DAMASK_EICMD/processing/post/addMapped.py

161 lines
7.3 KiB
Python
Executable File

#!/usr/bin/env python
# -*- coding: UTF-8 no BOM -*-
import os,re,sys,math,string,damask
from optparse import OptionParser, Option
scriptID = '$Id: addNorm.py 3167 2014-06-06 09:43:28Z p.eisenlohr $'
scriptName = scriptID.split()[1]
# -----------------------------
class extendableOption(Option):
# -----------------------------
# used for definition of new option parser action 'extend', which enables to take multiple option arguments
# taken from online tutorial http://docs.python.org/library/optparse.html
ACTIONS = Option.ACTIONS + ("extend",)
STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",)
TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",)
ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",)
def take_action(self, action, dest, opt, value, values, parser):
if action == "extend":
lvalue = value.split(",")
values.ensure_value(dest, []).extend(lvalue)
else:
Option.take_action(self, action, dest, opt, value, values, parser)
# --------------------------------------------------------------------
# MAIN
# --------------------------------------------------------------------
parser = OptionParser(option_class=extendableOption, usage='%prog options [file[s]]', description = """
Add data in column(s) of second ASCIItable selected from row that is given by the value in a mapping column.
""" + string.replace(scriptID,'\n','\\n')
)
parser.add_option('-a','--asciitable', dest='asciitable', type='string', metavar='FILE',
help='heading of column containing row mapping')
parser.add_option('-c','--map', dest='map', type='string', metavar='LABEL',
help='heading of column containing row mapping')
parser.add_option('-o','--offset', dest='offset', type='int', metavar='n',
help='offset between mapped column value and row')
parser.add_option('-v','--vector', dest='vector', action='extend', type='string', metavar='LABEL',
help='heading of columns containing vector field values')
parser.add_option('-t','--tensor', dest='tensor', action='extend', type='string', metavar='LABEL',
help='heading of columns containing tensor field values')
parser.add_option('-s','--special', dest='special', action='extend', type='string', metavar='LABEL',
help='heading of columns containing field values of special dimension')
parser.add_option('-d','--dimension', dest='N', action='store', type='int', \
help='dimension of special field values [%default]')
parser.set_defaults(vector = [])
parser.set_defaults(tensor = [])
parser.set_defaults(special = [])
parser.set_defaults(offset = 0)
parser.set_defaults(N = 1)
(options,filenames) = parser.parse_args()
if len(options.vector) + len(options.tensor) + len(options.special) == 0:
parser.error('no data column specified...')
datainfo = { # list of requested labels per datatype
'vector': {'len':3,
'label':[]},
'tensor': {'len':9,
'label':[]},
'special': {'len':options.N,
'label':[]},
}
if options.vector != None: datainfo['vector']['label'] += options.vector
if options.tensor != None: datainfo['tensor']['label'] += options.tensor
if options.special != None: datainfo['special']['label'] += options.special
if options.asciitable != None and os.path.isfile(options.asciitable):
mappedTable = damask.ASCIItable(open(options.asciitable),open(options.asciitable),False)
mappedTable.head_read() # read ASCII header info of mapped table
labels = []
indices = []
for datatype,info in datainfo.items():
for label in info['label']:
foundIt = False
for key in ['1_'+label,label]:
if key in mappedTable.labels:
foundIt = True
labels.append(label) # extend labels
indices += range(mappedTable.labels.index(key),
mappedTable.labels.index(key)+datainfo[datatype]['len'])
if not foundIt:
file['croak'].write('column %s not found...\n'%label)
break
mappedTable.data_readArray(indices)
mappedTable.input_close() # close mapped input ASCII table
mappedTable.output_close() # close mapped output (same as input) ASCII table
else:
parser.error("Missing mapped ASCIItable")
if options.map == None:
parser.error("Missing mapping column")
# ------------------------------------------ setup file handles ---------------------------------------
files = []
if filenames == []:
files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr})
else:
for name in filenames:
if os.path.exists(name):
files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w'), 'croak':sys.stderr})
#--- loop over input files ------------------------------------------------------------------------
for file in files:
if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n')
else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n')
table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table
table.head_read() # read ASCII header info
table.info_append(string.replace(scriptID,'\n','\\n') + '\t' + ' '.join(sys.argv[1:]))
# --------------- figure out columns to process
if options.map not in table.labels:
continue
mappedColumn = table.labels.index(options.map)
for label in labels:
table.labels_append(label) # extend ASCII header of current table with new labels
# ------------------------------------------ assemble header ---------------------------------------
table.head_write()
# ------------------------------------------ process data ---------------------------------------
outputAlive = True
while outputAlive and table.data_read(): # read next data line of ASCII table
# file['croak'].write('%i\n'%(int(table.data[mappedColumn])+options.offset-1))
table.data_append(mappedTable.data[int(table.data[mappedColumn])+options.offset-1]) # add all mapped data types
outputAlive = table.data_write() # output processed line
# ------------------------------------------ output result ---------------------------------------
outputAlive and table.output_flush() # just in case of buffered ASCII table
table.input_close() # close input ASCII table
if file['name'] != 'STDIN':
table.output_close() # close output ASCII table
os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new