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DAMASK_EICMD
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DAMASK_EICMD/processing/setup/setup_processing.py

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#!/usr/bin/env python
# Makes postprocessing routines acessible from everywhere.
import os,sys,glob,string,subprocess
from damask import Environment
from optparse import OptionParser, Option
# -----------------------------
class extendableOption(Option):
# -----------------------------
# used for definition of new option parser action 'extend', which enables to take multiple option arguments
# taken from online tutorial http://docs.python.org/library/optparse.html
ACTIONS = Option.ACTIONS + ("extend",)
STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",)
TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",)
ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",)
def take_action(self, action, dest, opt, value, values, parser):
if action == "extend":
lvalue = value.split(",")
values.ensure_value(dest, []).extend(lvalue)
else:
Option.take_action(self, action, dest, opt, value, values, parser)
########################################################
# MAIN
########################################################
parser = OptionParser(option_class=extendableOption, usage='%prog options', description = """
Sets up the pre and post processing tools of DAMASK
""" + string.replace('$Id$','\n','\\n')
)
compilers = ['intel','ifort','intel32','gfortran','gnu95']
parser.add_option('--F90', '--f90', dest='compiler', type='string', \
help='name of F90 compiler')
parser.set_defaults(compiler = {True:'ifort',False:'gfortran'}[\
subprocess.call(['which', 'ifort'],\
stdout=subprocess.PIPE, stderr=subprocess.PIPE) == 0])
(options,filenames) = parser.parse_args()
if options.compiler not in compilers:
parser.error('compiler switch "--F90" has to be one out of: %s'%(', '.join(compilers)))
f2py_compiler = {
'gfortran': 'gnu95 --f90flags="-fno-range-check -xf95-cpp-input -std=f2008 -fall-intrinsics -DSpectral -fdefault-real-8 -fdefault-double-8 -DFLOAT=8 -DINT=4 -I${DAMASK_ROOT}/lib"',
'gnu95': 'gnu95 --f90flags="-fno-range-check -xf95-cpp-input -std=f2008 -fall-intrinsics -DSpectral -fdefault-real-8 -fdefault-double-8 -DFLOAT=8 -DINT=4 -I${DAMASK_ROOT}/lib"',
'intel32': 'intel --f90flags="-fpp -stand f03 -diag-disable 5268 -assume byterecl -DSpectral -real-size 64 -integer-size 32 -DFLOAT=8 -DINT=4 -I${DAMASK_ROOT}/lib"',
'intel': 'intelem --f90flags="-fpp -stand f03 -diag-disable 5268 -assume byterecl -DSpectral -real-size 64 -integer-size 32 -DFLOAT=8 -DINT=4 -I${DAMASK_ROOT}/lib"',
'ifort': 'intelem --f90flags="-fpp -stand f03 -diag-disable 5268 -assume byterecl -DSpectral -real-size 64 -integer-size 32 -DFLOAT=8 -DINT=4 -I${DAMASK_ROOT}/lib"',
}[options.compiler]
compiler = {
'gfortran': 'gfortran',
'gnu95': 'gfortran',
'intel32': 'ifort',
'intel': 'ifort',
'ifort': 'ifort',
}[options.compiler]
damaskEnv = Environment()
baseDir = damaskEnv.relPath('processing/')
codeDir = damaskEnv.relPath('code/')
if 'ikml' in damaskEnv.pathInfo and damaskEnv.pathInfo['ikml'] != '':
lib_lapack = '' # TODO!!
elif 'acml' in damaskEnv.pathInfo and damaskEnv.pathInfo['acml'] != '':
lib_lapack = '-L%s/%s64/lib -lacml'%(os.path.join(damaskEnv.pathInfo['acml']),compiler) # can we use linker flag?
elif 'lapack' in damaskEnv.pathInfo and damaskEnv.pathInfo['lapack'] != '':
lib_lapack = '-L%s -llapack'%(damaskEnv.pathInfo['lapack']) # see http://cens.ioc.ee/pipermail/f2py-users/2003-December/000621.html
#define ToDo list
bin_link = { \
'pre' : [
'marc_addUserOutput.py',
'mentat_pbcOnBoxMesh.py',
'mentat_spectralBox.py',
'OIMang_hex2cub.py',
'patchFromReconstructedBoundaries.py',
'randomSeeding.py',
'geom_fromAng.py',
'geom_fromMinimalSurface.py',
'geom_fromVoronoiTessellation.py',
'geom_canvas.py',
'geom_check.py',
'geom_rescale.py',
'geom_pack.py',
'geom_unpack.py',
'geom_translate.py',
'geom_vicinityOffset.py',
],
'post' : [
'3Dvisualize.py',
'addCauchy.py',
'addCalculation.py',
'addDeterminant.py',
'addDeviator.py',
'addDivergence.py',
'addCurl.py',
'addMises.py',
'addNorm.py',
'addPK2.py',
'addStrainTensors.py',
'addCompatibilityMismatch.py',
'addDeformedConfiguration.py',
'averageDown.py',
'binXY.py',
'deleteColumn.py',
'deleteInfo.py',
'filterTable.py',
'mentat_colorMap.py',
'postResults.py',
'spectral_iterationCount.py',
'spectral_parseLog.py',
'nodesFromCentroids.py',
'tagLabel.py',
'table2ang',
],
}
compile = { \
'pre' : [
],
'post' : [
],
}
execute = { \
'coreModule' : [
'make tidy',
# The following command is used to compile the fortran files and make the functions defined
# in damask.core.pyf available for python in the module core.so
# It uses the fortran wrapper f2py that is included in the numpy package to construct the
# module core.so out of the fortran code in the f90 files
# For the generation of the pyf file use the following lines:
###########################################################################
#'f2py -h damask.core.pyf' +\
#' --overwrite-signature --no-lower prec.f90 DAMASK_spectral_interface.f90 math.f90 mesh.f90',
###########################################################################
'rm `readlink -f %s`' %(os.path.join(damaskEnv.relPath('lib/damask'),'core.so')),
'f2py damask.core.pyf' +\
' --build-dir ./' +\
' -c --no-lower --fcompiler=%s'%(f2py_compiler) +\
' %s'%'prec.f90'+\
' %s'%'DAMASK_spectral_interface.f90'+\
' %s'%'IO.f90'+\
' %s'%'numerics.f90'+\
' %s'%'debug.f90'+\
' %s'%'math.f90'+\
' %s'%'FEsolving.f90'+\
' %s'%'mesh.f90'+\
' %s'%'spectral_quit.f90'+\
' -L%s/lib -lfftw3'%(damaskEnv.pathInfo['fftw'])+\
' %s'%lib_lapack,
'mv %s `readlink -f %s`' %(os.path.join(codeDir,'core.so'),os.path.join(damaskEnv.relPath('lib/damask'),'core.so')),
]
}
for dir in compile: #there is nothing to compile at the moment
for file in compile[dir]:
src = os.path.abspath(os.path.join(baseDir,dir,file))
if os.path.isfile(src):
try:
os.system('rm %s.exe'%(os.path.splitext(src)[0]))
print 'removing %s.exe '%(os.path.splitext(src)[0])
except:
pass
print 'compiling ',src,'using',compiler
os.system('%s -O2 -o %s.exe %s'%(compiler,os.path.splitext(src)[0],src))
os.chdir(codeDir) # needed for compilation with gfortran and f2py
for tasks in execute:
for cmd in execute[tasks]:
try:
print 'executing...:',cmd
os.system(cmd)
except:
print 'failed..!'
pass
os.chdir(damaskEnv.relPath('processing/setup/'))
modules = glob.glob('*.mod')
for module in modules:
print 'removing', module
os.remove(module)
for dir in bin_link:
for file in bin_link[dir]:
src = os.path.abspath(os.path.join(baseDir,dir,file))
if (file == ''):
sym_link = os.path.abspath(os.path.join(damaskEnv.binDir(),dir))
else:
sym_link = os.path.abspath(os.path.join(damaskEnv.binDir(),os.path.splitext(file)[0]))
print sym_link,'-->',src
if os.path.lexists(sym_link):
os.remove(sym_link)
os.symlink(src,sym_link)
#check if compilation of core module was successful
try:
with open(damaskEnv.relPath('lib/damask/core.so')) as f: pass
except IOError as e:
print '*********\n* core.so not found, compilation of core modules was not successful\n*********'
sys.exit()
f.close
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