import re import pandas as pd import numpy as np class Table(): """Read and write to ASCII tables""" def __init__(self,name): self.name = name with open(self.name) as f: header,keyword = f.readline().split() if keyword == 'header': header = int(header) else: raise Exception self.comments = [f.readline()[:-1] for i in range(header-1)] labels_raw = f.readline().split() self.data = pd.read_csv(f,delim_whitespace=True,header=None) labels_repeated = [l.split('_',1)[1] if '_' in l else l for l in labels_raw] self.data.rename(columns=dict(zip([l for l in self.data.columns],labels_repeated)),inplace=True) self.shape = {} for l in labels_raw: tensor_column = re.search(':.*?_',l) if tensor_column: my_shape = tensor_column.group()[1:-1].split('x') self.shape[l.split('_',1)[1]] = tuple([int(d) for d in my_shape]) else: vector_column = re.match('.*?_',l) if vector_column: self.shape[l.split('_',1)[1]] = (int(l.split('_',1)[0]),) else: self.shape[l]=(1,) self.labels = list(dict.fromkeys(labels_repeated)) def get_array(self,label): return self.data[label].to_numpy().reshape((-1,)+self.shape[label]) def add_array(self,label,array,info): if np.product(array.shape[1:],dtype=int) == 1: self.comments.append('{}: {}'.format(label,info)) else: self.comments.append('{} {}: {}'.format(label,array.shape[1:],info)) self.shape[label] = array.shape[1:] self.labels.append(label) size = np.product(array.shape[1:]) new_data = pd.DataFrame(data=array.reshape(-1,size), columns=[label for l in range(size)]) self.data = pd.concat([self.data,new_data],axis=1) def to_ASCII(self,name=None): labels = [] for l in self.labels: if(self.shape[l] == (1,)): labels.append('{}'.format(l)) elif(len(self.shape[l]) == 1): labels+=['{}_{}'.format(i+1,l)\ for i in range(self.shape[l][0])] else: labels+=['{}:{}_{}'.format(i+1,'x'.join([str(d) for d in self.shape[l]]),l)\ for i in range(np.product(self.shape[l]))] header = ['{} header'.format(len(self.comments)+1)]\ + self.comments\ + [' '.join(labels)] with open(name if name is not None else self.name,'w') as f: for line in header: f.write(line+'\n') self.data.to_csv(f,sep=' ',index=False,header=False)