#!/usr/bin/env python # -*- coding: UTF-8 no BOM -*- import os,sys,string import numpy as np from optparse import OptionParser import damask scriptID = string.replace('$Id$','\n','\\n') scriptName = os.path.splitext(scriptID.split()[1])[0] # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Permute all values in given column(s). """, version = scriptID) parser.add_option('-l','--label', dest = 'label', action = 'extend', metavar = '', help ='column(s) to permute') parser.add_option('-r', '--rnd', dest = 'randomSeed', type = 'int', metavar = 'int', help = 'seed of random number generator [%default]') parser.set_defaults(label = [], randomSeed = None, ) (options,filenames) = parser.parse_args() if len(options.label) == 0: parser.error('no labels specified.') # --- loop over input files ------------------------------------------------------------------------- if filenames == []: filenames = ['STDIN'] for name in filenames: if not (name == 'STDIN' or os.path.exists(name)): continue table = damask.ASCIItable(name = name, outname = name+'_tmp', buffered = False) table.croak('\033[1m'+scriptName+'\033[0m'+(': '+name if name != 'STDIN' else '')) # ------------------------------------------ read header ------------------------------------------ table.head_read() # ------------------------------------------ process labels --------------------------------------- errors = [] remarks = [] columns = [] dims = [] indices = table.label_index (options.label) dimensions = table.label_dimension(options.label) for i,index in enumerate(indices): if index == -1: remarks.append('label {} not present...'.format(options.label[i])) else: columns.append(index) dims.append(dimensions[i]) if remarks != []: table.croak(remarks) if errors != []: table.croak(errors) table.close(dismiss = True) continue # ------------------------------------------ assemble header --------------------------------------- randomSeed = int(os.urandom(4).encode('hex'), 16) if options.randomSeed == None else options.randomSeed # random seed per file np.random.seed(randomSeed) table.info_append([scriptID + '\t' + ' '.join(sys.argv[1:]), 'random seed {}'.format(randomSeed), ]) table.head_write() # ------------------------------------------ process data ------------------------------------------ table.data_readArray() # read all data at once for col,dim in zip(columns,dims): table.data[:,col:col+dim] = np.random.permutation(table.data[:,col:col+dim]) # ------------------------------------------ output result ----------------------------------------- table.data_writeArray() # ------------------------------------------ output finalization ----------------------------------- table.close() # close ASCII tables if name != 'STDIN': os.rename(name+'_tmp',name) # overwrite old one with tmp new