#!/usr/bin/env python # -*- coding: UTF-8 no BOM -*- import os,sys,string from optparse import OptionParser import damask scriptID = string.replace('$Id$','\n','\\n') scriptName = os.path.splitext(scriptID.split()[1])[0] # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Add data in column(s) of second ASCIItable selected from row that is given by the value in a mapping column. """, version = scriptID) parser.add_option('-a','--asciitable', dest='asciitable', metavar='string', help='mapped ASCIItable') parser.add_option('-c','--map', dest='map', metavar='string', help='heading of column containing row mapping') parser.add_option('-o','--offset', dest='offset', type='int', metavar='int', help='offset between mapped column value and row') parser.add_option('-v','--vector', dest='vector', action='extend', metavar='', help='heading of columns containing vector field values') parser.add_option('-t','--tensor', dest='tensor', action='extend', metavar='', help='heading of columns containing tensor field values') parser.add_option('-s','--special', dest='special', action='extend', metavar='', help='heading of columns containing field values of special dimension') parser.add_option('-d','--dimension', dest='N', type='int', metavar='int', help='dimension of special field values [%default]') parser.set_defaults(vector = []) parser.set_defaults(tensor = []) parser.set_defaults(special = []) parser.set_defaults(offset = 0) parser.set_defaults(N = 1) (options,filenames) = parser.parse_args() if len(options.vector) + len(options.tensor) + len(options.special) == 0: parser.error('no data column specified...') if options.map == None: parser.error('missing mapping column...') datainfo = { # list of requested labels per datatype 'vector': {'len':3, 'label':[]}, 'tensor': {'len':9, 'label':[]}, 'special': {'len':options.N, 'label':[]}, } if options.vector != None: datainfo['vector']['label'] += options.vector if options.tensor != None: datainfo['tensor']['label'] += options.tensor if options.special != None: datainfo['special']['label'] += options.special # ------------------------------------------ processing mapping ASCIItable ------------------------- if options.asciitable != None and os.path.isfile(options.asciitable): mappedTable = damask.ASCIItable(open(options.asciitable),None,False) mappedTable.head_read() # read ASCII header info of mapped table labels = [] indices = [] for datatype,info in datainfo.items(): for label in info['label']: key = '1_'+label if info['len'] > 1 else label if key in mappedTable.labels: labels.append(label) # extend labels indices += range(mappedTable.labels.index(key), mappedTable.labels.index(key)+datainfo[datatype]['len']) else: sys.stderr.write('column %s not found...\n'%label) break mappedTable.data_readArray(indices) mappedTable.input_close() # close mapped input ASCII table else: parser.error('missing mapped ASCIItable...') # ------------------------------------------ setup file handles ------------------------------------ files = [] if filenames == []: files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr}) else: for name in filenames: if os.path.exists(name): files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w'), 'croak':sys.stderr}) # ------------------------------------------ loop over input files --------------------------------- for file in files: if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n') else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n') table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table table.head_read() # read ASCII header info table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:])) if options.map not in table.labels: file['croak'].write('column %s not found...\n'%options.map) continue # ------------------------------------------ assemble header -------------------------------------- for datatype,info in datainfo.items(): for label in info['label']: table.labels_append(label if info['len'] == 1 else \ ['%i_%s'%(i+1,label) for i in xrange(info['len'])]) # extend ASCII header of current table with new labels table.head_write() # ------------------------------------------ process data ------------------------------------------ mappedColumn = table.labels.index(options.map) outputAlive = True while outputAlive and table.data_read(): # read next data line of ASCII table table.data_append(mappedTable.data[int(table.data[mappedColumn])+options.offset-1]) # add all mapped data types outputAlive = table.data_write() # output processed line # ------------------------------------------ output result ----------------------------------------- outputAlive and table.output_flush() # just in case of buffered ASCII table table.input_close() # close input ASCII table (works for stdin) table.output_close() # close output ASCII table (works for stdout) if file['name'] != 'STDIN': os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new