import os import pandas as pd import numpy as np import vtk from vtk.util.numpy_support import numpy_to_vtk as np_to_vtk from . import Table from . import Environment from . import version class VTK: """ Spatial visualization (and potentially manipulation). High-level interface to VTK. """ def __init__(self,geom): """ Set geometry and topology. Parameters ---------- geom : subclass of vtk.vtkDataSet Description of geometry and topology. Valid types are vtk.vtkRectilinearGrid, vtk.vtkUnstructuredGrid, or vtk.vtkPolyData. """ self.geom = geom @staticmethod def from_rectilinearGrid(grid,size,origin=np.zeros(3)): """ Create VTK of type vtk.vtkRectilinearGrid. This is the common type for results from the grid solver. Parameters ---------- grid : numpy.ndarray of shape (3) of np.dtype = int Number of cells. size : numpy.ndarray of shape (3) Physical length. origin : numpy.ndarray of shape (3), optional Spatial origin. """ coordArray = [vtk.vtkDoubleArray(),vtk.vtkDoubleArray(),vtk.vtkDoubleArray()] for dim in [0,1,2]: coords = np.linspace(origin[dim],origin[dim]+size[dim],grid[dim]+1) coordArray[dim].SetArray(np_to_vtk(coords),grid[dim]+1,1) geom = vtk.vtkRectilinearGrid() geom.SetDimensions(*(grid+1)) geom.SetXCoordinates(coordArray[0]) geom.SetYCoordinates(coordArray[1]) geom.SetZCoordinates(coordArray[2]) return VTK(geom) @staticmethod def from_unstructuredGrid(nodes,connectivity,cell_type): """ Create VTK of type vtk.vtkUnstructuredGrid. This is the common type for results from FEM solvers. Parameters ---------- nodes : numpy.ndarray of shape (:,3) Spatial position of the nodes. connectivity : numpy.ndarray of np.dtype = int Cell connectivity (0-based), first dimension determines #Cells, second dimension determines #Nodes/Cell. cell_type : str Name of the vtk.vtkCell subclass. Tested for TRIANGLE, QUAD, and HEXAHEDRON. """ vtk_nodes = vtk.vtkPoints() vtk_nodes.SetData(np_to_vtk(nodes)) cells = vtk.vtkCellArray() cells.SetNumberOfCells(connectivity.shape[0]) T = np.concatenate((np.ones((connectivity.shape[0],1),dtype=np.int64)*connectivity.shape[1], connectivity),axis=1).ravel() cells.SetCells(connectivity.shape[0],np_to_vtk(T, deep=True, array_type=vtk.VTK_ID_TYPE)) geom = vtk.vtkUnstructuredGrid() geom.SetPoints(vtk_nodes) geom.SetCells(eval('vtk.VTK_{}'.format(cell_type.split('_',1)[-1].upper())),cells) return VTK(geom) @staticmethod def from_polyData(points): """ Create VTK of type vtk.polyData. This is the common type for point-wise data. Parameters ---------- points : numpy.ndarray of shape (:,3) Spatial position of the points. """ vtk_points= vtk.vtkPoints() vtk_points.SetData(np_to_vtk(points)) geom = vtk.vtkPolyData() geom.SetPoints(vtk_points) return VTK(geom) @staticmethod def from_file(fname,dataset_type=None): """ Create VTK from file. Parameters ---------- fname : str Filename for reading. Valid extensions are .vtk, .vtr, .vtu, and .vtp. dataset_type : str, optional Name of the vtk.vtkDataSet subclass when opening an .vtk file. Valid types are vtkRectilinearGrid, vtkUnstructuredGrid, and vtkPolyData. """ ext = os.path.splitext(fname)[1] if ext == '.vtk': reader = vtk.vtkGenericDataObjectReader() reader.SetFileName(fname) reader.Update() if 'rectilineargrid' in dataset_type.lower(): geom = reader.GetRectilinearGridOutput() elif 'unstructuredgrid' in dataset_type.lower(): geom = reader.GetUnstructuredGridOutput() elif 'polydata' in dataset_type.lower(): geom = reader.GetPolyDataOutput() else: raise TypeError('Unknown dataset type for vtk file {}'.format(dataset_type)) else: if ext == '.vtr': reader = vtk.vtkXMLRectilinearGridReader() elif ext == '.vtu': reader = vtk.vtkXMLUnstructuredGridReader() elif ext == '.vtp': reader = vtk.vtkXMLPolyDataReader() else: raise TypeError('Unknown file extension {}'.format(ext)) reader.SetFileName(fname) reader.Update() geom = reader.GetOutput() return VTK(geom) # ToDo: If extension is given, check for consistency. def write(self,fname): """ Write to file. Parameters ---------- fname : str Filename for writing. """ if (isinstance(self.geom,vtk.vtkRectilinearGrid)): writer = vtk.vtkXMLRectilinearGridWriter() elif(isinstance(self.geom,vtk.vtkUnstructuredGrid)): writer = vtk.vtkXMLUnstructuredGridWriter() elif(isinstance(self.geom,vtk.vtkPolyData)): writer = vtk.vtkXMLPolyDataWriter() writer.SetFileName('{}.{}'.format(os.path.splitext(fname)[0], writer.GetDefaultFileExtension())) writer.SetCompressorTypeToZLib() writer.SetDataModeToBinary() writer.SetInputData(self.geom) writer.Write() # Check https://blog.kitware.com/ghost-and-blanking-visibility-changes/ for missing data # Needs support for pd.DataFrame and/or table def add(self,data,label=None): """Add data to either cells or points.""" N_points = self.geom.GetNumberOfPoints() N_cells = self.geom.GetNumberOfCells() if isinstance(data,np.ndarray): d = np_to_vtk(num_array=data.reshape(data.shape[0],-1),deep=True) d.SetName(label) if data.shape[0] == N_cells: self.geom.GetCellData().AddArray(d) elif data.shape[0] == N_points: self.geom.GetPointData().AddArray(d) elif isinstance(data,pd.DataFrame): pass elif isinstance(data,Table): pass def __repr__(self): """ASCII representation of the VTK data.""" writer = vtk.vtkDataSetWriter() writer.SetHeader('# DAMASK.VTK v{}'.format(version)) writer.WriteToOutputStringOn() writer.SetInputData(self.geom) writer.Write() return writer.GetOutputString() def show(self): """ Render. See http://compilatrix.com/article/vtk-1 for further ideas. """ mapper = vtk.vtkDataSetMapper() mapper.SetInputData(self.geom) actor = vtk.vtkActor() actor.SetMapper(mapper) ren = vtk.vtkRenderer() renWin = vtk.vtkRenderWindow() renWin.AddRenderer(ren) ren.AddActor(actor) ren.SetBackground(0.2,0.2,0.2) renWin.SetSize(Environment().screen_width,Environment().screen_height) iren = vtk.vtkRenderWindowInteractor() iren.SetRenderWindow(renWin) iren.Initialize() renWin.Render() iren.Start()