218 lines
9.0 KiB
Python
Executable File
218 lines
9.0 KiB
Python
Executable File
#!/usr/bin/env python
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# Makes postprocessing routines acessible from everywhere.
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import os,sys,glob,string,subprocess
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from damask import Environment
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from optparse import OptionParser, Option
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# -----------------------------
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class extendableOption(Option):
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# -----------------------------
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# used for definition of new option parser action 'extend', which enables to take multiple option arguments
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# taken from online tutorial http://docs.python.org/library/optparse.html
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ACTIONS = Option.ACTIONS + ("extend",)
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STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",)
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TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",)
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ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",)
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def take_action(self, action, dest, opt, value, values, parser):
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if action == "extend":
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lvalue = value.split(",")
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values.ensure_value(dest, []).extend(lvalue)
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else:
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Option.take_action(self, action, dest, opt, value, values, parser)
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########################################################
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# MAIN
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########################################################
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parser = OptionParser(option_class=extendableOption, usage='%prog options', description = """
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Sets up the pre and post processing tools of DAMASK
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""" + string.replace('$Id$','\n','\\n')
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)
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compilers = ['intel','ifort','intel32','gfortran','gnu95']
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parser.add_option('--F90', '--f90', dest='compiler', type='string', \
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help='name of F90 compiler')
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parser.set_defaults(compiler = {True:'ifort',False:'gfortran'}[\
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subprocess.call(['which', 'ifort'],\
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stdout=subprocess.PIPE, stderr=subprocess.PIPE) == 0])
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(options,filenames) = parser.parse_args()
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if options.compiler not in compilers:
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parser.error('compiler switch "--F90" has to be one out of: %s'%(', '.join(compilers)))
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f2py_compiler = {
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'gfortran': 'gnu95 --f90flags="-fno-range-check -xf95-cpp-input -std=f2008 -fall-intrinsics -DSpectral -fdefault-real-8 -fdefault-double-8 -DFLOAT=8 -DINT=4 -I${DAMASK_ROOT}/lib"',
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'gnu95': 'gnu95 --f90flags="-fno-range-check -xf95-cpp-input -std=f2008 -fall-intrinsics -DSpectral -fdefault-real-8 -fdefault-double-8 -DFLOAT=8 -DINT=4 -I${DAMASK_ROOT}/lib"',
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'intel32': 'intel --f90flags="-fpp -stand f03 -diag-disable 5268 -assume byterecl -DSpectral -real-size 64 -integer-size 32 -DFLOAT=8 -DINT=4 -I${DAMASK_ROOT}/lib"',
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'intel': 'intelem --f90flags="-fpp -stand f03 -diag-disable 5268 -assume byterecl -DSpectral -real-size 64 -integer-size 32 -DFLOAT=8 -DINT=4 -I${DAMASK_ROOT}/lib"',
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'ifort': 'intelem --f90flags="-fpp -stand f03 -diag-disable 5268 -assume byterecl -DSpectral -real-size 64 -integer-size 32 -DFLOAT=8 -DINT=4 -I${DAMASK_ROOT}/lib"',
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}[options.compiler]
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compiler = {
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'gfortran': 'gfortran',
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'gnu95': 'gfortran',
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'intel32': 'ifort',
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'intel': 'ifort',
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'ifort': 'ifort',
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}[options.compiler]
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damaskEnv = Environment()
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baseDir = damaskEnv.relPath('processing/')
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codeDir = damaskEnv.relPath('code/')
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if 'ikml' in damaskEnv.pathInfo and damaskEnv.pathInfo['ikml'] != '':
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lib_lapack = '' # TODO!!
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elif 'acml' in damaskEnv.pathInfo and damaskEnv.pathInfo['acml'] != '':
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lib_lapack = '-L%s/%s64/lib -lacml'%(os.path.join(damaskEnv.pathInfo['acml']),compiler) # can we use linker flag?
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elif 'lapack' in damaskEnv.pathInfo and damaskEnv.pathInfo['lapack'] != '':
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lib_lapack = '-L%s -llapack'%(damaskEnv.pathInfo['lapack']) # see http://cens.ioc.ee/pipermail/f2py-users/2003-December/000621.html
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#define ToDo list
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bin_link = { \
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'pre' : [
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'marc_addUserOutput.py',
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'mentat_pbcOnBoxMesh.py',
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'mentat_spectralBox.py',
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'OIMang_hex2cub.py',
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'patchFromReconstructedBoundaries.py',
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'randomSeeding.py',
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'geom_fromAng.py',
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'geom_fromMinimalSurface.py',
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'geom_fromVoronoiTessellation.py',
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'geom_canvas.py',
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'geom_check.py',
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'geom_rescale.py',
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'geom_pack.py',
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'geom_unpack.py',
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'geom_translate.py',
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'geom_vicinityOffset.py',
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'geom_euclideanDistance'
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],
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'post' : [
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'3Dvisualize.py',
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'addCalculation.py',
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'addDeterminant.py',
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'addDeviator.py',
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'addSpectralDecomposition.py',
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'addDivergence.py',
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'addCurl.py',
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'addMises.py',
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'addNorm.py',
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'addCauchy.py',
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'addPK2.py',
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'addStrainTensors.py',
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'addEhkl.py',
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'addEuclideanDistance.py',
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'addCompatibilityMismatch.py',
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'addDeformedConfiguration.py',
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'averageDown.py',
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'binXY.py',
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'deleteColumn.py',
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'deleteInfo.py',
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'showTable.py',
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'filterTable.py',
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'mentat_colorMap.py',
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'postResults.py',
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'spectral_parseLog.py',
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'nodesFromCentroids.py',
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'tagLabel.py',
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'table2ang',
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],
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}
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compile = { \
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'pre' : [
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],
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'post' : [
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],
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}
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execute = { \
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'coreModule' : [
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'make tidy',
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# The following command is used to compile the fortran files and make the functions defined
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# in damask.core.pyf available for python in the module core.so
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# It uses the fortran wrapper f2py that is included in the numpy package to construct the
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# module core.so out of the fortran code in the f90 files
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# For the generation of the pyf file use the following lines:
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###########################################################################
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#'f2py -h damask.core.pyf' +\
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#' --overwrite-signature --no-lower prec.f90 DAMASK_spectral_interface.f90 math.f90 mesh.f90',
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###########################################################################
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'rm `readlink -f %s`' %(os.path.join(damaskEnv.relPath('lib/damask'),'core.so')),
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'f2py damask.core.pyf' +\
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' --build-dir ./' +\
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' -c --no-lower --fcompiler=%s'%(f2py_compiler) +\
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' %s'%'prec.f90'+\
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' %s'%'DAMASK_spectral_interface.f90'+\
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' %s'%'IO.f90'+\
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' %s'%'numerics.f90'+\
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' %s'%'debug.f90'+\
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' %s'%'math.f90'+\
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' %s'%'FEsolving.f90'+\
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' %s'%'mesh.f90'+\
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' %s'%'spectral_quit.f90'+\
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' -L%s/lib -lfftw3'%(damaskEnv.pathInfo['fftw'])+\
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' %s'%lib_lapack,
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'mv %s `readlink -f %s`' %(os.path.join(codeDir,'core.so'),os.path.join(damaskEnv.relPath('lib/damask'),'core.so')),
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]
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}
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for dir in compile: #there is nothing to compile at the moment
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for file in compile[dir]:
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src = os.path.abspath(os.path.join(baseDir,dir,file))
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if os.path.isfile(src):
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try:
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os.system('rm %s.exe'%(os.path.splitext(src)[0]))
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print 'removing %s.exe '%(os.path.splitext(src)[0])
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except:
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pass
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print 'compiling ',src,'using',compiler
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os.system('%s -O2 -o %s.exe %s'%(compiler,os.path.splitext(src)[0],src))
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os.chdir(codeDir) # needed for compilation with gfortran and f2py
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for tasks in execute:
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for cmd in execute[tasks]:
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try:
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print 'executing...:',cmd
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os.system(cmd)
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except:
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print 'failed..!'
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pass
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os.chdir(damaskEnv.relPath('processing/setup/'))
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modules = glob.glob('*.mod')
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for module in modules:
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print 'removing', module
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os.remove(module)
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for dir in bin_link:
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for file in bin_link[dir]:
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src = os.path.abspath(os.path.join(baseDir,dir,file))
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if (file == ''):
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sym_link = os.path.abspath(os.path.join(damaskEnv.binDir(),dir))
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else:
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sym_link = os.path.abspath(os.path.join(damaskEnv.binDir(),os.path.splitext(file)[0]))
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print sym_link,'-->',src
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if os.path.lexists(sym_link):
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os.remove(sym_link)
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os.symlink(src,sym_link)
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#check if compilation of core module was successful
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try:
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with open(damaskEnv.relPath('lib/damask/core.so')) as f: pass
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except IOError as e:
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print '*********\n* core.so not found, compilation of core modules was not successful\n*********'
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sys.exit()
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f.close
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