#!/usr/bin/env python # -*- coding: UTF-8 no BOM -*- import os,re,sys,string,fnmatch from optparse import OptionParser import damask scriptID = '$Id$' scriptName = os.path.splitext(scriptID.split()[1])[0] # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Filter rows according to condition and columns by either white or black listing. Examples: Every odd row if x coordinate is positive -- " #ip.x# >= 0.0 and #_row_#%2 == 1 ). All rows where label 'foo' equals 'bar' -- " #foo# == \"bar\" " """, version = scriptID) parser.add_option('-w','--white', dest='whitelist', action='extend', metavar='', help='white list of column labels (a,b,c,...)') parser.add_option('-b','--black', dest='blacklist', action='extend', metavar='', help='black list of column labels (a,b,c,...)') parser.add_option('-c','--condition', dest='condition', metavar='string', help='condition to filter rows') parser.set_defaults(whitelist = []) parser.set_defaults(blacklist = []) parser.set_defaults(condition = '') (options,filenames) = parser.parse_args() if filenames == []: filenames = ['STDIN'] #--- loop over input files ------------------------------------------------------------------------- for name in filenames: if name == 'STDIN': file = {'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr} file['croak'].write('\033[1m'+scriptName+'\033[0m\n') else: if not os.path.exists(name): continue file = {'name':name, 'input':open(name), 'output':open(name+'_tmp','w'), 'croak':sys.stderr} file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n') table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table table.head_read() # read ASCII header info table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:])) specials = { \ '_row_': 0, } labels = [] positions = [] for position,label in enumerate(table.labels): if (options.whitelist == [] or any([fnmatch.fnmatch(label,needle) for needle in options.whitelist])) \ and (options.blacklist == [] or not any([fnmatch.fnmatch(label,needle) for needle in options.blacklist])): # a label to keep? labels.append(label) # remember name... positions.append(position) # ...and position interpolator = [] condition = options.condition # copy per file, might be altered for position,operand in enumerate(set(re.findall(r'#(([s]#)?(.+?))#',condition))): # find three groups condition = condition.replace('#'+operand[0]+'#', { '': '{%i}'%position, 's#':'"{%i}"'%position}[operand[1]]) if operand[2] in specials: # special label ? interpolator += ['specials["%s"]'%operand[2]] else: try: interpolator += ['%s(table.data[%i])'%({ '':'float', 's#':'str'}[operand[1]], table.labels.index(operand[2]))] except: parser.error('column %s not found...\n'%operand[2]) evaluator = "'" + condition + "'.format(" + ','.join(interpolator) + ")" # ------------------------------------------ assemble header --------------------------------------- table.labels = labels # update with new label set table.head_write() # ------------------------------------------ process data ------------------------------------------ outputAlive = True while outputAlive and table.data_read(): # read next data line of ASCII table specials['_row_'] += 1 # count row if condition == '' or eval(eval(evaluator)): # valid row ? table.data = [table.data[position] for position in positions] # retain filtered columns outputAlive = table.data_write() # output processed line # ------------------------------------------ output result ----------------------------------------- outputAlive and table.output_flush() # just in case of buffered ASCII table table.input_close() # close input ASCII table (works for stdin) table.output_close() # close output ASCII table (works for stdout) if file['name'] != 'STDIN': os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new