DAMASK_EICMD/processing/pre/geom_check.py

159 lines
5.8 KiB
Python
Executable File

#!/usr/bin/env python
# -*- coding: UTF-8 no BOM -*-
import os,sys,string,re,vtk
import numpy as np
from optparse import OptionParser
import damask
scriptID = string.replace('$Id$','\n','\\n')
scriptName = os.path.splitext(scriptID.split()[1])[0]
#--------------------------------------------------------------------------------------------------
# MAIN
#--------------------------------------------------------------------------------------------------
synonyms = {
'grid': ['resolution'],
'size': ['dimension'],
}
identifiers = {
'grid': ['a','b','c'],
'size': ['x','y','z'],
'origin': ['x','y','z'],
}
mappings = {
'grid': lambda x: int(x),
'size': lambda x: float(x),
'origin': lambda x: float(x),
'homogenization': lambda x: int(x),
'microstructures': lambda x: int(x),
}
parser = OptionParser(option_class=damask.extendableOption, usage='%prog [file[s]]', description = """
Produce VTK rectilinear mesh of structure data from geom description
""", version = scriptID)
parser.add_option('-n','--nodata', dest='data', action='store_false',
help='omit microstructure data, just generate mesh')
parser.set_defaults(data = True)
(options, filenames) = parser.parse_args()
#--- setup file handles --------------------------------------------------------------------------
files = []
if filenames == []:
files.append({'name':'STDIN',
'input':sys.stdin,
'output':sys.stdout,
'croak':sys.stderr,
})
else:
for name in filenames:
if os.path.exists(name):
files.append({'name':name,
'input':open(name),
'output':sys.stdout,
'croak':sys.stdout,
})
#--- loop over input files ------------------------------------------------------------------------
for file in files:
file['croak'].write('\033[1m' + scriptName + '\033[0m: ' + (file['name'] if file['name'] != 'STDIN' else '') + '\n')
theTable = damask.ASCIItable(file['input'],file['output'],labels=False)
theTable.head_read()
#--- interpret header ----------------------------------------------------------------------------
info = {
'grid': np.zeros(3,'i'),
'size': np.zeros(3,'d'),
'origin': np.zeros(3,'d'),
'homogenization': 0,
'microstructures': 0,
}
for header in theTable.info:
headitems = map(str.lower,header.split())
if len(headitems) == 0: continue
for synonym,alternatives in synonyms.iteritems():
if headitems[0] in alternatives: headitems[0] = synonym
if headitems[0] in mappings.keys():
if headitems[0] in identifiers.keys():
for i in xrange(len(identifiers[headitems[0]])):
info[headitems[0]][i] = \
mappings[headitems[0]](headitems[headitems.index(identifiers[headitems[0]][i])+1])
else:
info[headitems[0]] = mappings[headitems[0]](headitems[1])
file['croak'].write('grid a b c: %s\n'%(' x '.join(map(str,info['grid']))) + \
'size x y z: %s\n'%(' x '.join(map(str,info['size']))) + \
'origin x y z: %s\n'%(' : '.join(map(str,info['origin']))) + \
'homogenization: %i\n'%info['homogenization'] + \
'microstructures: %i\n'%info['microstructures'])
if np.any(info['grid'] < 1):
file['croak'].write('invalid grid a b c.\n')
continue
if np.any(info['size'] <= 0.0):
file['croak'].write('invalid size x y z.\n')
continue
#--- generate grid --------------------------------------------------------------------------------
grid = vtk.vtkRectilinearGrid()
grid.SetDimensions([x+1 for x in info['grid']])
for i in xrange(3):
temp = vtk.vtkDoubleArray()
temp.SetNumberOfTuples(info['grid'][i]+1)
for j in xrange(info['grid'][i]+1):
temp.InsertTuple1(j,j*info['size'][i]/info['grid'][i]+info['origin'][i])
if i == 0: grid.SetXCoordinates(temp)
elif i == 1: grid.SetYCoordinates(temp)
elif i == 2: grid.SetZCoordinates(temp)
#--- read microstructure information --------------------------------------------------------------
if options.data:
structure = vtk.vtkIntArray()
structure.SetName('Microstructures')
while theTable.data_read():
items = theTable.data
if len(items) > 2:
if items[1].lower() == 'of': items = [int(items[2])]*int(items[0])
elif items[1].lower() == 'to': items = xrange(int(items[0]),1+int(items[2]))
else: items = map(int,items)
else: items = map(int,items)
for item in items:
structure.InsertNextValue(item)
grid.GetCellData().AddArray(structure)
#--- write data -----------------------------------------------------------------------------------
if file['name'] == 'STDIN':
writer = vtk.vtkRectilinearGridWriter()
writer.WriteToOutputStringOn()
writer.SetFileTypeToASCII()
writer.SetHeader('# powered by '+scriptID)
if vtk.VTK_MAJOR_VERSION <= 5:
writer.SetInput(grid)
else:
writer.SetInputData(grid)
writer.Write()
file['output'].write(writer.GetOutputString()[0:writer.GetOutputStringLength()])
else:
(dir,file) = os.path.split(file['name'])
writer = vtk.vtkXMLRectilinearGridWriter()
writer.SetDataModeToBinary()
writer.SetCompressorTypeToZLib()
writer.SetFileName(os.path.join(dir,'mesh_'+os.path.splitext(file)[0]
+'.'+writer.GetDefaultFileExtension()))
if vtk.VTK_MAJOR_VERSION <= 5:
writer.SetInput(grid)
else:
writer.SetInputData(grid)
writer.Write()