DAMASK_EICMD/installation/mods_MarcMentat/apply_DAMASK_modifications.sh

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#!/usr/bin/env bash
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DEFAULT_VERSION='2013.1'
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WORKINGDIR="$( cd "$( dirname "$0" )" && pwd )"
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if [ -f $HOME/.damask/damask.conf ]; then
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source $HOME/.damask/damask.conf
else
source /etc/damask.conf
fi
while [ ! -d "$WORKINGDIR/$VERSION" ] || [ -z "$VERSION" ]
do
echo "Input version of MARC/MENTAT installation: [${DEFAULT_VERSION}]"
read VERSION
if [ -z "$VERSION" ]; then
VERSION=${DEFAULT_VERSION}
fi
done
echo "MSC version: $VERSION"
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if [ "x$MSC_ROOT" != "x" ]; then
INSTALLDIR=$MSC_ROOT
fi
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while [ ! -d "$INSTALLDIR" ] || [ -z "$INSTALLDIR" ]
do
echo "Input path of MARC/MENTAT installation:"
read INSTALLDIR
done
INSTALLDIR=${INSTALLDIR%/} # remove trailing slash
echo "MSC installation path: $INSTALLDIR"
BLASDIR=''
BLASTYPE=''
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if [ "x$LAPACK_ROOT" != "x" ]; then
BLASDIR=$LAPACK_ROOT
BLASTYPE='LAPACK'
fi
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if [ "x$ACML_ROOT" != "x" ]; then
BLASDIR=$ACML_ROOT
BLASTYPE='ACML'
fi
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if [ "x$IMKL_ROOT" != "x" ]; then
BLASDIR=$IMKL_ROOT
BLASTYPE='IMKL'
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fi
while [ ! -d "$BLASDIR" ] || [ -z "$BLASDIR" ]
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do
echo "Input type of BLAS installation [IMKL | ACML | LAPACK]:"
read BLASTYPE
echo "Input path of BLAS installation:"
read BLASDIR
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done
BLASDIR=${BLASDIR%/} # remove trailing slash
case $BLASTYPE in
IMKL | imkl)
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BLAS=" -I$BLASDIR/include -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lpthread -lm -Wl,-rpath,$BLASDIR/lib/intel64 -L$BLASDIR/lib/intel64" #I'm not too shure about the include (does that work for linker?)
;;
ACML | acml)
BLAS=" -lacml -Wl,-rpath,$BLASDIR/ifort64_mp/lib -L$BLASDIR/ifort64_mp/lib"
;;
LAPACK | lapack)
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BLAS=" -llapack -Wl,-rpath,$BLASDIR/lib,-rpath,$BLASDIR/lib64 -L$BLASDIR/lib64 -L$BLASDIR/lib"
;;
*)
echo "error, BLAS type must be IMKL, ACML, or LAPACK"
exit
;;
esac
DEFAULT_EDITOR='vi'
EDITOR=''
while [ -z "$EDITOR" ]
do
echo "Input command to invoke your preferred editor: [${DEFAULT_EDITOR}]"
read EDITOR
if [ -z "$EDITOR" ]; then
EDITOR=${DEFAULT_EDITOR}
fi
done
echo "Editor: $EDITOR"
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# tools
echo ''
echo 'copying Marc tools...'
theDIR=$INSTALLDIR/marc$VERSION/tools
for filename in 'comp_damask' \
'comp_damask_l' \
'comp_damask_h' \
'comp_damask_mp' \
'comp_damask_lmp' \
'comp_damask_hmp' \
'run_damask' \
'run_damask_l' \
'run_damask_h' \
'run_damask_mp' \
'run_damask_lmp' \
'run_damask_hmp' \
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'include_linux64'; do
cp $WORKINGDIR/$VERSION/Marc_tools/$filename $theDIR
echo $theDIR/$filename | xargs perl -pi -e "s:%INSTALLDIR%:${INSTALLDIR}:g"
echo $theDIR/$filename | xargs perl -pi -e "s:%VERSION%:${VERSION}:g"
echo $theDIR/$filename | xargs perl -pi -e "s:%BLAS%:${BLAS}:g"
echo $filename
done
# Mentat scripts
echo ''
echo 'copying Mentat scripts...'
theDIR=$INSTALLDIR/mentat$VERSION/bin
for filename in 'edit_window' \
'submit4' \
'submit5' \
'submit6' \
'submit7' \
'submit8' \
'submit9' \
'kill4' \
'kill5' \
'kill6' \
'kill7' \
'kill8' \
'kill9'; do
cp $WORKINGDIR/$VERSION/Mentat_bin/$filename $theDIR
echo $theDIR/$filename | xargs perl -pi -e "s:%INSTALLDIR%:${INSTALLDIR}:g"
echo $theDIR/$filename | xargs perl -pi -e "s:%VERSION%:${VERSION}:g"
echo $theDIR/$filename | xargs perl -pi -e "s:%EDITOR%:${EDITOR}:g"
echo $filename
done
# Mentat scripts
echo ''
echo 'copying Mentat menus...'
theDIR=$INSTALLDIR/mentat$VERSION/menus
for filename in 'job_run.ms'; do
cp $WORKINGDIR/$VERSION/Mentat_menus/$filename $theDIR
echo $theDIR/$filename | xargs perl -pi -e "s:%INSTALLDIR%:${INSTALLDIR}:g"
echo $theDIR/$filename | xargs perl -pi -e "s:%VERSION%:${VERSION}:g"
echo $filename
done
# compile menus
echo ''
echo 'compiling menus...'
$INSTALLDIR/mentat$VERSION/bin/mentat -compile $INSTALLDIR/mentat$VERSION/menus/linux64/main.msb
# setting access rights
echo ''
echo 'setting file access rights...'
chmod 555 $INSTALLDIR/marc$VERSION/tools/run_damask*
chmod 555 $INSTALLDIR/marc$VERSION/tools/comp_damask*
chmod 555 $INSTALLDIR/mentat$VERSION/bin/submit{4..9}
chmod 555 $INSTALLDIR/mentat$VERSION/bin/kill{4..9}
#creating symlinks for run_damask_scripts in /usr/local/bin
BIN_DIR=/usr/local/bin
echo ''
echo "Do you want to create symlinks for run_damask scripts in ${BIN_DIR} [YES/no] ?"
read YESNO
if [ -z "$YESNO" ]; then
YESNO=yes
fi
case $YESNO in
y* | Y* )
echo''
echo 'creating symlinks ...'
echo''
theDIR=$INSTALLDIR/marc$VERSION/tools
for filename in 'run_damask' \
'run_damask_l' \
'run_damask_h' \
'run_damask_mp' \
'run_damask_lmp' \
'run_damask_hmp'; do
echo ${filename:4}$VERSION
ln -s $theDIR/$filename $BIN_DIR/${filename:4}$VERSION
done
;;
esac
echo ''
echo 'done.'