155 lines
8.1 KiB
Python
Executable File
155 lines
8.1 KiB
Python
Executable File
#!/usr/bin/env python
|
|
# -*- coding: UTF-8 no BOM -*-
|
|
|
|
import os,sys,string
|
|
import numpy as np
|
|
from optparse import OptionParser
|
|
import damask
|
|
|
|
scriptID = string.replace('$Id$','\n','\\n')
|
|
scriptName = scriptID.split()[1][:-3]
|
|
|
|
# --------------------------------------------------------------------
|
|
# MAIN
|
|
# --------------------------------------------------------------------
|
|
|
|
parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
|
|
Add RGB color value corresponding to TSL-OIM scheme for inverse pole figures.
|
|
|
|
""", version = scriptID)
|
|
|
|
parser.add_option('-p', '--pole', dest='pole', type='float', nargs=3, metavar='float float float',
|
|
help = 'lab frame direction for inverse pole figure %default')
|
|
parser.add_option('-s', '--symmetry', dest='symmetry', type='choice',
|
|
choices=damask.Symmetry.lattices[1:], metavar='string',
|
|
help = 'crystal symmetry (%s) [cubic]'%(', '.join(damask.Symmetry.lattices[1:])))
|
|
parser.add_option('-e', '--eulers', dest='eulers', metavar='string',
|
|
help = 'Euler angles label')
|
|
parser.add_option('-d', '--degrees', dest='degrees', action='store_true',
|
|
help = 'Euler angles are given in degrees [%default]')
|
|
parser.add_option('-m', '--matrix', dest='matrix', metavar='string',
|
|
help = 'orientation matrix label')
|
|
parser.add_option('-a', dest='a', metavar='string',
|
|
help = 'crystal frame a vector label')
|
|
parser.add_option('-b', dest='b', metavar='string',
|
|
help = 'crystal frame b vector label')
|
|
parser.add_option('-c', dest='c', metavar='string',
|
|
help = 'crystal frame c vector label')
|
|
parser.add_option('-q', '--quaternion', dest='quaternion', metavar='string',
|
|
help = 'quaternion label')
|
|
parser.set_defaults(pole = [0.0,0.0,1.0])
|
|
parser.set_defaults(symmetry = 'cubic')
|
|
parser.set_defaults(degrees = False)
|
|
|
|
(options, filenames) = parser.parse_args()
|
|
|
|
datainfo = { # list of requested labels per datatype
|
|
'tensor': {'len':9,
|
|
'label':[]},
|
|
'vector': {'len':3,
|
|
'label':[]},
|
|
'quaternion': {'len':4,
|
|
'label':[]},
|
|
}
|
|
|
|
input = []
|
|
if options.eulers != None:
|
|
datainfo['vector']['label'] += [options.eulers]
|
|
input += ['eulers']
|
|
if options.a != None and \
|
|
options.b != None and \
|
|
options.c != None:
|
|
datainfo['vector']['label'] += [options.a,options.b,options.c]
|
|
input += ['frame']
|
|
if options.matrix != None:
|
|
datainfo['tensor']['label'] += [options.matrix]
|
|
input += ['matrix']
|
|
if options.quaternion != None:
|
|
datainfo['quaternion']['label'] += [options.quaternion]
|
|
input += ['quaternion']
|
|
|
|
if len(input) != 1: parser.error('needs exactly one input format...')
|
|
input = input[0]
|
|
|
|
toRadians = math.pi/180.0 if options.degrees else 1.0 # rescale degrees to radians
|
|
pole = np.array(options.pole)
|
|
pole /= np.linalg.norm(pole)
|
|
|
|
# ------------------------------------------ setup file handles ------------------------------------
|
|
files = []
|
|
if filenames == []:
|
|
files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr})
|
|
else:
|
|
for name in filenames:
|
|
if os.path.exists(name):
|
|
files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w'), 'croak':sys.stderr})
|
|
|
|
# ------------------------------------------ loop over input files ----------------------------------
|
|
for file in files:
|
|
if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n')
|
|
else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n')
|
|
|
|
table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table
|
|
table.head_read() # read ASCII header info
|
|
table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:]))
|
|
|
|
column = {}
|
|
missingColumns = False
|
|
|
|
for datatype,info in datainfo.items():
|
|
for label in info['label']:
|
|
key = '1_'+label
|
|
if key not in table.labels:
|
|
file['croak'].write('column %s not found...\n'%key)
|
|
missingColumns = True # break if label not found
|
|
else:
|
|
column[label] = table.labels.index(key) # remember columns of requested data
|
|
|
|
if missingColumns:
|
|
continue
|
|
|
|
# ------------------------------------------ assemble header ---------------------------------------
|
|
table.labels_append(['%i_IPF_%g%g%g'%(i+1,options.pole[0],options.pole[1],options.pole[2]) for i in xrange(3)])
|
|
table.head_write()
|
|
|
|
# ------------------------------------------ process data ------------------------------------------
|
|
outputAlive = True
|
|
while outputAlive and table.data_read(): # read next data line of ASCII table
|
|
if input == 'eulers':
|
|
o = damask.Orientation(Eulers=toRadians*\
|
|
np.array(map(float,table.data[column[options.eulers]:\
|
|
column[options.eulers]+datainfo['vector']['len']])),
|
|
symmetry=options.symmetry).reduced()
|
|
elif input == 'matrix':
|
|
o = damask.Orientation(matrix=\
|
|
np.array([map(float,table.data[column[options.matrix]:\
|
|
column[options.matrix]+datainfo['tensor']['len']])]).reshape(np.sqrt(datainfo['tensor']['len']),
|
|
np.sqrt(datainfo['tensor']['len'])).transpose(),
|
|
symmetry=options.symmetry).reduced()
|
|
elif input == 'frame':
|
|
o = damask.Orientation(matrix=\
|
|
np.array([map(float,table.data[column[options.a]:\
|
|
column[options.a]+datainfo['vector']['len']] + \
|
|
table.data[column[options.b]:\
|
|
column[options.b]+datainfo['vector']['len']] + \
|
|
table.data[column[options.c]:\
|
|
column[options.c]+datainfo['vector']['len']]
|
|
)]).reshape(3,3),
|
|
symmetry=options.symmetry).reduced()
|
|
elif input == 'quaternion':
|
|
o = damask.Orientation(quaternion=\
|
|
np.array(map(float,table.data[column[options.quaternion]:\
|
|
column[options.quaternion]+datainfo['quaternion']['len']])),
|
|
symmetry=options.symmetry).reduced()
|
|
|
|
table.data_append(o.IPFcolor(pole))
|
|
outputAlive = table.data_write() # output processed line
|
|
|
|
# ------------------------------------------ output result -----------------------------------------
|
|
outputAlive and table.output_flush() # just in case of buffered ASCII table
|
|
|
|
table.input_close() # close input ASCII table (works for stdin)
|
|
table.output_close() # close output ASCII table (works for stdout)
|
|
if file['name'] != 'STDIN':
|
|
os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new
|