#!/usr/bin/env python2.7 # -*- coding: UTF-8 no BOM -*- import os,sys,math import numpy as np from optparse import OptionParser import damask scriptName = os.path.splitext(os.path.basename(__file__))[0] scriptID = ' '.join([scriptName,damask.version]) #-------------------------------------------------------------------------------------------------- # MAIN #-------------------------------------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [geomfile(s)]', description = """ Scales a geometry description independently in x, y, and z direction in terms of grid and/or size. Either absolute values or relative factors (like "0.25x") can be used. """, version = scriptID) parser.add_option('-g', '--grid', dest = 'grid', type = 'string', nargs = 3, metavar = 'string string string', help = 'a,b,c grid of hexahedral box [unchanged]') parser.add_option('-s', '--size', dest = 'size', type = 'string', nargs = 3, metavar = 'string string string', help = 'x,y,z size of hexahedral box [unchanged]') parser.add_option('-r', '--renumber', dest = 'renumber', action = 'store_true', help = 'renumber microstructure indices from 1..N [%default]') parser.set_defaults(renumber = False, grid = ['0','0','0'], size = ['0.0','0.0','0.0'], ) (options, filenames) = parser.parse_args() # --- loop over input files ------------------------------------------------------------------------- if filenames == []: filenames = [None] for name in filenames: try: table = damask.ASCIItable(name = name, buffered = False, labeled = False) except: continue damask.util.report(scriptName,name) # --- interpret header ---------------------------------------------------------------------------- table.head_read() info,extra_header = table.head_getGeom() damask.util.croak(['grid a b c: %s'%(' x '.join(map(str,info['grid']))), 'size x y z: %s'%(' x '.join(map(str,info['size']))), 'origin x y z: %s'%(' : '.join(map(str,info['origin']))), 'homogenization: %i'%info['homogenization'], 'microstructures: %i'%info['microstructures'], ]) errors = [] if np.any(info['grid'] < 1): errors.append('invalid grid a b c.') if np.any(info['size'] <= 0.0): errors.append('invalid size x y z.') if errors != []: damask.util.croak(errors) table.close(dismiss = True) continue # --- read data ------------------------------------------------------------------------------------ microstructure = table.microstructure_read(info['grid']) # read microstructure # --- do work ------------------------------------------------------------------------------------ newInfo = { 'grid': np.zeros(3,'i'), 'origin': np.zeros(3,'d'), 'microstructures': 0, } newInfo['grid'] = np.array([{True:round(o*float(n.translate(None,'xX'))), False: round(float(n.translate(None,'xX')))}[n[-1].lower() == 'x'] for o,n in zip(info['grid'],options.grid)],'i') newInfo['size'] = np.array([{True: o*float(n.translate(None,'xX')) , False: float(n.translate(None,'xX')) }[n[-1].lower() == 'x'] for o,n in zip(info['size'],options.size)],'d') newInfo['grid'] = np.where(newInfo['grid'] <= 0 , info['grid'],newInfo['grid']) newInfo['size'] = np.where(newInfo['size'] <= 0.0, info['size'],newInfo['size']) multiplicity = [] for j in range(3): multiplicity.append([]) last = 0 for i in range(info['grid'][j]): this = int((i+1)*float(newInfo['grid'][j])/info['grid'][j]) multiplicity[j].append(this-last) last = this microstructure = microstructure.reshape(info['grid'],order='F') microstructure = np.repeat(np.repeat(np.repeat(microstructure, multiplicity[0], axis=0),multiplicity[1], axis=1),multiplicity[2], axis=2) # --- renumber to sequence 1...Ngrains if requested ------------------------------------------------ # http://stackoverflow.com/questions/10741346/np-frequency-counts-for-unique-values-in-an-array if options.renumber: newID = 0 for microstructureID,count in enumerate(np.bincount(microstructure.reshape(newInfo['grid'].prod()))): if count != 0: newID += 1 microstructure = np.where(microstructure == microstructureID, newID,microstructure).reshape(microstructure.shape) newInfo['microstructures'] = microstructure.max() # --- report --------------------------------------------------------------------------------------- remarks = [] errors = [] if (any(newInfo['grid'] != info['grid'])): remarks.append('--> grid a b c: %s'%(' x '.join(map(str,newInfo['grid'])))) if (any(newInfo['size'] != info['size'])): remarks.append('--> size x y z: %s'%(' x '.join(map(str,newInfo['size'])))) if ( newInfo['microstructures'] != info['microstructures']): remarks.append('--> microstructures: %i'%newInfo['microstructures']) if np.any(newInfo['grid'] < 1): errors.append('invalid new grid a b c.') if np.any(newInfo['size'] <= 0.0): errors.append('invalid new size x y z.') if remarks != []: damask.util.croak(remarks) if errors != []: damask.util.croak(errors) table.close(dismiss = True) continue # --- write header --------------------------------------------------------------------------------- table.info_clear() table.info_append(extra_header+[ scriptID + ' ' + ' '.join(sys.argv[1:]), "grid\ta {grid[0]}\tb {grid[1]}\tc {grid[2]}".format(grid=newInfo['grid']), "size\tx {size[0]}\ty {size[1]}\tz {size[2]}".format(size=newInfo['size']), "origin\tx {origin[0]}\ty {origin[1]}\tz {origin[2]}".format(origin=info['origin']), "homogenization\t{homog}".format(homog=info['homogenization']), "microstructures\t{microstructures}".format(microstructures=newInfo['microstructures']), ]) table.labels_clear() table.head_write() # --- write microstructure information ------------------------------------------------------------ formatwidth = int(math.floor(math.log10(microstructure.max())+1)) table.data = microstructure.reshape((newInfo['grid'][0],newInfo['grid'][1]*newInfo['grid'][2]),order='F').transpose() table.data_writeArray('%%%ii'%(formatwidth),delimiter = ' ') # --- output finalization -------------------------------------------------------------------------- table.close() # close ASCII table