122 lines
5.6 KiB
Python
Executable File
122 lines
5.6 KiB
Python
Executable File
#!/usr/bin/env python
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# -*- coding: UTF-8 no BOM -*-
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import os,re,sys,math,string
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import numpy as np
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from optparse import OptionParser
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import damask
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scriptID = string.replace('$Id$','\n','\\n')
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scriptName = scriptID.split()[1][:-3]
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def unravel(item):
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if hasattr(item,'__contains__'): return ' '.join(map(unravel,item))
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else: return str(item)
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# --------------------------------------------------------------------
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# MAIN
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# --------------------------------------------------------------------
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parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
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Add column(s) with derived values according to user defined arithmetic operation between column(s).
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Columns can be specified either by label or index. Use ';' for ',' in functions.
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Numpy is available as np.
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Example: distance to IP coordinates -- "math.sqrt( #ip.x#**2 + #ip.y#**2 + round(#ip.z#;3)**2 )"
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""", version = scriptID)
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parser.add_option('-l','--label', dest='labels', action='extend', metavar='<string LIST>',
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help='(list of) new column labels')
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parser.add_option('-f','--formula', dest='formulas', action='extend', metavar='<string LIST>',
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help='(list of) formulas corresponding to labels')
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parser.set_defaults(labels= [])
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parser.set_defaults(formulas= [])
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(options,filenames) = parser.parse_args()
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if len(options.labels) != len(options.formulas):
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parser.error('number of labels (%i) and formulas (%i) do not match'%(len(options.labels),len(options.formulas)))
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for i in xrange(len(options.formulas)):
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options.formulas[i]=options.formulas[i].replace(';',',')
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# ------------------------------------------ setup file handles ------------------------------------
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files = []
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if filenames == []:
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files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr})
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else:
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for name in filenames:
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if os.path.exists(name):
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files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w'), 'croak':sys.stderr})
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#--- loop over input files ------------------------------------------------------------------------
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for file in files:
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if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n')
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else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n')
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specials = { \
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'_row_': 0,
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}
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table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table
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table.head_read() # read ASCII header info
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table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:]))
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evaluator = {}
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brokenFormula = {}
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for label,formula in zip(options.labels,options.formulas):
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interpolator = []
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for column in re.findall(r'#(.+?)#',formula): # loop over column labels in formula
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formula = formula.replace('#'+column+'#','%f')
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if column in specials:
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interpolator += ['specials["%s"]'%column]
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elif column.isdigit():
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if len(table.labels) > int(column):
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interpolator += ['float(table.data[%i])'%(int(column))]
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else:
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file['croak'].write('column %s not found...\n'%column)
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brokenFormula[label] = True
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else:
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try:
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interpolator += ['float(table.data[%i])'%table.labels.index(column)]
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except:
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file['croak'].write('column %s not found...\n'%column)
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brokenFormula[label] = True
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if label not in brokenFormula:
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evaluator[label] = "'" + formula + "'%(" + ','.join(interpolator) + ")"
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# ------------------------------------------ process data ------------------------------------------
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firstLine=True
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outputAlive = True
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while outputAlive and table.data_read(): # read next data line of ASCII table
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specials['_row_'] += 1 # count row
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# ------------------------------------------ calculate one result to get length of labels ---------
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if firstLine:
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labelLen = {}
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for label in options.labels:
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labelLen[label] = np.size(eval(eval(evaluator[label])))
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# ------------------------------------------ assemble header ---------------------------------------
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for label,formula in zip(options.labels,options.formulas):
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if labelLen[label] == 0:
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brokenFormula[label] = True
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if label not in brokenFormula:
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table.labels_append({True:['%i_%s'%(i+1,label) for i in xrange(labelLen[label])],
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False:label}[labelLen[label]>1] )
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table.head_write()
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firstLine = False
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for label in options.labels: table.data_append(unravel(eval(eval(evaluator[label]))))
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outputAlive = table.data_write() # output processed line
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# ------------------------------------------ output result -----------------------------------------
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outputAlive and table.output_flush() # just in case of buffered ASCII table
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table.input_close() # close input ASCII table (works for stdin)
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table.output_close() # close output ASCII table (works for stdout)
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if file['name'] != 'STDIN':
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os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new
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