976 lines
47 KiB
Fortran
976 lines
47 KiB
Fortran
!--------------------------------------------------------------------------------------------------
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!> @author Vitesh Shah, Max-Planck-Institut für Eisenforschung GmbH
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!> @author Yi-Chin Yang, Max-Planck-Institut für Eisenforschung GmbH
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!> @author Jennifer Nastola, Max-Planck-Institut für Eisenforschung GmbH
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!> @author Martin Diehl, Max-Planck-Institut für Eisenforschung GmbH
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!--------------------------------------------------------------------------------------------------
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module results
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use prec
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use IO
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use HDF5
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use HDF5_utilities
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#ifdef PETSc
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use PETSC
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#endif
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implicit none
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private
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integer(HID_T), public, protected :: tempCoordinates, tempResults
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integer(HID_T), private :: resultsFile, currentIncID, plist_id
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public :: &
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results_init, &
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results_openJobFile, &
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results_closeJobFile, &
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results_addIncrement, &
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results_addGroup, &
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results_openGroup, &
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results_writeVectorDataset, &
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results_setLink, &
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results_removeLink
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contains
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subroutine results_init
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use DAMASK_interface, only: &
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getSolverJobName
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implicit none
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write(6,'(/,a)') ' <<<+- results init -+>>>'
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write(6,'(/,a)') ' Diehl et al., Integrating Materials and Manufacturing Innovation 6(1):83–91, 2017'
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write(6,'(a)') ' https://doi.org/10.1007/s40192-018-0118-7'
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call HDF5_closeFile(HDF5_openFile(trim(getSolverJobName())//'.hdf5','w',.true.))
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end subroutine results_init
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!--------------------------------------------------------------------------------------------------
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!> @brief opens the results file to append data
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!--------------------------------------------------------------------------------------------------
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subroutine results_openJobFile()
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use DAMASK_interface, only: &
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getSolverJobName
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implicit none
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character(len=pStringLen) :: commandLine
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resultsFile = HDF5_openFile(trim(getSolverJobName())//'.hdf5','a',.true.)
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call HDF5_addAttribute(resultsFile,'DADF5',0.1_pReal)
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call HDF5_addAttribute(resultsFile,'DAMASK',DAMASKVERSION)
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call get_command(commandLine)
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call HDF5_addAttribute(resultsFile,'call',trim(commandLine))
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end subroutine results_openJobFile
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!--------------------------------------------------------------------------------------------------
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!> @brief closes the results file
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!--------------------------------------------------------------------------------------------------
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subroutine results_closeJobFile()
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implicit none
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call HDF5_closeFile(resultsFile)
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end subroutine results_closeJobFile
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!--------------------------------------------------------------------------------------------------
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!> @brief closes the results file
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!--------------------------------------------------------------------------------------------------
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subroutine results_addIncrement(inc,time)
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implicit none
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integer(pInt), intent(in) :: inc
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real(pReal), intent(in) :: time
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character(len=pStringLen) :: incChar
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write(incChar,*) inc
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call HDF5_closeGroup(results_addGroup(trim('inc'//trim(adjustl(incChar)))))
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call results_setLink(trim('inc'//trim(adjustl(incChar))),'current')
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call HDF5_addAttribute(resultsFile,'time/s',time,trim('inc'//trim(adjustl(incChar))))
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end subroutine results_addIncrement
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!--------------------------------------------------------------------------------------------------
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!> @brief open a group from the results file
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!--------------------------------------------------------------------------------------------------
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integer(HID_T) function results_openGroup(groupName)
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implicit none
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character(len=*), intent(in) :: groupName
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results_openGroup = HDF5_openGroup(resultsFile,groupName)
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end function results_openGroup
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!--------------------------------------------------------------------------------------------------
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!> @brief adds a new group to the results file
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!--------------------------------------------------------------------------------------------------
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integer(HID_T) function results_addGroup(groupName)
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implicit none
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character(len=*), intent(in) :: groupName
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results_addGroup = HDF5_addGroup(resultsFile,groupName)
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end function results_addGroup
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!--------------------------------------------------------------------------------------------------
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!> @brief set link to object in results file
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!--------------------------------------------------------------------------------------------------
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subroutine results_setLink(path,link)
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use hdf5_utilities, only: &
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HDF5_setLink
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implicit none
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character(len=*), intent(in) :: path, link
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call HDF5_setLink(resultsFile,path,link)
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end subroutine results_setLink
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!--------------------------------------------------------------------------------------------------
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!> @brief remove link to an object
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!--------------------------------------------------------------------------------------------------
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subroutine results_removeLink(link)
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use hdf5
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implicit none
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character(len=*), intent(in) :: link
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integer :: hdferr
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call h5ldelete_f(resultsFile,link, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'results_removeLink: h5ldelete_soft_f ('//trim(link)//')')
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end subroutine results_removeLink
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!--------------------------------------------------------------------------------------------------
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!> @brief stores a vector dataset in a group
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!--------------------------------------------------------------------------------------------------
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subroutine results_writeVectorDataset(group,dataset,label,SIunit)
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implicit none
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character(len=*), intent(in) :: SIunit,label,group
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real(pReal), intent(inout), dimension(:,:) :: dataset
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integer(HID_T) :: groupHandle
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groupHandle = results_openGroup(group)
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call HDF5_write(groupHandle,dataset,label)
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if (HDF5_objectExists(groupHandle,label)) &
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call HDF5_addAttribute(groupHandle,'Unit',SIunit,label)
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call HDF5_closeGroup(groupHandle)
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end subroutine results_writeVectorDataset
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!--------------------------------------------------------------------------------------------------
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!> @brief adds the unique mapping from spatial position and constituent ID to results
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_mappingPhase(mapping,mapping2,Nconstituents,material_phase,phase_name,dataspace_size,mpiOffset,mpiOffset_phase)
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use hdf5
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implicit none
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integer(pInt), intent(in) :: Nconstituents, dataspace_size, mpiOffset
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integer(pInt), intent(in), dimension(:) :: mapping, mapping2
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character(len=*), intent(in), dimension(:) :: phase_name
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integer(pInt), intent(in), dimension(:) :: mpiOffset_phase
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integer(pInt), intent(in), dimension(:,:,:) :: material_phase
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character(len=len(phase_name(1))), dimension(:), allocatable :: namesNA
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character(len=len(phase_name(1))) :: a
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character(len=*), parameter :: n = "NULL"
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integer(pInt) :: hdferr, NmatPoints, i, j, k
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integer(HID_T) :: mapping_id, dtype_id, dset_id, space_id, name_id, position_id, plist_id, memspace
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integer(HID_T) :: dt5_id ! Memory datatype identifier
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integer(SIZE_T) :: typesize, type_sizec, type_sizei, type_size
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integer(HSIZE_T), dimension(2) :: counter
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integer(HSSIZE_T), dimension(2) :: fileOffset
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integer(pInt), dimension(:,:), allocatable :: arrOffset
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a = n
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allocate(namesNA(0:size(phase_name)),source=[a,phase_name])
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NmatPoints = size(mapping,1)/Nconstituents
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mapping_ID = results_openGroup("current/mapGeometry")
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allocate(arrOffset(Nconstituents,NmatPoints))
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do i=1_pInt, NmatPoints
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do k=1_pInt, Nconstituents
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do j=1_pInt, size(phase_name)
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if(material_phase(k,1,i) == j) &
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arrOffset(k,i) = mpiOffset_phase(j)
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enddo
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enddo
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enddo
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!--------------------------------------------------------------------------------------------------
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! create dataspace
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call h5screate_simple_f(2, int([Nconstituents,dataspace_size],HSIZE_T), space_id, hdferr, &
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int([Nconstituents,dataspace_size],HSIZE_T))
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeMapping')
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!--------------------------------------------------------------------------------------------------
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! compound type
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! First calculate total size by calculating sizes of each member
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!
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CALL h5tcopy_f(H5T_NATIVE_CHARACTER, dt5_id, hdferr)
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typesize = len(phase_name(1))
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CALL h5tset_size_f(dt5_id, typesize, hdferr)
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CALL h5tget_size_f(dt5_id, type_sizec, hdferr)
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CALL h5tget_size_f(H5T_STD_I32LE,type_sizei, hdferr)
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type_size = type_sizec + type_sizei
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call h5tcreate_f(H5T_COMPOUND_F, type_size, dtype_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeMapping: h5tcreate_f dtype_id')
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call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt5_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5tinsert_f 0')
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call h5tinsert_f(dtype_id, "Position", type_sizec, H5T_STD_I32LE, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5tinsert_f 2')
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!--------------------------------------------------------------------------------------------------
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! create Dataset
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call h5dcreate_f(mapping_id, 'constitutive', dtype_id, space_id, dset_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase')
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!--------------------------------------------------------------------------------------------------
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! Create memory types (one compound datatype for each member)
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call h5tcreate_f(H5T_COMPOUND_F, int(type_sizec,SIZE_T), name_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5tcreate_f instance_id')
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call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt5_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5tinsert_f instance_id')
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call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), position_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5tcreate_f position_id')
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call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_STD_I32LE, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5tinsert_f position_id')
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!--------------------------------------------------------------------------------------------------
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! Define and select hyperslabs
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counter(1) = Nconstituents ! how big i am
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counter(2) = NmatPoints
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fileOffset(1) = 0 ! where i start to write my data
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fileOffset(2) = mpiOffset
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call h5screate_simple_f(2, counter, memspace, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5screate_simple_f')
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call h5dget_space_f(dset_id, space_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5dget_space_f')
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call h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, fileOffset, counter, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5sselect_hyperslab_f')
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!--------------------------------------------------------------------------------------------------
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! Create property list for collective dataset write
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#ifdef PETSc
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call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5pcreate_f')
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call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5pset_dxpl_mpio_f')
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#endif
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!--------------------------------------------------------------------------------------------------
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! write data by fields in the datatype. Fields order is not important.
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call h5dwrite_f(dset_id, name_id, reshape(namesNA(mapping),[Nconstituents,NmatPoints]), &
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int([Nconstituents, dataspace_size],HSIZE_T), hdferr, &
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file_space_id = space_id, mem_space_id = memspace, xfer_prp = plist_id)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5dwrite_f position_id')
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call h5dwrite_f(dset_id, position_id, reshape(mapping2-1_pInt,[Nconstituents,NmatPoints])+arrOffset, &
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int([Nconstituents, dataspace_size],HSIZE_T), hdferr, &
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file_space_id = space_id, mem_space_id = memspace, xfer_prp = plist_id)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5dwrite_f instance_id')
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!--------------------------------------------------------------------------------------------------
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! close types, dataspaces
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call h5tclose_f(dtype_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5tclose_f dtype_id')
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call h5tclose_f(position_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5tclose_f position_id')
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call h5tclose_f(name_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5tclose_f name_id ')
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call h5tclose_f(dt5_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5tclose_f dt5_id')
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call h5dclose_f(dset_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5dclose_f')
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call h5sclose_f(space_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5sclose_f space_id')
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call h5sclose_f(memspace, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5sclose_f memspace')
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call h5pclose_f(plist_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingPhase: h5pclose_f')
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call HDF5_closeGroup(mapping_ID)
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end subroutine HDF5_mappingPhase
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!--------------------------------------------------------------------------------------------------
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!> @brief adds the backward mapping from spatial position and constituent ID to results
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_backwardMappingPhase(material_phase,phasememberat,phase_name,dataspace_size,mpiOffset,mpiOffset_phase)
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use hdf5
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implicit none
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integer(pInt), intent(in), dimension(:,:,:) :: material_phase, phasememberat
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character(len=*), intent(in), dimension(:) :: phase_name
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integer(pInt), intent(in), dimension(:) :: dataspace_size, mpiOffset_phase
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integer(pInt), intent(in) :: mpiOffset
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integer(pInt) :: hdferr, NmatPoints, Nconstituents, i, j
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integer(HID_T) :: mapping_id, dtype_id, dset_id, space_id, position_id, plist_id, memspace
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integer(SIZE_T) :: type_size
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integer(pInt), dimension(:,:), allocatable :: arr
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integer(HSIZE_T), dimension(1) :: counter
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integer(HSSIZE_T), dimension(1) :: fileOffset
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character(len=64) :: phaseID
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Nconstituents = size(phasememberat,1)
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NmatPoints = count(material_phase /=0_pInt)/Nconstituents
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allocate(arr(2,NmatPoints*Nconstituents))
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do i=1_pInt, NmatPoints
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do j=Nconstituents-1_pInt, 0_pInt, -1_pInt
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arr(1,Nconstituents*i-j) = i-1_pInt
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enddo
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enddo
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arr(2,:) = pack(material_phase,material_phase/=0_pInt)
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do i=1_pInt, size(phase_name)
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write(phaseID, '(i0)') i
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mapping_ID = results_openGroup('/current/constitutive/'//trim(phaseID)//'_'//phase_name(i))
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NmatPoints = count(material_phase == i)
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!--------------------------------------------------------------------------------------------------
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! create dataspace
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call h5screate_simple_f(1, int([dataspace_size(i)],HSIZE_T), space_id, hdferr, &
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int([dataspace_size(i)],HSIZE_T))
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeBackwardMapping')
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!--------------------------------------------------------------------------------------------------
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! compound type
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call h5tget_size_f(H5T_STD_I32LE, type_size, hdferr)
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call h5tcreate_f(H5T_COMPOUND_F, type_size, dtype_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeBackwardMapping: h5tcreate_f dtype_id')
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call h5tinsert_f(dtype_id, "Position", 0_SIZE_T, H5T_STD_I32LE, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingPhase: h5tinsert_f 0')
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|
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!--------------------------------------------------------------------------------------------------
|
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! create Dataset
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call h5dcreate_f(mapping_id, 'mapGeometry', dtype_id, space_id, dset_id, hdferr)
|
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingPhase')
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|
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!--------------------------------------------------------------------------------------------------
|
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! Create memory types (one compound datatype for each member)
|
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call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), position_id, hdferr)
|
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingPhase: h5tcreate_f position_id')
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call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_STD_I32LE, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingPhase: h5tinsert_f position_id')
|
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|
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!--------------------------------------------------------------------------------------------------
|
||
! Define and select hyperslabs
|
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counter = NmatPoints ! how big i am
|
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fileOffset = mpiOffset_phase(i) ! where i start to write my data
|
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|
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call h5screate_simple_f(1, counter, memspace, hdferr)
|
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingPhase: h5screate_simple_f')
|
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call h5dget_space_f(dset_id, space_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingPhase: h5dget_space_f')
|
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call h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, fileOffset, counter, hdferr)
|
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingPhase: h5sselect_hyperslab_f')
|
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|
||
!--------------------------------------------------------------------------------------------------
|
||
! Create property list for collective dataset write
|
||
#ifdef PETSc
|
||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingPhase: h5pcreate_f')
|
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call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingPhase: h5pset_dxpl_mpio_f')
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#endif
|
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|
||
!--------------------------------------------------------------------------------------------------
|
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! write data by fields in the datatype. Fields order is not important.
|
||
call h5dwrite_f(dset_id, position_id, pack(arr(1,:),arr(2,:)==i)+mpiOffset, int([dataspace_size(i)],HSIZE_T),&
|
||
hdferr, file_space_id = space_id, mem_space_id = memspace, xfer_prp = plist_id)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingPhase: h5dwrite_f instance_id')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
!close types, dataspaces
|
||
call h5tclose_f(dtype_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingPhase: h5tclose_f dtype_id')
|
||
call h5tclose_f(position_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingPhase: h5tclose_f position_id')
|
||
call h5dclose_f(dset_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingPhase: h5dclose_f')
|
||
call h5sclose_f(space_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingPhase: h5sclose_f space_id')
|
||
call h5sclose_f(memspace, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingPhase: h5sclose_f memspace')
|
||
call h5pclose_f(plist_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingPhase: h5pclose_f')
|
||
call HDF5_closeGroup(mapping_ID)
|
||
|
||
enddo
|
||
|
||
end subroutine HDF5_backwardMappingPhase
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
!> @brief adds the unique mapping from spatial position and constituent ID to results
|
||
!--------------------------------------------------------------------------------------------------
|
||
subroutine HDF5_mappingHomog(material_homog,homogmemberat,homogenization_name,dataspace_size,mpiOffset,mpiOffset_homog)
|
||
use hdf5
|
||
|
||
implicit none
|
||
integer(pInt), intent(in), dimension(:,:) :: material_homog, homogmemberat
|
||
character(len=*), intent(in), dimension(:) :: homogenization_name
|
||
integer(pInt), intent(in), dimension(:) :: mpiOffset_homog
|
||
integer(pInt), intent(in) :: dataspace_size, mpiOffset
|
||
|
||
integer(pInt) :: hdferr, NmatPoints, i, j
|
||
integer(HID_T) :: mapping_id, dtype_id, dset_id, space_id, name_id, position_id, plist_id, memspace
|
||
|
||
integer(HID_T) :: dt5_id ! Memory datatype identifier
|
||
integer(SIZE_T) :: typesize, type_sizec, type_sizei, type_size
|
||
|
||
integer(HSIZE_T), dimension(1) :: counter
|
||
integer(HSSIZE_T), dimension(1) :: fileOffset
|
||
integer(pInt), dimension(:), allocatable :: arrOffset
|
||
|
||
NmatPoints = count(material_homog /=0_pInt)
|
||
mapping_ID = results_openGroup("current/mapGeometry")
|
||
|
||
allocate(arrOffset(NmatPoints))
|
||
do i=1_pInt, NmatPoints
|
||
do j=1_pInt, size(homogenization_name)
|
||
if(material_homog(1,i) == j) &
|
||
arrOffset(i) = mpiOffset_homog(j)
|
||
enddo
|
||
enddo
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! create dataspace
|
||
call h5screate_simple_f(1, int([dataspace_size],HSIZE_T), space_id, hdferr, &
|
||
int([dataspace_size],HSIZE_T))
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeMapping')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! compound type
|
||
! First calculate total size by calculating sizes of each member
|
||
!
|
||
CALL h5tcopy_f(H5T_NATIVE_CHARACTER, dt5_id, hdferr)
|
||
typesize = len(homogenization_name(1))
|
||
CALL h5tset_size_f(dt5_id, typesize, hdferr)
|
||
CALL h5tget_size_f(dt5_id, type_sizec, hdferr)
|
||
CALL h5tget_size_f(H5T_STD_I32LE,type_sizei, hdferr)
|
||
type_size = type_sizec + type_sizei
|
||
call h5tcreate_f(H5T_COMPOUND_F, type_size, dtype_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeMapping: h5tcreate_f dtype_id')
|
||
|
||
call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt5_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5tinsert_f 0')
|
||
call h5tinsert_f(dtype_id, "Position", type_sizec, H5T_STD_I32LE, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5tinsert_f 2')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! create Dataset
|
||
call h5dcreate_f(mapping_id, 'homogenization', dtype_id, space_id, dset_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! Create memory types (one compound datatype for each member)
|
||
call h5tcreate_f(H5T_COMPOUND_F, int(type_sizec,SIZE_T), name_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5tcreate_f instance_id')
|
||
call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt5_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5tinsert_f instance_id')
|
||
|
||
call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), position_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5tcreate_f position_id')
|
||
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_STD_I32LE, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5tinsert_f position_id')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! Define and select hyperslabs
|
||
counter = NmatPoints ! how big i am
|
||
fileOffset = mpiOffset ! where i start to write my data
|
||
|
||
call h5screate_simple_f(1, counter, memspace, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5screate_simple_f')
|
||
call h5dget_space_f(dset_id, space_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5dget_space_f')
|
||
call h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, fileOffset, counter, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5sselect_hyperslab_f')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! Create property list for collective dataset write
|
||
#ifdef PETSc
|
||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5pcreate_f')
|
||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5pset_dxpl_mpio_f')
|
||
#endif
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! write data by fields in the datatype. Fields order is not important.
|
||
call h5dwrite_f(dset_id, name_id, homogenization_name(pack(material_homog,material_homog/=0_pInt)), &
|
||
int([dataspace_size],HSIZE_T), hdferr, file_space_id = space_id, &
|
||
mem_space_id = memspace, xfer_prp = plist_id)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5dwrite_f position_id')
|
||
|
||
call h5dwrite_f(dset_id, position_id, pack(homogmemberat-1_pInt,homogmemberat/=0_pInt) + arrOffset, &
|
||
int([dataspace_size],HSIZE_T), hdferr, file_space_id = space_id, &
|
||
mem_space_id = memspace, xfer_prp = plist_id)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5dwrite_f instance_id')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
!close types, dataspaces
|
||
call h5tclose_f(dtype_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5tclose_f dtype_id')
|
||
call h5tclose_f(position_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5tclose_f position_id')
|
||
call h5tclose_f(name_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5tclose_f name_id ')
|
||
call h5tclose_f(dt5_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5tclose_f dt5_id')
|
||
call h5dclose_f(dset_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5dclose_f')
|
||
call h5sclose_f(space_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5sclose_f space_id')
|
||
call h5sclose_f(memspace, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5sclose_f memspace')
|
||
call h5pclose_f(plist_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomog: h5pclose_f')
|
||
call HDF5_closeGroup(mapping_ID)
|
||
|
||
end subroutine HDF5_mappingHomog
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
!> @brief adds the backward mapping from spatial position and constituent ID to results
|
||
!--------------------------------------------------------------------------------------------------
|
||
subroutine HDF5_backwardMappingHomog(material_homog,homogmemberat,homogenization_name,dataspace_size,mpiOffset,mpiOffset_homog)
|
||
use hdf5
|
||
|
||
implicit none
|
||
integer(pInt), intent(in), dimension(:,:) :: material_homog, homogmemberat
|
||
character(len=*), intent(in), dimension(:) :: homogenization_name
|
||
integer(pInt), intent(in), dimension(:) :: dataspace_size, mpiOffset_homog
|
||
integer(pInt), intent(in) :: mpiOffset
|
||
|
||
integer(pInt) :: hdferr, NmatPoints, i
|
||
integer(HID_T) :: mapping_id, dtype_id, dset_id, space_id, position_id, plist_id, memspace
|
||
integer(SIZE_T) :: type_size
|
||
|
||
integer(pInt), dimension(:,:), allocatable :: arr
|
||
|
||
integer(HSIZE_T), dimension(1) :: counter
|
||
integer(HSSIZE_T), dimension(1) :: fileOffset
|
||
|
||
character(len=64) :: homogID
|
||
|
||
NmatPoints = count(material_homog /=0_pInt)
|
||
allocate(arr(2,NmatPoints))
|
||
|
||
arr(1,:) = (/(i, i=0_pint,NmatPoints-1_pInt)/)
|
||
arr(2,:) = pack(material_homog,material_homog/=0_pInt)
|
||
|
||
do i=1_pInt, size(homogenization_name)
|
||
write(homogID, '(i0)') i
|
||
mapping_ID = results_openGroup('/current/homogenization/'//trim(homogID)//'_'//homogenization_name(i))
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! create dataspace
|
||
call h5screate_simple_f(1, int([dataspace_size(i)],HSIZE_T), space_id, hdferr, &
|
||
int([dataspace_size(i)],HSIZE_T))
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeBackwardMapping')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! compound type
|
||
call h5tget_size_f(H5T_STD_I32LE, type_size, hdferr)
|
||
call h5tcreate_f(H5T_COMPOUND_F, type_size, dtype_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeBackwardMapping: h5tcreate_f dtype_id')
|
||
|
||
call h5tinsert_f(dtype_id, "Position", 0_SIZE_T, H5T_STD_I32LE, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingHomog: h5tinsert_f 0')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! create Dataset
|
||
call h5dcreate_f(mapping_id, 'mapGeometry', dtype_id, space_id, dset_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingHomog')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! Create memory types (one compound datatype for each member)
|
||
call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), position_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingHomog: h5tcreate_f position_id')
|
||
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_STD_I32LE, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingHomog: h5tinsert_f position_id')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! Define and select hyperslabs
|
||
counter = NmatPoints ! how big i am
|
||
fileOffset = mpiOffset_homog(i) ! where i start to write my data
|
||
|
||
call h5screate_simple_f(1, counter, memspace, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingHomog: h5screate_simple_f')
|
||
call h5dget_space_f(dset_id, space_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingHomog: h5dget_space_f')
|
||
call h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, fileOffset, counter, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingHomog: h5sselect_hyperslab_f')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! Create property list for collective dataset write
|
||
#ifdef PETSc
|
||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingHomog: h5pcreate_f')
|
||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingHomog: h5pset_dxpl_mpio_f')
|
||
#endif
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! write data by fields in the datatype. Fields order is not important.
|
||
call h5dwrite_f(dset_id, position_id, pack(arr(1,:),arr(2,:)==i)+mpiOffset,int([dataspace_size(i)],HSIZE_T),&
|
||
hdferr, file_space_id = space_id, mem_space_id = memspace, xfer_prp = plist_id)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingHomog: h5dwrite_f instance_id')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
!close types, dataspaces
|
||
call h5tclose_f(dtype_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingHomog: h5tclose_f dtype_id')
|
||
call h5tclose_f(position_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingHomog: h5tclose_f position_id')
|
||
call h5dclose_f(dset_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingHomog: h5dclose_f')
|
||
call h5sclose_f(space_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingHomog: h5sclose_f space_id')
|
||
call h5sclose_f(memspace, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingHomog: h5sclose_f memspace')
|
||
call h5pclose_f(plist_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingHomog: h5pclose_f')
|
||
call HDF5_closeGroup(mapping_ID)
|
||
|
||
enddo
|
||
|
||
end subroutine HDF5_backwardMappingHomog
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
!> @brief adds the unique mapping from spatial position and constituent ID to results
|
||
!--------------------------------------------------------------------------------------------------
|
||
subroutine HDF5_mappingCrystallite(crystalliteAt,crystmemberAt,crystallite_name,dataspace_size,mpiOffset,mpiOffset_cryst)
|
||
use hdf5
|
||
|
||
implicit none
|
||
integer(pInt), intent(in), dimension(:,:) :: crystalliteAt
|
||
integer(pInt), intent(in), dimension(:,:,:) :: crystmemberAt
|
||
character(len=*), intent(in), dimension(:) :: crystallite_name
|
||
integer(pInt), intent(in), dimension(:) :: mpiOffset_cryst
|
||
integer(pInt), intent(in) :: dataspace_size, mpiOffset
|
||
|
||
integer :: hdferr
|
||
integer(pInt) :: NmatPoints, Nconstituents, i, j
|
||
integer(HID_T) :: mapping_id, dtype_id, dset_id, space_id, name_id, plist_id, memspace
|
||
|
||
integer(HID_T), dimension(:), allocatable :: position_id
|
||
|
||
integer(HID_T) :: dt5_id ! Memory datatype identifier
|
||
integer(SIZE_T) :: typesize, type_sizec, type_sizei, type_size
|
||
|
||
integer(HSIZE_T), dimension(1) :: counter
|
||
integer(HSSIZE_T), dimension(1) :: fileOffset
|
||
integer(pInt), dimension(:), allocatable :: arrOffset
|
||
|
||
character(len=64) :: m
|
||
|
||
Nconstituents = size(crystmemberAt,1)
|
||
NmatPoints = count(crystalliteAt /=0_pInt)
|
||
mapping_ID = results_openGroup("current/mapGeometry")
|
||
|
||
allocate(position_id(Nconstituents))
|
||
|
||
allocate(arrOffset(NmatPoints))
|
||
do i=1_pInt, NmatPoints
|
||
do j=1_pInt, size(crystallite_name)
|
||
if(crystalliteAt(1,i) == j) &
|
||
arrOffset(i) = Nconstituents*mpiOffset_cryst(j)
|
||
enddo
|
||
enddo
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! create dataspace
|
||
call h5screate_simple_f(1, int([dataspace_size],HSIZE_T), space_id, hdferr, &
|
||
int([dataspace_size],HSIZE_T))
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeMapping')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! compound type
|
||
! First calculate total size by calculating sizes of each member
|
||
!
|
||
CALL h5tcopy_f(H5T_NATIVE_CHARACTER, dt5_id, hdferr)
|
||
typesize = len(crystallite_name(1))
|
||
CALL h5tset_size_f(dt5_id, typesize, hdferr)
|
||
CALL h5tget_size_f(dt5_id, type_sizec, hdferr)
|
||
CALL h5tget_size_f(H5T_STD_I32LE, type_sizei, hdferr)
|
||
type_size = type_sizec + type_sizei*Nconstituents
|
||
call h5tcreate_f(H5T_COMPOUND_F, type_size, dtype_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeMapping: h5tcreate_f dtype_id')
|
||
|
||
call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt5_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tinsert_f 0')
|
||
do i=1_pInt, Nconstituents
|
||
write(m, '(i0)') i
|
||
call h5tinsert_f(dtype_id, "Position "//trim(m), type_sizec+(i-1)*type_sizei, H5T_STD_I32LE, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tinsert_f 2 '//trim(m))
|
||
enddo
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! create Dataset
|
||
call h5dcreate_f(mapping_id, 'crystallite', dtype_id, space_id, dset_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! Create memory types (one compound datatype for each member)
|
||
call h5tcreate_f(H5T_COMPOUND_F, int(type_sizec,SIZE_T), name_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tcreate_f instance_id')
|
||
call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt5_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tinsert_f instance_id')
|
||
|
||
do i=1_pInt, Nconstituents
|
||
write(m, '(i0)') i
|
||
call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), position_id(i), hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tcreate_f position_id')
|
||
call h5tinsert_f(position_id(i), "Position "//trim(m), 0_SIZE_T, H5T_STD_I32LE, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tinsert_f position_id')
|
||
enddo
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! Define and select hyperslabs
|
||
counter = NmatPoints ! how big i am
|
||
fileOffset = mpiOffset ! where i start to write my data
|
||
|
||
call h5screate_simple_f(1, counter, memspace, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5screate_simple_f')
|
||
call h5dget_space_f(dset_id, space_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5dget_space_f')
|
||
call h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, fileOffset, counter, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5sselect_hyperslab_f')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! Create property list for collective dataset write
|
||
#ifdef PETSc
|
||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5pcreate_f')
|
||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5pset_dxpl_mpio_f')
|
||
#endif
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! write data by fields in the datatype. Fields order is not important.
|
||
call h5dwrite_f(dset_id, name_id, crystallite_name(pack(crystalliteAt,crystalliteAt/=0_pInt)), &
|
||
int([dataspace_size],HSIZE_T), hdferr, file_space_id = space_id, &
|
||
mem_space_id = memspace, xfer_prp = plist_id)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5dwrite_f position_id')
|
||
|
||
do i=1_pInt, Nconstituents
|
||
call h5dwrite_f(dset_id, position_id(i), pack(crystmemberAt(i,:,:)-1_pInt,crystmemberAt(i,:,:)/=0_pInt)+arrOffset,&
|
||
int([dataspace_size],HSIZE_T), hdferr, file_space_id = space_id, &
|
||
mem_space_id = memspace, xfer_prp = plist_id)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5dwrite_f instance_id')
|
||
enddo
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
!close types, dataspaces
|
||
call h5tclose_f(dtype_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tclose_f dtype_id')
|
||
do i=1_pInt, Nconstituents
|
||
call h5tclose_f(position_id(i), hdferr)
|
||
enddo
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tclose_f position_id')
|
||
call h5tclose_f(name_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tclose_f name_id')
|
||
call h5tclose_f(dt5_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tclose_f dt5_id')
|
||
call h5dclose_f(dset_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5dclose_f')
|
||
call h5sclose_f(space_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5sclose_f space_id')
|
||
call h5sclose_f(memspace, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5sclose_f memspace')
|
||
call h5pclose_f(plist_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5pclose_f')
|
||
call HDF5_closeGroup(mapping_ID)
|
||
|
||
end subroutine HDF5_mappingCrystallite
|
||
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
!> @brief adds the backward mapping from spatial position and constituent ID to results
|
||
!--------------------------------------------------------------------------------------------------
|
||
subroutine HDF5_backwardMappingCrystallite(crystalliteAt,crystmemberAt,crystallite_name,dataspace_size,mpiOffset,mpiOffset_cryst)
|
||
use hdf5
|
||
|
||
implicit none
|
||
integer(pInt), intent(in), dimension(:,:) :: crystalliteAt
|
||
integer(pInt), intent(in), dimension(:,:,:) :: crystmemberAt
|
||
character(len=*), intent(in), dimension(:) :: crystallite_name
|
||
integer(pInt), intent(in), dimension(:) :: dataspace_size, mpiOffset_cryst
|
||
integer(pInt), intent(in) :: mpiOffset
|
||
|
||
integer :: hdferr
|
||
integer(pInt) :: NmatPoints, Nconstituents, i, j
|
||
integer(HID_T) :: mapping_id, dtype_id, dset_id, space_id, position_id, plist_id, memspace
|
||
integer(SIZE_T) :: type_size
|
||
|
||
integer(pInt), dimension(:,:), allocatable :: h_arr, arr
|
||
|
||
integer(HSIZE_T), dimension(1) :: counter
|
||
integer(HSSIZE_T), dimension(1) :: fileOffset
|
||
|
||
character(len=64) :: crystallID
|
||
|
||
Nconstituents = size(crystmemberAt,1)
|
||
NmatPoints = count(crystalliteAt /=0_pInt)
|
||
|
||
allocate(h_arr(2,NmatPoints))
|
||
allocate(arr(2,Nconstituents*NmatPoints))
|
||
|
||
h_arr(1,:) = (/(i, i=0_pInt,NmatPoints-1_pInt)/)
|
||
h_arr(2,:) = pack(crystalliteAt,crystalliteAt/=0_pInt)
|
||
|
||
do i=1_pInt, NmatPoints
|
||
do j=Nconstituents-1_pInt, 0_pInt, -1_pInt
|
||
arr(1,Nconstituents*i-j) = h_arr(1,i)
|
||
arr(2,Nconstituents*i-j) = h_arr(2,i)
|
||
enddo
|
||
enddo
|
||
|
||
do i=1_pInt, size(crystallite_name)
|
||
if (crystallite_name(i) == 'none') cycle
|
||
write(crystallID, '(i0)') i
|
||
mapping_ID = results_openGroup('/current/crystallite/'//trim(crystallID)//'_'//crystallite_name(i))
|
||
NmatPoints = count(crystalliteAt == i)
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! create dataspace
|
||
call h5screate_simple_f(1, int([Nconstituents*dataspace_size(i)],HSIZE_T), space_id, hdferr, &
|
||
int([Nconstituents*dataspace_size(i)],HSIZE_T))
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeBackwardMapping')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! compound type
|
||
call h5tget_size_f(H5T_STD_I32LE, type_size, hdferr)
|
||
call h5tcreate_f(H5T_COMPOUND_F, type_size, dtype_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_writeBackwardMapping: h5tcreate_f dtype_id')
|
||
|
||
call h5tinsert_f(dtype_id, "Position", 0_SIZE_T, H5T_STD_I32LE, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingCrystallite: h5tinsert_f 0')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! create Dataset
|
||
call h5dcreate_f(mapping_id, 'mapGeometry', dtype_id, space_id, dset_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingCrystallite')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! Create memory types
|
||
call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), position_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingCrystallite: h5tcreate_f position_id')
|
||
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_STD_I32LE, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingCrystallite: h5tinsert_f position_id')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! Define and select hyperslabs
|
||
counter = Nconstituents*NmatPoints ! how big i am
|
||
fileOffset = Nconstituents*mpiOffset_cryst(i) ! where i start to write my data
|
||
|
||
call h5screate_simple_f(1, counter, memspace, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingCrystallite: h5screate_simple_f')
|
||
call h5dget_space_f(dset_id, space_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingCrystallite: h5dget_space_f')
|
||
call h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, fileOffset, counter, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingCrystallite: h5sselect_hyperslab_f')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! Create property list for collective dataset write
|
||
#ifdef PETSc
|
||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingCrystallite: h5pcreate_f')
|
||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingCrystallite: h5pset_dxpl_mpio_f')
|
||
#endif
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! write data by fields in the datatype. Fields order is not important.
|
||
call h5dwrite_f(dset_id, position_id, pack(arr(1,:),arr(2,:)==i) + mpiOffset,&
|
||
int([Nconstituents*dataspace_size(i)],HSIZE_T), hdferr, file_space_id = space_id, &
|
||
mem_space_id = memspace, xfer_prp = plist_id)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingCrystallite: h5dwrite_f instance_id')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
!close types, dataspaces
|
||
call h5tclose_f(dtype_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingCrystallite: h5tclose_f dtype_id')
|
||
call h5tclose_f(position_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingCrystallite: h5tclose_f position_id')
|
||
call h5dclose_f(dset_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingCrystallite: h5dclose_f')
|
||
call h5sclose_f(space_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingCrystallite: h5sclose_f space_id')
|
||
call h5sclose_f(memspace, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingCrystallite: h5sclose_f memspace')
|
||
call h5pclose_f(plist_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_backwardMappingCrystallite: h5pclose_f')
|
||
call HDF5_closeGroup(mapping_ID)
|
||
|
||
enddo
|
||
|
||
end subroutine HDF5_backwardMappingCrystallite
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
!> @brief adds the unique cell to node mapping
|
||
!--------------------------------------------------------------------------------------------------
|
||
subroutine HDF5_mappingCells(mapping)
|
||
use hdf5
|
||
|
||
implicit none
|
||
integer(pInt), intent(in), dimension(:) :: mapping
|
||
|
||
integer :: hdferr, Nnodes
|
||
integer(HID_T) :: mapping_id, dset_id, space_id
|
||
|
||
Nnodes=size(mapping)
|
||
mapping_ID = results_openGroup("mapping")
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! create dataspace
|
||
call h5screate_simple_f(1, int([Nnodes],HSIZE_T), space_id, hdferr, &
|
||
int([Nnodes],HSIZE_T))
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCells: h5screate_simple_f')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! create Dataset
|
||
call h5dcreate_f(mapping_id, "Cell",H5T_NATIVE_INTEGER, space_id, dset_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCells')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! write data by fields in the datatype. Fields order is not important.
|
||
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER, mapping, int([Nnodes],HSIZE_T), hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCells: h5dwrite_f instance_id')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
!close types, dataspaces
|
||
call h5dclose_f(dset_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5dclose_f')
|
||
call h5sclose_f(space_id, hdferr)
|
||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5sclose_f')
|
||
call HDF5_closeGroup(mapping_ID)
|
||
|
||
end subroutine HDF5_mappingCells
|
||
|
||
|
||
end module results
|