981 lines
45 KiB
Fortran
981 lines
45 KiB
Fortran
!--------------------------------------------------------------------------------------------------
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!> @author Vitesh Shah, Max-Planck-Institut für Eisenforschung GmbH
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!> @author Yi-Chin Yang, Max-Planck-Institut für Eisenforschung GmbH
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!> @author Jennifer Nastola, Max-Planck-Institut für Eisenforschung GmbH
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!> @author Martin Diehl, Max-Planck-Institut für Eisenforschung GmbH
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!--------------------------------------------------------------------------------------------------
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module results
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use DAMASK_interface
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use rotations
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use numerics
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use HDF5_utilities
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#ifdef PETSc
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use PETSC
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#endif
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implicit none
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private
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integer(HID_T) :: resultsFile
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interface results_writeDataset
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module procedure results_writeTensorDataset_real
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module procedure results_writeVectorDataset_real
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module procedure results_writeScalarDataset_real
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module procedure results_writeTensorDataset_int
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module procedure results_writeVectorDataset_int
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module procedure results_writeScalarDataset_rotation
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end interface results_writeDataset
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interface results_addAttribute
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module procedure results_addAttribute_real
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module procedure results_addAttribute_int
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module procedure results_addAttribute_str
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module procedure results_addAttribute_int_array
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module procedure results_addAttribute_real_array
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end interface results_addAttribute
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public :: &
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results_init, &
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results_openJobFile, &
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results_closeJobFile, &
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results_addIncrement, &
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results_addGroup, &
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results_openGroup, &
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results_closeGroup, &
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results_writeDataset, &
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results_setLink, &
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results_addAttribute, &
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results_removeLink, &
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results_mapping_constituent, &
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results_mapping_materialpoint
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contains
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subroutine results_init
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character(len=pStringLen) :: commandLine
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write(6,'(/,a)') ' <<<+- results init -+>>>'
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write(6,'(/,a)') ' Diehl et al., Integrating Materials and Manufacturing Innovation 6(1):83–91, 2017'
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write(6,'(a)') ' https://doi.org/10.1007/s40192-017-0084-5'
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resultsFile = HDF5_openFile(trim(getSolverJobName())//'.hdf5','w',.true.)
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call HDF5_addAttribute(resultsFile,'DADF5_version_major',0)
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call HDF5_addAttribute(resultsFile,'DADF5_version_minor',5)
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call HDF5_addAttribute(resultsFile,'DAMASK_version',DAMASKVERSION)
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call get_command(commandLine)
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call HDF5_addAttribute(resultsFile,'call',trim(commandLine))
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call HDF5_closeGroup(results_addGroup('mapping'))
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call HDF5_closeGroup(results_addGroup('mapping/cellResults'))
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call HDF5_closeFile(resultsFile)
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end subroutine results_init
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!--------------------------------------------------------------------------------------------------
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!> @brief opens the results file to append data
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!--------------------------------------------------------------------------------------------------
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subroutine results_openJobFile
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resultsFile = HDF5_openFile(trim(getSolverJobName())//'.hdf5','a',.true.)
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end subroutine results_openJobFile
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!--------------------------------------------------------------------------------------------------
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!> @brief closes the results file
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!--------------------------------------------------------------------------------------------------
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subroutine results_closeJobFile
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call HDF5_closeFile(resultsFile)
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end subroutine results_closeJobFile
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!--------------------------------------------------------------------------------------------------
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!> @brief creates the group of increment and adds time as attribute to the file
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!--------------------------------------------------------------------------------------------------
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subroutine results_addIncrement(inc,time)
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integer, intent(in) :: inc
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real(pReal), intent(in) :: time
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character(len=pStringLen) :: incChar
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write(incChar,'(i10)') inc
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call HDF5_closeGroup(results_addGroup(trim('inc'//trim(adjustl(incChar)))))
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call results_setLink(trim('inc'//trim(adjustl(incChar))),'current')
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call HDF5_addAttribute(resultsFile,'time/s',time,trim('inc'//trim(adjustl(incChar))))
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call HDF5_closeGroup(results_addGroup('current/constituent'))
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call HDF5_closeGroup(results_addGroup('current/materialpoint'))
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end subroutine results_addIncrement
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!--------------------------------------------------------------------------------------------------
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!> @brief open a group from the results file
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!--------------------------------------------------------------------------------------------------
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integer(HID_T) function results_openGroup(groupName)
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character(len=*), intent(in) :: groupName
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results_openGroup = HDF5_openGroup(resultsFile,groupName)
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end function results_openGroup
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!--------------------------------------------------------------------------------------------------
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!> @brief adds a new group to the results file
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!--------------------------------------------------------------------------------------------------
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integer(HID_T) function results_addGroup(groupName)
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character(len=*), intent(in) :: groupName
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results_addGroup = HDF5_addGroup(resultsFile,groupName)
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end function results_addGroup
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!--------------------------------------------------------------------------------------------------
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!> @brief close a group
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!--------------------------------------------------------------------------------------------------
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subroutine results_closeGroup(group_id)
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integer(HID_T), intent(in) :: group_id
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call HDF5_closeGroup(group_id)
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end subroutine results_closeGroup
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!--------------------------------------------------------------------------------------------------
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!> @brief set link to object in results file
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!--------------------------------------------------------------------------------------------------
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subroutine results_setLink(path,link)
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character(len=*), intent(in) :: path, link
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call HDF5_setLink(resultsFile,path,link)
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end subroutine results_setLink
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!--------------------------------------------------------------------------------------------------
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!> @brief adds a string attribute to an object in the results file
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!--------------------------------------------------------------------------------------------------
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subroutine results_addAttribute_str(attrLabel,attrValue,path)
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character(len=*), intent(in) :: attrLabel, attrValue, path
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call HDF5_addAttribute(resultsFile,attrLabel, attrValue, path)
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end subroutine results_addAttribute_str
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!--------------------------------------------------------------------------------------------------
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!> @brief adds an integer attribute an object in the results file
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!--------------------------------------------------------------------------------------------------
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subroutine results_addAttribute_int(attrLabel,attrValue,path)
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character(len=*), intent(in) :: attrLabel, path
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integer, intent(in) :: attrValue
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call HDF5_addAttribute(resultsFile,attrLabel, attrValue, path)
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end subroutine results_addAttribute_int
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!--------------------------------------------------------------------------------------------------
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!> @brief adds a real attribute an object in the results file
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!--------------------------------------------------------------------------------------------------
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subroutine results_addAttribute_real(attrLabel,attrValue,path)
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character(len=*), intent(in) :: attrLabel, path
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real(pReal), intent(in) :: attrValue
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call HDF5_addAttribute(resultsFile,attrLabel, attrValue, path)
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end subroutine results_addAttribute_real
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!--------------------------------------------------------------------------------------------------
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!> @brief adds an integer array attribute an object in the results file
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!--------------------------------------------------------------------------------------------------
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subroutine results_addAttribute_int_array(attrLabel,attrValue,path)
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character(len=*), intent(in) :: attrLabel, path
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integer, intent(in), dimension(:) :: attrValue
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call HDF5_addAttribute(resultsFile,attrLabel, attrValue, path)
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end subroutine results_addAttribute_int_array
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!--------------------------------------------------------------------------------------------------
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!> @brief adds a real array attribute an object in the results file
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!--------------------------------------------------------------------------------------------------
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subroutine results_addAttribute_real_array(attrLabel,attrValue,path)
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character(len=*), intent(in) :: attrLabel, path
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real(pReal), intent(in), dimension(:) :: attrValue
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call HDF5_addAttribute(resultsFile,attrLabel, attrValue, path)
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end subroutine results_addAttribute_real_array
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!--------------------------------------------------------------------------------------------------
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!> @brief remove link to an object
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!--------------------------------------------------------------------------------------------------
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subroutine results_removeLink(link)
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character(len=*), intent(in) :: link
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integer :: hdferr
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call h5ldelete_f(resultsFile,link, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg = 'results_removeLink: h5ldelete_soft_f ('//trim(link)//')')
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end subroutine results_removeLink
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!--------------------------------------------------------------------------------------------------
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!> @brief stores a scalar dataset in a group
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!--------------------------------------------------------------------------------------------------
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subroutine results_writeScalarDataset_real(group,dataset,label,description,SIunit)
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character(len=*), intent(in) :: label,group,description
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character(len=*), intent(in), optional :: SIunit
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real(pReal), intent(inout), dimension(:) :: dataset
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integer(HID_T) :: groupHandle
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groupHandle = results_openGroup(group)
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#ifdef PETSc
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call HDF5_write(groupHandle,dataset,label,.true.)
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#else
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call HDF5_write(groupHandle,dataset,label,.false.)
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#endif
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if (HDF5_objectExists(groupHandle,label)) &
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call HDF5_addAttribute(groupHandle,'Description',description,label)
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if (HDF5_objectExists(groupHandle,label) .and. present(SIunit)) &
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call HDF5_addAttribute(groupHandle,'Unit',SIunit,label)
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if (HDF5_objectExists(groupHandle,label)) &
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call HDF5_addAttribute(groupHandle,'Creator','DAMASK '//DAMASKVERSION,label)
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call HDF5_closeGroup(groupHandle)
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end subroutine results_writeScalarDataset_real
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!--------------------------------------------------------------------------------------------------
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!> @brief stores a vector dataset in a group
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!--------------------------------------------------------------------------------------------------
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subroutine results_writeVectorDataset_real(group,dataset,label,description,SIunit)
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character(len=*), intent(in) :: label,group,description
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character(len=*), intent(in), optional :: SIunit
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real(pReal), intent(inout), dimension(:,:) :: dataset
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integer(HID_T) :: groupHandle
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groupHandle = results_openGroup(group)
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#ifdef PETSc
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call HDF5_write(groupHandle,dataset,label,.true.)
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#else
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call HDF5_write(groupHandle,dataset,label,.false.)
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#endif
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if (HDF5_objectExists(groupHandle,label)) &
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call HDF5_addAttribute(groupHandle,'Description',description,label)
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if (HDF5_objectExists(groupHandle,label) .and. present(SIunit)) &
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call HDF5_addAttribute(groupHandle,'Unit',SIunit,label)
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if (HDF5_objectExists(groupHandle,label)) &
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call HDF5_addAttribute(groupHandle,'Creator','DAMASK '//DAMASKVERSION,label)
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call HDF5_closeGroup(groupHandle)
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end subroutine results_writeVectorDataset_real
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!--------------------------------------------------------------------------------------------------
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!> @brief stores a tensor dataset in a group
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!--------------------------------------------------------------------------------------------------
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subroutine results_writeTensorDataset_real(group,dataset,label,description,SIunit,transposed)
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character(len=*), intent(in) :: label,group,description
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character(len=*), intent(in), optional :: SIunit
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logical, intent(in), optional :: transposed
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real(pReal), intent(in), dimension(:,:,:) :: dataset
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integer :: i
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logical :: transposed_
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integer(HID_T) :: groupHandle
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real(pReal), dimension(:,:,:), allocatable :: dataset_transposed
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if(present(transposed)) then
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transposed_ = transposed
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else
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transposed_ = .true.
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endif
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if(transposed_) then
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if(size(dataset,1) /= size(dataset,2)) call IO_error(0,ext_msg='transpose non-symmetric tensor')
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allocate(dataset_transposed,mold=dataset)
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do i=1,size(dataset_transposed,3)
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dataset_transposed(:,:,i) = transpose(dataset(:,:,i))
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enddo
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else
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allocate(dataset_transposed,source=dataset)
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endif
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groupHandle = results_openGroup(group)
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#ifdef PETSc
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call HDF5_write(groupHandle,dataset_transposed,label,.true.)
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#else
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call HDF5_write(groupHandle,dataset_transposed,label,.false.)
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#endif
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if (HDF5_objectExists(groupHandle,label)) &
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call HDF5_addAttribute(groupHandle,'Description',description,label)
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if (HDF5_objectExists(groupHandle,label) .and. present(SIunit)) &
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call HDF5_addAttribute(groupHandle,'Unit',SIunit,label)
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if (HDF5_objectExists(groupHandle,label)) &
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call HDF5_addAttribute(groupHandle,'Creator','DAMASK '//DAMASKVERSION,label)
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call HDF5_closeGroup(groupHandle)
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end subroutine results_writeTensorDataset_real
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!--------------------------------------------------------------------------------------------------
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!> @brief stores a vector dataset in a group
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!--------------------------------------------------------------------------------------------------
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subroutine results_writeVectorDataset_int(group,dataset,label,description,SIunit)
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character(len=*), intent(in) :: label,group,description
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character(len=*), intent(in), optional :: SIunit
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integer, intent(inout), dimension(:,:) :: dataset
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integer(HID_T) :: groupHandle
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groupHandle = results_openGroup(group)
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#ifdef PETSc
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call HDF5_write(groupHandle,dataset,label,.true.)
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#else
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call HDF5_write(groupHandle,dataset,label,.false.)
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#endif
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if (HDF5_objectExists(groupHandle,label)) &
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call HDF5_addAttribute(groupHandle,'Description',description,label)
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if (HDF5_objectExists(groupHandle,label) .and. present(SIunit)) &
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call HDF5_addAttribute(groupHandle,'Unit',SIunit,label)
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if (HDF5_objectExists(groupHandle,label)) &
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call HDF5_addAttribute(groupHandle,'Creator','DAMASK '//DAMASKVERSION,label)
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call HDF5_closeGroup(groupHandle)
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end subroutine results_writeVectorDataset_int
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!--------------------------------------------------------------------------------------------------
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!> @brief stores a tensor dataset in a group
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!--------------------------------------------------------------------------------------------------
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subroutine results_writeTensorDataset_int(group,dataset,label,description,SIunit)
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character(len=*), intent(in) :: label,group,description
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character(len=*), intent(in), optional :: SIunit
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integer, intent(inout), dimension(:,:,:) :: dataset
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integer(HID_T) :: groupHandle
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groupHandle = results_openGroup(group)
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#ifdef PETSc
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call HDF5_write(groupHandle,dataset,label,.true.)
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#else
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call HDF5_write(groupHandle,dataset,label,.false.)
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#endif
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if (HDF5_objectExists(groupHandle,label)) &
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call HDF5_addAttribute(groupHandle,'Description',description,label)
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if (HDF5_objectExists(groupHandle,label) .and. present(SIunit)) &
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call HDF5_addAttribute(groupHandle,'Unit',SIunit,label)
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if (HDF5_objectExists(groupHandle,label)) &
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call HDF5_addAttribute(groupHandle,'Creator','DAMASK '//DAMASKVERSION,label)
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call HDF5_closeGroup(groupHandle)
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end subroutine results_writeTensorDataset_int
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!--------------------------------------------------------------------------------------------------
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!> @brief stores a scalar dataset in a group
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!--------------------------------------------------------------------------------------------------
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subroutine results_writeScalarDataset_rotation(group,dataset,label,description,lattice_structure)
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character(len=*), intent(in) :: label,group,description
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character(len=*), intent(in), optional :: lattice_structure
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type(rotation), intent(inout), dimension(:) :: dataset
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integer(HID_T) :: groupHandle
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groupHandle = results_openGroup(group)
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#ifdef PETSc
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call HDF5_write(groupHandle,dataset,label,.true.)
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#else
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call HDF5_write(groupHandle,dataset,label,.false.)
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#endif
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if (HDF5_objectExists(groupHandle,label)) &
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call HDF5_addAttribute(groupHandle,'Description',description,label)
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if (HDF5_objectExists(groupHandle,label) .and. present(lattice_structure)) &
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call HDF5_addAttribute(groupHandle,'Lattice',lattice_structure,label)
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if (HDF5_objectExists(groupHandle,label)) &
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call HDF5_addAttribute(groupHandle,'Creator','DAMASK '//DAMASKVERSION,label)
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call HDF5_closeGroup(groupHandle)
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end subroutine results_writeScalarDataset_rotation
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!--------------------------------------------------------------------------------------------------
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!> @brief adds the unique mapping from spatial position and constituent ID to results
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!--------------------------------------------------------------------------------------------------
|
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subroutine results_mapping_constituent(phaseAt,memberAt,label)
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integer, dimension(:,:), intent(in) :: phaseAt !< phase section at (constituent,element)
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integer, dimension(:,:,:), intent(in) :: memberAt !< phase member at (constituent,IP,element)
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character(len=pStringLen), dimension(:), intent(in) :: label !< label of each phase section
|
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|
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integer, dimension(size(memberAt,1),size(memberAt,2),size(memberAt,3)) :: &
|
||
phaseAt_perIP, &
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memberAt_total
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integer, dimension(size(label),0:worldsize-1) :: memberOffset !< offset in member counting per process
|
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integer, dimension(0:worldsize-1) :: writeSize !< amount of data written per process
|
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integer(HSIZE_T), dimension(2) :: &
|
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myShape, & !< shape of the dataset (this process)
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myOffset, &
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totalShape !< shape of the dataset (all processes)
|
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|
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integer(HID_T) :: &
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loc_id, & !< identifier of group in file
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dtype_id, & !< identifier of compound data type
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name_id, & !< identifier of name (string) in compound data type
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position_id, & !< identifier of position/index (integer) in compound data type
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dset_id, &
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memspace_id, &
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filespace_id, &
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plist_id, &
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dt_id
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|
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|
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integer(SIZE_T) :: type_size_string, type_size_int
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integer :: ierr, i
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|
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!---------------------------------------------------------------------------------------------------
|
||
! compound type: name of phase section + position/index within results array
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call h5tcopy_f(H5T_NATIVE_CHARACTER, dt_id, ierr)
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call h5tset_size_f(dt_id, int(len(label(1)),SIZE_T), ierr)
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call h5tget_size_f(dt_id, type_size_string, ierr)
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|
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call h5tget_size_f(H5T_NATIVE_INTEGER, type_size_int, ierr)
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|
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call h5tcreate_f(H5T_COMPOUND_F, type_size_string + type_size_int, dtype_id, ierr)
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call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt_id,ierr)
|
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call h5tinsert_f(dtype_id, "Position", type_size_string, H5T_NATIVE_INTEGER, ierr)
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
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! create memory types for each component of the compound type
|
||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string, name_id, ierr)
|
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call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt_id, ierr)
|
||
|
||
call h5tcreate_f(H5T_COMPOUND_F, type_size_int, position_id, ierr)
|
||
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_NATIVE_INTEGER, ierr)
|
||
|
||
call h5tclose_f(dt_id, ierr)
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! prepare MPI communication (transparent for non-MPI runs)
|
||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
|
||
memberOffset = 0
|
||
do i=1, size(label)
|
||
memberOffset(i,worldrank) = count(phaseAt == i)*size(memberAt,2) ! number of points/instance of this process
|
||
enddo
|
||
writeSize = 0
|
||
writeSize(worldrank) = size(memberAt(1,:,:)) ! total number of points by this process
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! MPI settings and communication
|
||
#ifdef PETSc
|
||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, ierr)
|
||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5pset_dxpl_mpio_f')
|
||
|
||
call MPI_allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get output at each process
|
||
if (ierr /= 0) call IO_error(894,ext_msg='results_mapping_constituent: MPI_allreduce/writeSize')
|
||
|
||
call MPI_allreduce(MPI_IN_PLACE,memberOffset,size(memberOffset),MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr)! get offset at each process
|
||
if (ierr /= 0) call IO_error(894,ext_msg='results_mapping_constituent: MPI_allreduce/memberOffset')
|
||
#endif
|
||
|
||
myShape = int([size(phaseAt,1),writeSize(worldrank)], HSIZE_T)
|
||
myOffset = int([0,sum(writeSize(0:worldrank-1))], HSIZE_T)
|
||
totalShape = int([size(phaseAt,1),sum(writeSize)], HSIZE_T)
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! create dataspace in memory (local shape = hyperslab) and in file (global shape)
|
||
call h5screate_simple_f(2,myShape,memspace_id,ierr,myShape)
|
||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5screate_simple_f/memspace_id')
|
||
|
||
call h5screate_simple_f(2,totalShape,filespace_id,ierr,totalShape)
|
||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5screate_simple_f/filespace_id')
|
||
|
||
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myOffset, myShape, ierr)
|
||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5sselect_hyperslab_f')
|
||
|
||
!---------------------------------------------------------------------------------------------------
|
||
! expand phaseAt to consider IPs (is not stored per IP)
|
||
do i = 1, size(phaseAt_perIP,2)
|
||
phaseAt_perIP(:,i,:) = phaseAt
|
||
enddo
|
||
|
||
!---------------------------------------------------------------------------------------------------
|
||
! renumber member from my process to all processes
|
||
do i = 1, size(label)
|
||
where(phaseAt_perIP == i) memberAt_total = memberAt + sum(memberOffset(i,0:worldrank-1)) -1 ! convert to 0-based
|
||
enddo
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! write the components of the compound type individually
|
||
call h5pset_preserve_f(plist_id, .TRUE., ierr)
|
||
|
||
loc_id = results_openGroup('/mapping/cellResults')
|
||
call h5dcreate_f(loc_id, 'constituent', dtype_id, filespace_id, dset_id, ierr)
|
||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5dcreate_f')
|
||
|
||
call h5dwrite_f(dset_id, name_id, reshape(label(pack(phaseAt_perIP,.true.)),myShape), &
|
||
myShape, ierr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5dwrite_f/name_id')
|
||
call h5dwrite_f(dset_id, position_id, reshape(pack(memberAt_total,.true.),myShape), &
|
||
myShape, ierr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5dwrite_f/position_id')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! close all
|
||
call HDF5_closeGroup(loc_id)
|
||
call h5pclose_f(plist_id, ierr)
|
||
call h5sclose_f(filespace_id, ierr)
|
||
call h5sclose_f(memspace_id, ierr)
|
||
call h5dclose_f(dset_id, ierr)
|
||
call h5tclose_f(dtype_id, ierr)
|
||
call h5tclose_f(name_id, ierr)
|
||
call h5tclose_f(position_id, ierr)
|
||
|
||
end subroutine results_mapping_constituent
|
||
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
!> @brief adds the unique mapping from spatial position and constituent ID to results
|
||
!--------------------------------------------------------------------------------------------------
|
||
subroutine results_mapping_materialpoint(homogenizationAt,memberAt,label)
|
||
|
||
integer, dimension(:), intent(in) :: homogenizationAt !< homogenization section at (element)
|
||
integer, dimension(:,:), intent(in) :: memberAt !< homogenization member at (IP,element)
|
||
character(len=pStringLen), dimension(:), intent(in) :: label !< label of each homogenization section
|
||
|
||
integer, dimension(size(memberAt,1),size(memberAt,2)) :: &
|
||
homogenizationAt_perIP, &
|
||
memberAt_total
|
||
integer, dimension(size(label),0:worldsize-1) :: memberOffset !< offset in member counting per process
|
||
integer, dimension(0:worldsize-1) :: writeSize !< amount of data written per process
|
||
integer(HSIZE_T), dimension(1) :: &
|
||
myShape, & !< shape of the dataset (this process)
|
||
myOffset, &
|
||
totalShape !< shape of the dataset (all processes)
|
||
|
||
integer(HID_T) :: &
|
||
loc_id, & !< identifier of group in file
|
||
dtype_id, & !< identifier of compound data type
|
||
name_id, & !< identifier of name (string) in compound data type
|
||
position_id, & !< identifier of position/index (integer) in compound data type
|
||
dset_id, &
|
||
memspace_id, &
|
||
filespace_id, &
|
||
plist_id, &
|
||
dt_id
|
||
|
||
|
||
integer(SIZE_T) :: type_size_string, type_size_int
|
||
integer :: ierr, i
|
||
|
||
!---------------------------------------------------------------------------------------------------
|
||
! compound type: name of phase section + position/index within results array
|
||
call h5tcopy_f(H5T_NATIVE_CHARACTER, dt_id, ierr)
|
||
call h5tset_size_f(dt_id, int(len(label(1)),SIZE_T), ierr)
|
||
call h5tget_size_f(dt_id, type_size_string, ierr)
|
||
|
||
call h5tget_size_f(H5T_NATIVE_INTEGER, type_size_int, ierr)
|
||
|
||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string + type_size_int, dtype_id, ierr)
|
||
call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt_id,ierr)
|
||
call h5tinsert_f(dtype_id, "Position", type_size_string, H5T_NATIVE_INTEGER, ierr)
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! create memory types for each component of the compound type
|
||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string, name_id, ierr)
|
||
call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt_id, ierr)
|
||
|
||
call h5tcreate_f(H5T_COMPOUND_F, type_size_int, position_id, ierr)
|
||
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_NATIVE_INTEGER, ierr)
|
||
|
||
call h5tclose_f(dt_id, ierr)
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! prepare MPI communication (transparent for non-MPI runs)
|
||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
|
||
memberOffset = 0
|
||
do i=1, size(label)
|
||
memberOffset(i,worldrank) = count(homogenizationAt == i)*size(memberAt,1) ! number of points/instance of this process
|
||
enddo
|
||
writeSize = 0
|
||
writeSize(worldrank) = size(memberAt) ! total number of points by this process
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! MPI settings and communication
|
||
#ifdef PETSc
|
||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, ierr)
|
||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_materialpoint: h5pset_dxpl_mpio_f')
|
||
|
||
call MPI_allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get output at each process
|
||
if (ierr /= 0) call IO_error(894,ext_msg='results_mapping_materialpoint: MPI_allreduce/writeSize')
|
||
|
||
call MPI_allreduce(MPI_IN_PLACE,memberOffset,size(memberOffset),MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr)! get offset at each process
|
||
if (ierr /= 0) call IO_error(894,ext_msg='results_mapping_materialpoint: MPI_allreduce/memberOffset')
|
||
#endif
|
||
|
||
myShape = int([writeSize(worldrank)], HSIZE_T)
|
||
myOffset = int([sum(writeSize(0:worldrank-1))], HSIZE_T)
|
||
totalShape = int([sum(writeSize)], HSIZE_T)
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! create dataspace in memory (local shape = hyperslab) and in file (global shape)
|
||
call h5screate_simple_f(1,myShape,memspace_id,ierr,myShape)
|
||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_materialpoint: h5screate_simple_f/memspace_id')
|
||
|
||
call h5screate_simple_f(1,totalShape,filespace_id,ierr,totalShape)
|
||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_materialpoint: h5screate_simple_f/filespace_id')
|
||
|
||
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myOffset, myShape, ierr)
|
||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_materialpoint: h5sselect_hyperslab_f')
|
||
|
||
!---------------------------------------------------------------------------------------------------
|
||
! expand phaseAt to consider IPs (is not stored per IP)
|
||
do i = 1, size(homogenizationAt_perIP,1)
|
||
homogenizationAt_perIP(i,:) = homogenizationAt
|
||
enddo
|
||
|
||
!---------------------------------------------------------------------------------------------------
|
||
! renumber member from my process to all processes
|
||
do i = 1, size(label)
|
||
where(homogenizationAt_perIP == i) memberAt_total = memberAt + sum(memberOffset(i,0:worldrank-1)) - 1 ! convert to 0-based
|
||
enddo
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! write the components of the compound type individually
|
||
call h5pset_preserve_f(plist_id, .TRUE., ierr)
|
||
|
||
loc_id = results_openGroup('/mapping/cellResults')
|
||
call h5dcreate_f(loc_id, 'materialpoint', dtype_id, filespace_id, dset_id, ierr)
|
||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_materialpoint: h5dcreate_f')
|
||
|
||
call h5dwrite_f(dset_id, name_id, reshape(label(pack(homogenizationAt_perIP,.true.)),myShape), &
|
||
myShape, ierr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_materialpoint: h5dwrite_f/name_id')
|
||
call h5dwrite_f(dset_id, position_id, reshape(pack(memberAt_total,.true.),myShape), &
|
||
myShape, ierr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_materialpoint: h5dwrite_f/position_id')
|
||
|
||
!--------------------------------------------------------------------------------------------------
|
||
! close all
|
||
call HDF5_closeGroup(loc_id)
|
||
call h5pclose_f(plist_id, ierr)
|
||
call h5sclose_f(filespace_id, ierr)
|
||
call h5sclose_f(memspace_id, ierr)
|
||
call h5dclose_f(dset_id, ierr)
|
||
call h5tclose_f(dtype_id, ierr)
|
||
call h5tclose_f(name_id, ierr)
|
||
call h5tclose_f(position_id, ierr)
|
||
|
||
end subroutine results_mapping_materialpoint
|
||
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
!!> @brief adds the backward mapping from spatial position and constituent ID to results
|
||
!!--------------------------------------------------------------------------------------------------
|
||
!subroutine HDF5_backwardMappingPhase(material_phase,phasememberat,phase_name,dataspace_size,mpiOffset,mpiOffset_phase)
|
||
! use hdf5
|
||
|
||
! integer(pInt), intent(in), dimension(:,:,:) :: material_phase, phasememberat
|
||
! character(len=*), intent(in), dimension(:) :: phase_name
|
||
! integer(pInt), intent(in), dimension(:) :: dataspace_size, mpiOffset_phase
|
||
! integer(pInt), intent(in) :: mpiOffset
|
||
|
||
! integer(pInt) :: hdferr, NmatPoints, Nconstituents, i, j
|
||
! integer(HID_T) :: mapping_id, dtype_id, dset_id, space_id, position_id, plist_id, memspace
|
||
! integer(SIZE_T) :: type_size
|
||
|
||
! integer(pInt), dimension(:,:), allocatable :: arr
|
||
|
||
! integer(HSIZE_T), dimension(1) :: counter
|
||
! integer(HSSIZE_T), dimension(1) :: fileOffset
|
||
|
||
! character(len=64) :: phaseID
|
||
|
||
! Nconstituents = size(phasememberat,1)
|
||
! NmatPoints = count(material_phase /=0)/Nconstituents
|
||
|
||
! allocate(arr(2,NmatPoints*Nconstituents))
|
||
|
||
! do i=1, NmatPoints
|
||
! do j=Nconstituents-1, 0, -1
|
||
! arr(1,Nconstituents*i-j) = i-1
|
||
! enddo
|
||
! enddo
|
||
! arr(2,:) = pack(material_phase,material_phase/=0)
|
||
|
||
! do i=1, size(phase_name)
|
||
! write(phaseID, '(i0)') i
|
||
! mapping_ID = results_openGroup('/current/constitutive/'//trim(phaseID)//'_'//phase_name(i))
|
||
! NmatPoints = count(material_phase == i)
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
! ! create dataspace
|
||
! call h5screate_simple_f(1, int([dataspace_size(i)],HSIZE_T), space_id, hdferr, &
|
||
! int([dataspace_size(i)],HSIZE_T))
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='HDF5_writeBackwardMapping')
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
! ! compound type
|
||
! call h5tget_size_f(H5T_STD_I32LE, type_size, hdferr)
|
||
! call h5tcreate_f(H5T_COMPOUND_F, type_size, dtype_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='HDF5_writeBackwardMapping: h5tcreate_f dtype_id')
|
||
|
||
! call h5tinsert_f(dtype_id, "Position", 0_SIZE_T, H5T_STD_I32LE, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5tinsert_f 0')
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
! ! create Dataset
|
||
! call h5dcreate_f(mapping_id, 'mapGeometry', dtype_id, space_id, dset_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase')
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
! ! Create memory types (one compound datatype for each member)
|
||
! call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), position_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5tcreate_f position_id')
|
||
! call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_STD_I32LE, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5tinsert_f position_id')
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
! ! Define and select hyperslabs
|
||
! counter = NmatPoints ! how big i am
|
||
! fileOffset = mpiOffset_phase(i) ! where i start to write my data
|
||
|
||
! call h5screate_simple_f(1, counter, memspace, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5screate_simple_f')
|
||
! call h5dget_space_f(dset_id, space_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5dget_space_f')
|
||
! call h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, fileOffset, counter, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5sselect_hyperslab_f')
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
! ! Create property list for collective dataset write
|
||
!#ifdef PETSc
|
||
! call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5pcreate_f')
|
||
! call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5pset_dxpl_mpio_f')
|
||
!#endif
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
! ! write data by fields in the datatype. Fields order is not important.
|
||
! call h5dwrite_f(dset_id, position_id, pack(arr(1,:),arr(2,:)==i)+mpiOffset, int([dataspace_size(i)],HSIZE_T),&
|
||
! hdferr, file_space_id = space_id, mem_space_id = memspace, xfer_prp = plist_id)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5dwrite_f instance_id')
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
! !close types, dataspaces
|
||
! call h5tclose_f(dtype_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5tclose_f dtype_id')
|
||
! call h5tclose_f(position_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5tclose_f position_id')
|
||
! call h5dclose_f(dset_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5dclose_f')
|
||
! call h5sclose_f(space_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5sclose_f space_id')
|
||
! call h5sclose_f(memspace, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5sclose_f memspace')
|
||
! call h5pclose_f(plist_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5pclose_f')
|
||
! call HDF5_closeGroup(mapping_ID)
|
||
|
||
! enddo
|
||
|
||
!end subroutine HDF5_backwardMappingPhase
|
||
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
!!> @brief adds the backward mapping from spatial position and constituent ID to results
|
||
!!--------------------------------------------------------------------------------------------------
|
||
!subroutine HDF5_backwardMappingHomog(material_homog,homogmemberat,homogenization_name,dataspace_size,mpiOffset,mpiOffset_homog)
|
||
! use hdf5
|
||
|
||
! integer(pInt), intent(in), dimension(:,:) :: material_homog, homogmemberat
|
||
! character(len=*), intent(in), dimension(:) :: homogenization_name
|
||
! integer(pInt), intent(in), dimension(:) :: dataspace_size, mpiOffset_homog
|
||
! integer(pInt), intent(in) :: mpiOffset
|
||
|
||
! integer(pInt) :: hdferr, NmatPoints, i
|
||
! integer(HID_T) :: mapping_id, dtype_id, dset_id, space_id, position_id, plist_id, memspace
|
||
! integer(SIZE_T) :: type_size
|
||
|
||
! integer(pInt), dimension(:,:), allocatable :: arr
|
||
|
||
! integer(HSIZE_T), dimension(1) :: counter
|
||
! integer(HSSIZE_T), dimension(1) :: fileOffset
|
||
|
||
! character(len=64) :: homogID
|
||
|
||
! NmatPoints = count(material_homog /=0)
|
||
! allocate(arr(2,NmatPoints))
|
||
|
||
! arr(1,:) = (/(i, i=0,NmatPoints-1)/)
|
||
! arr(2,:) = pack(material_homog,material_homog/=0)
|
||
|
||
! do i=1, size(homogenization_name)
|
||
! write(homogID, '(i0)') i
|
||
! mapping_ID = results_openGroup('/current/homogenization/'//trim(homogID)//'_'//homogenization_name(i))
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
! ! create dataspace
|
||
! call h5screate_simple_f(1, int([dataspace_size(i)],HSIZE_T), space_id, hdferr, &
|
||
! int([dataspace_size(i)],HSIZE_T))
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='HDF5_writeBackwardMapping')
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
! ! compound type
|
||
! call h5tget_size_f(H5T_STD_I32LE, type_size, hdferr)
|
||
! call h5tcreate_f(H5T_COMPOUND_F, type_size, dtype_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='HDF5_writeBackwardMapping: h5tcreate_f dtype_id')
|
||
|
||
! call h5tinsert_f(dtype_id, "Position", 0_SIZE_T, H5T_STD_I32LE, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5tinsert_f 0')
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
! ! create Dataset
|
||
! call h5dcreate_f(mapping_id, 'mapGeometry', dtype_id, space_id, dset_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog')
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
! ! Create memory types (one compound datatype for each member)
|
||
! call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), position_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5tcreate_f position_id')
|
||
! call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_STD_I32LE, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5tinsert_f position_id')
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
! ! Define and select hyperslabs
|
||
! counter = NmatPoints ! how big i am
|
||
! fileOffset = mpiOffset_homog(i) ! where i start to write my data
|
||
|
||
! call h5screate_simple_f(1, counter, memspace, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5screate_simple_f')
|
||
! call h5dget_space_f(dset_id, space_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5dget_space_f')
|
||
! call h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, fileOffset, counter, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5sselect_hyperslab_f')
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
! ! Create property list for collective dataset write
|
||
!#ifdef PETSc
|
||
! call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5pcreate_f')
|
||
! call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5pset_dxpl_mpio_f')
|
||
!#endif
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
! ! write data by fields in the datatype. Fields order is not important.
|
||
! call h5dwrite_f(dset_id, position_id, pack(arr(1,:),arr(2,:)==i)+mpiOffset,int([dataspace_size(i)],HSIZE_T),&
|
||
! hdferr, file_space_id = space_id, mem_space_id = memspace, xfer_prp = plist_id)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5dwrite_f instance_id')
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
! !close types, dataspaces
|
||
! call h5tclose_f(dtype_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5tclose_f dtype_id')
|
||
! call h5tclose_f(position_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5tclose_f position_id')
|
||
! call h5dclose_f(dset_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5dclose_f')
|
||
! call h5sclose_f(space_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5sclose_f space_id')
|
||
! call h5sclose_f(memspace, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5sclose_f memspace')
|
||
! call h5pclose_f(plist_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5pclose_f')
|
||
! call HDF5_closeGroup(mapping_ID)
|
||
|
||
! enddo
|
||
|
||
!end subroutine HDF5_backwardMappingHomog
|
||
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
!!> @brief adds the unique cell to node mapping
|
||
!!--------------------------------------------------------------------------------------------------
|
||
!subroutine HDF5_mappingCells(mapping)
|
||
! use hdf5
|
||
|
||
! integer(pInt), intent(in), dimension(:) :: mapping
|
||
|
||
! integer :: hdferr, Nnodes
|
||
! integer(HID_T) :: mapping_id, dset_id, space_id
|
||
|
||
! Nnodes=size(mapping)
|
||
! mapping_ID = results_openGroup("mapping")
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
!! create dataspace
|
||
! call h5screate_simple_f(1, int([Nnodes],HSIZE_T), space_id, hdferr, &
|
||
! int([Nnodes],HSIZE_T))
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_mappingCells: h5screate_simple_f')
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
!! create Dataset
|
||
! call h5dcreate_f(mapping_id, "Cell",H5T_NATIVE_INTEGER, space_id, dset_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_mappingCells')
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
!! write data by fields in the datatype. Fields order is not important.
|
||
! call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER, mapping, int([Nnodes],HSIZE_T), hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_mappingCells: h5dwrite_f instance_id')
|
||
|
||
!!--------------------------------------------------------------------------------------------------
|
||
!!close types, dataspaces
|
||
! call h5dclose_f(dset_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_mappingConstitutive: h5dclose_f')
|
||
! call h5sclose_f(space_id, hdferr)
|
||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_mappingConstitutive: h5sclose_f')
|
||
! call HDF5_closeGroup(mapping_ID)
|
||
|
||
!end subroutine HDF5_mappingCells
|
||
|
||
end module results
|