#!/usr/bin/env python3 # -*- coding: UTF-8 no BOM -*- import os,sys,math import numpy as np from optparse import OptionParser import damask scriptName = os.path.splitext(os.path.basename(__file__))[0] scriptID = ' '.join([scriptName,damask.version]) # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Rotate vector and/or tensor column data by given angle around given axis. """, version = scriptID) parser.add_option('-d', '--data', dest = 'data', action = 'extend', metavar = '', help = 'vector/tensor value(s) label(s)') parser.add_option('-r', '--rotation', dest = 'rotation', type = 'float', nargs = 4, metavar = ' '.join(['float']*4), help = 'angle and axis to rotate data [%default]') parser.add_option('--degrees', dest = 'degrees', action = 'store_true', help = 'angles are given in degrees [%default]') parser.set_defaults(rotation = (0.,1.,1.,1.), # no rotation about 1,1,1 degrees = False, ) (options,filenames) = parser.parse_args() if options.data is None: parser.error('no data column specified.') toRadians = math.pi/180.0 if options.degrees else 1.0 # rescale degrees to radians q = damask.Quaternion().fromAngleAxis(toRadians*options.rotation[0],options.rotation[1:]) R = q.asMatrix() # --- loop over input files ------------------------------------------------------------------------- if filenames == []: filenames = [None] for name in filenames: try: table = damask.ASCIItable(name = name, buffered = False) except: continue damask.util.report(scriptName,name) # --- interpret header ---------------------------------------------------------------------------- table.head_read() errors = [] remarks = [] active = {'vector':[],'tensor':[]} for i,dim in enumerate(table.label_dimension(options.data)): label = options.data[i] if dim == -1: remarks.append('{} "{}" not found...'.format(datatype,me)) elif dim == 3: remarks.append('adding vector "{}"...'.format(label)) active['vector'].append(label) elif dim == 9: remarks.append('adding tensor "{}"...'.format(label)) active['tensor'].append(label) if remarks != []: damask.util.croak(remarks) if errors != []: damask.util.croak(errors) table.close(dismiss = True) continue # ------------------------------------------ assemble header -------------------------------------- table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:])) table.head_write() # ------------------------------------------ process data ------------------------------------------ outputAlive = True while outputAlive and table.data_read(): # read next data line of ASCII table for v in active['vector']: column = table.label_index(v) table.data[column:column+3] = q * np.array(list(map(float,table.data[column:column+3]))) for t in active['tensor']: column = table.label_index(v) table.data[column:column+9] = \ np.dot(R,np.dot(np.array(list(map(float,table.data[column:column+9]]))).\ reshape((3,3)),R.transpose())).reshape((9)) outputAlive = table.data_write() # output processed line # ------------------------------------------ output finalization ----------------------------------- table.close() # close ASCII tables