48 lines
1.3 KiB
Python
Executable File
48 lines
1.3 KiB
Python
Executable File
#!/usr/bin/env python3
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import os
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import sys
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from io import StringIO
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from optparse import OptionParser
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import numpy as np
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import damask
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scriptName = os.path.splitext(os.path.basename(__file__))[0]
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scriptID = ' '.join([scriptName,damask.version])
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#--------------------------------------------------------------------------------------------------
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# MAIN
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#--------------------------------------------------------------------------------------------------
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parser = OptionParser(option_class=damask.extendableOption, usage='%prog [geomfile(s)]', description = """
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Renumber sorted microstructure indices to 1,...,N.
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""", version=scriptID)
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(options, filenames) = parser.parse_args()
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if filenames == []: filenames = [None]
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for name in filenames:
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damask.util.report(scriptName,name)
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geom = damask.Geom.from_file(StringIO(''.join(sys.stdin.read())) if name is None else name)
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microstructure = geom.get_microstructure()
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renumbered = np.copy(microstructure)
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for i, oldID in enumerate(np.unique(microstructure)):
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renumbered = np.where(microstructure == oldID, i+1, renumbered)
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damask.util.croak(geom.update(renumbered))
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geom.add_comments(scriptID + ' ' + ' '.join(sys.argv[1:]))
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if name is None:
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sys.stdout.write(str(geom.show()))
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else:
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geom.to_file(name)
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