#!/usr/bin/env python2.7 # -*- coding: UTF-8 no BOM -*- import os,h5py,sys import numpy as np from optparse import OptionParser import damask scriptName = os.path.splitext(os.path.basename(__file__))[0] scriptID = ' '.join([scriptName,damask.version]) #-------------------------------------------------------------------------------------------------- # MAIN #-------------------------------------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog [geomfile[s]]', description = """ Convert DREAM3D file to ASCIItable """, version = scriptID) (options, filenames) = parser.parse_args() rootDir ='DataContainers/ImageDataContainer' # --- loop over input files ------------------------------------------------------------------------- if filenames == []: parser.error('no input file specified.') for name in filenames: try: table = damask.ASCIItable(outname = os.path.splitext(name)[0]+'.txt', buffered = False ) except: continue damask.util.report(scriptName,name) inFile = h5py.File(name, 'r') grid = inFile[rootDir+'/_SIMPL_GEOMETRY/DIMENSIONS'][...] size = grid * inFile[rootDir+'/_SIMPL_GEOMETRY/SPACING'][...] origin = inFile[rootDir+'/_SIMPL_GEOMETRY/ORIGIN'][...] # --- read comments -------------------------------------------------------------------------------- dat = np.hstack( (inFile[rootDir+'/CellData/EulerAngles'][...].reshape(grid.prod(),3), inFile[rootDir+'/CellData/Phases'][...].reshape(grid.prod(),1), inFile[rootDir+'/CellData/Confidence Index'][...].reshape(grid.prod(),1), inFile[rootDir+'/CellData/Fit'][...].reshape(grid.prod(),1), inFile[rootDir+'/CellData/Image Quality'][...].reshape(grid.prod(),1))) print dat.shape sys.exit() table.labels_clear() table.labels_append(['1_Euler','2_Euler','3_Euler', '1_pos','2_pos', 'IQ','CI','PhaseID','Intensity','Fit', ], # OIM Analysis 7.2 Manual, p 403 (of 517) reset = True) # ------------------------------------------ assemble header --------------------------------------- table.head_write() #--- write remainder of data file ------------------------------------------------------------------ outputAlive = True while outputAlive and table.data_read(): outputAlive = table.data_write() # ------------------------------------------ finalize output --------------------------------------- table.close()