309 lines
8.5 KiB
Python
309 lines
8.5 KiB
Python
import sys
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import datetime
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import os
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import subprocess
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import shlex
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import fractions
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from functools import reduce
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from optparse import Option
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import numpy as np
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import damask
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# limit visibility
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__all__=[
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'srepr',
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'croak',
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'report',
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'emph','deemph','delete','strikeout',
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'execute',
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'show_progress',
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'scale_to_coprime',
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'return_message',
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'extendableOption',
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'edit_info'
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]
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####################################################################################################
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# Functions
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####################################################################################################
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def srepr(arg,glue = '\n'):
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r"""
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Join arguments with glue string.
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Parameters
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----------
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arg : iterable
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Items to join.
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glue : str, optional
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Defaults to \n.
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"""
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if (not hasattr(arg, "strip") and
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(hasattr(arg, "__getitem__") or
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hasattr(arg, "__iter__"))):
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return glue.join(str(x) for x in arg)
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return arg if isinstance(arg,str) else repr(arg)
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def croak(what, newline = True):
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"""
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Write formated to stderr.
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Parameters
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----------
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what : str or iterable
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Content to be displayed.
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newline : bool, optional
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Separate items of what by newline. Defaults to True.
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"""
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if what is not None:
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sys.stderr.write(srepr(what,glue = '\n') + ('\n' if newline else ''))
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sys.stderr.flush()
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def report(who = None,
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what = None):
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"""
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Reports script and file name.
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DEPRECATED
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"""
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croak( (emph(who)+': ' if who is not None else '') + (what if what is not None else '') + '\n' )
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def emph(what):
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"""Formats string with emphasis."""
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return bcolors.BOLD+srepr(what)+bcolors.ENDC
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def deemph(what):
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"""Formats string with deemphasis."""
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return bcolors.DIM+srepr(what)+bcolors.ENDC
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def delete(what):
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"""Formats string as deleted."""
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return bcolors.DIM+srepr(what)+bcolors.ENDC
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def strikeout(what):
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"""Formats string as strikeout."""
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return bcolors.CROSSOUT+srepr(what)+bcolors.ENDC
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def execute(cmd,
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stream_in = None,
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wd = './',
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env = None):
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"""
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Execute command.
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Parameters
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----------
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cmd : str
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Command to be executed.
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stream_in : file object, optional
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Input (via pipe) for executed process.
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wd : str, optional
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Working directory of process. Defaults to ./ .
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env : dict, optional
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Environment for execution.
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"""
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initialPath = os.getcwd()
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myEnv = os.environ if env is None else env
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os.chdir(wd)
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process = subprocess.Popen(shlex.split(cmd),
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stdout = subprocess.PIPE,
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stderr = subprocess.PIPE,
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stdin = subprocess.PIPE,
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env = myEnv)
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stdout, stderr = [i for i in (process.communicate() if stream_in is None
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else process.communicate(stream_in.read().encode('utf-8')))]
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os.chdir(initialPath)
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stdout = stdout.decode('utf-8').replace('\x08','')
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stderr = stderr.decode('utf-8').replace('\x08','')
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if process.returncode != 0:
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raise RuntimeError(f'{cmd} failed with returncode {process.returncode}')
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return stdout, stderr
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def show_progress(iterable,N_iter=None,prefix='',bar_length=50):
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"""
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Decorate a loop with a status bar.
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Use similar like enumerate.
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Parameters
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----------
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iterable : iterable/function with yield statement
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Iterable (or function with yield statement) to be decorated.
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N_iter : int
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Total # of iterations. Needed if number of iterations can not be obtained as len(iterable).
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prefix : str, optional.
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Prefix string.
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bar_length : int, optional
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Character length of bar. Defaults to 50.
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"""
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status = _ProgressBar(N_iter if N_iter else len(iterable),prefix,bar_length)
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for i,item in enumerate(iterable):
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yield item
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status.update(i)
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def scale_to_coprime(v):
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"""Scale vector to co-prime (relatively prime) integers."""
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MAX_DENOMINATOR = 1000000
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def get_square_denominator(x):
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"""Denominator of the square of a number."""
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return fractions.Fraction(x ** 2).limit_denominator(MAX_DENOMINATOR).denominator
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def lcm(a, b):
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"""Least common multiple."""
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return a * b // np.gcd(a, b)
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m = (np.array(v) * reduce(lcm, map(lambda x: int(get_square_denominator(x)),v)) ** 0.5).astype(np.int)
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m = m//reduce(np.gcd,m)
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if not np.allclose(v[v.nonzero()]/m[v.nonzero()],v[v.nonzero()][0]/m[m.nonzero()][0]):
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raise ValueError(f'Invalid result {m} for input {v}. Insufficient precision?')
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return m
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def edit_info(who):
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now = datetime.datetime.now().astimezone().strftime('%Y-%m-%d %H:%M:%S%z')
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return f'{who} v{damask.version} ({now})'
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####################################################################################################
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# Classes
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####################################################################################################
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class extendableOption(Option):
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"""
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Used for definition of new option parser action 'extend', which enables to take multiple option arguments.
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Adopted from online tutorial http://docs.python.org/library/optparse.html
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DEPRECATED
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"""
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ACTIONS = Option.ACTIONS + ("extend",)
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STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",)
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TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",)
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ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",)
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def take_action(self, action, dest, opt, value, values, parser):
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if action == "extend":
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lvalue = value.split(",")
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values.ensure_value(dest, []).extend(lvalue)
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else:
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Option.take_action(self, action, dest, opt, value, values, parser)
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class _ProgressBar:
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"""
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Report progress of an interation as a status bar.
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Works for 0-based loops, ETA is estimated by linear extrapolation.
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"""
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def __init__(self,total,prefix,bar_length):
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"""
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Inititalize a progress bar to current time as basis for ETA estimation.
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Parameters
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----------
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total : int
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Total # of iterations.
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prefix : str
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Prefix string.
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bar_length : int
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Character length of bar.
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"""
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self.total = total
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self.prefix = prefix
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self.bar_length = bar_length
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self.start_time = datetime.datetime.now()
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self.last_fraction = 0.0
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sys.stderr.write(f"{self.prefix} {'░'*self.bar_length} 0% ETA n/a")
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sys.stderr.flush()
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def update(self,iteration):
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fraction = (iteration+1) / self.total
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filled_length = int(self.bar_length * fraction)
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if filled_length > int(self.bar_length * self.last_fraction):
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bar = '█' * filled_length + '░' * (self.bar_length - filled_length)
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delta_time = datetime.datetime.now() - self.start_time
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remaining_time = (self.total - (iteration+1)) * delta_time / (iteration+1)
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remaining_time -= datetime.timedelta(microseconds=remaining_time.microseconds) # remove μs
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sys.stderr.write(f'\r{self.prefix} {bar} {fraction:>4.0%} ETA {remaining_time}')
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sys.stderr.flush()
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self.last_fraction = fraction
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if iteration == self.total - 1:
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sys.stderr.write('\n')
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sys.stderr.flush()
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class bcolors:
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"""
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ASCII colors.
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https://svn.blender.org/svnroot/bf-blender/trunk/blender/build_files/scons/tools/bcolors.py
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https://stackoverflow.com/questions/287871
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"""
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HEADER = '\033[95m'
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OKBLUE = '\033[94m'
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OKGREEN = '\033[92m'
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WARNING = '\033[93m'
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FAIL = '\033[91m'
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ENDC = '\033[0m'
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BOLD = '\033[1m'
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DIM = '\033[2m'
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UNDERLINE = '\033[4m'
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CROSSOUT = '\033[9m'
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def disable(self):
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self.HEADER = ''
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self.OKBLUE = ''
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self.OKGREEN = ''
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self.WARNING = ''
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self.FAIL = ''
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self.ENDC = ''
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self.BOLD = ''
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self.UNDERLINE = ''
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self.CROSSOUT = ''
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class return_message:
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"""Object with formatted return message."""
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def __init__(self,message):
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"""
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Sets return message.
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Parameters
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----------
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message : str or list of str
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message for output to screen
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"""
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self.message = message
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def __repr__(self):
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"""Return message suitable for interactive shells."""
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return srepr(self.message)
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