapElemtype = 8 ! Three-dimensional Ten-node Tetrahedron
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case ( '136')
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FE_mapElemtype = 9 ! Three-dimensional Arbitrarily Distorted Pentahedral
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case ( '117', &
'123')
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FE_mapElemtype = 10 ! Three-dimensional Arbitrarily Distorted linear hexahedral with reduced integration
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case ( '7')
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FE_mapElemtype = 11 ! Three-dimensional Arbitrarily Distorted Brick
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case ( '57')
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FE_mapElemtype = 12 ! Three-dimensional Arbitrarily Distorted quad hexahedral with reduced integration
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case ( '21')
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FE_mapElemtype = 13 ! Three-dimensional Arbitrarily Distorted quadratic hexahedral
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case default
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call IO_error(error_ID=190,ext_msg=IO_lc(what))
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end select
end function FE_mapElemtype
!--------------------------------------------------------------------------------------------------
!> @brief get properties of different types of finite elements
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!> @details assign globals FE_cellface
!--------------------------------------------------------------------------------------------------
subroutine mesh_build_FEdata
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integer :: me
allocate(FE_cellface(FE_maxNcellnodesPerCellface,FE_maxNcellfaces,FE_Ncelltypes), source=0)
! *** FE_cellface ***
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me = 0
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me = me + 1
FE_cellface(1:FE_NcellnodesPerCellface(me),1:FE_NipNeighbors(me),me) = & ! 2D 3node, VTK_TRIANGLE (5)
reshape(int([&
2,3, &
3,1, &
1,2 &
],pInt),[FE_NcellnodesPerCellface(me),FE_NipNeighbors(me)])
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me = me + 1
FE_cellface(1:FE_NcellnodesPerCellface(me),1:FE_NipNeighbors(me),me) = & ! 2D 4node, VTK_QUAD (9)
reshape(int([&
2,3, &
4,1, &
3,4, &
1,2 &
],pInt),[FE_NcellnodesPerCellface(me),FE_NipNeighbors(me)])
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me = me + 1
FE_cellface(1:FE_NcellnodesPerCellface(me),1:FE_NipNeighbors(me),me) = & ! 3D 4node, VTK_TETRA (10)
reshape(int([&
1,3,2, &
1,2,4, &
2,3,4, &
1,4,3 &
],pInt),[FE_NcellnodesPerCellface(me),FE_NipNeighbors(me)])
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me = me + 1
FE_cellface(1:FE_NcellnodesPerCellface(me),1:FE_NipNeighbors(me),me) = & ! 3D 8node, VTK_HEXAHEDRON (12)
reshape(int([&
2,3,7,6, &
4,1,5,8, &
3,4,8,7, &
1,2,6,5, &
5,6,7,8, &
1,4,3,2 &
],pInt),[FE_NcellnodesPerCellface(me),FE_NipNeighbors(me)])
end subroutine mesh_build_FEdata
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!--------------------------------------------------------------------------------------------------
!> @brief Gives the FE to CP ID mapping by binary search through lookup array
!! valid questions (what) are 'elem', 'node'
!--------------------------------------------------------------------------------------------------
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integer function mesh_FEasCP(what,myID)
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use IO, only: &
IO_lc
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character(len=*), intent(in) :: what
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integer, intent(in) :: myID
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integer, dimension(:,:), pointer :: lookupMap
integer :: lower,upper,center
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mesh_FEasCP = 0
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select case(IO_lc(what(1:4)))
case('elem')
lookupMap => mesh_mapFEtoCPelem
case('node')
lookupMap => mesh_mapFEtoCPnode
case default
return
endselect
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lower = 1
upper = int(size(lookupMap,2),pInt)
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if (lookupMap(1,lower) == myID) then ! check at bounds QUESTION is it valid to extend bounds by 1 and just do binary search w/o init check at bounds?
mesh_FEasCP = lookupMap(2,lower)
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return
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elseif (lookupMap(1,upper) == myID) then
mesh_FEasCP = lookupMap(2,upper)
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return
endif
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binarySearch: do while (upper-lower > 1)
center = (lower+upper)/2
if (lookupMap(1,center) < myID) then
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lower = center
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elseif (lookupMap(1,center) > myID) then
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upper = center
else
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mesh_FEasCP = lookupMap(2,center)
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exit
endif
enddo binarySearch
end function mesh_FEasCP
end module mesh