#!/usr/bin/env python import damask import os,sys,math,re,string from optparse import OptionParser scriptID = string.replace('$Id$','\n','\\n') scriptName = scriptID.split()[1] def integerFactorization(i): j = int(math.floor(math.sqrt(float(i)))) while (j>1 and int(i)%j != 0): j -= 1 return j def positiveRadians(angle): angle = math.radians(float(angle)) while angle < 0.0: angle += 2.0*math.pi return angle def getHeader(sizeX,sizeY,step): return [ '# TEM_PIXperUM 1.000000', '# x-star 0.509548', '# y-star 0.795272', '# z-star 0.611799', '# WorkingDistance 18.000000', '#', '# Phase 1', '# MaterialName Al', '# Formula Fe', '# Info', '# Symmetry 43', '# LatticeConstants 2.870 2.870 2.870 90.000 90.000 90.000', '# NumberFamilies 4', '# hklFamilies 1 1 0 1 0.000000 1', '# hklFamilies 2 0 0 1 0.000000 1', '# hklFamilies 2 1 1 1 0.000000 1', '# hklFamilies 3 1 0 1 0.000000 1', '# Categories 0 0 0 0 0 ', '#', '# GRID: SquareGrid', '# XSTEP: ' + str(step), '# YSTEP: ' + str(step), '# NCOLS_ODD: ' + str(sizeX), '# NCOLS_EVEN: ' + str(sizeX), '# NROWS: ' + str(sizeY), '#', '# OPERATOR: ODFsammpling', '#', '# SAMPLEID: ', '#', '# SCANID: ', '#' ] # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Transform linear binned data into Euler angles. """, version = scriptID) parser.add_option("-c", "--column", type="int", dest="column", help="starting column of Euler triplet") parser.add_option("-s", "--skip", type="int", dest="skip", help="skip this many lines of heading info [%default]") parser.set_defaults (column = 1) parser.set_defaults (skip = 1) (options,filenames) = parser.parse_args() options.column -= 1 #--- setup file handles --------------------------------------------------------------------------- files = [] if filenames == []: files.append({'name':'STDIN','input':sys.stdin,'output':sys.stdout,'croak':sys.stderr}) else: for name in filenames: if os.path.exists(name): files.append({'name':name,'input':open(name),'output':open(name+'_tmp','w'),'croak':sys.stdout}) else: print('No such file or directory: '+name) #--- loop over input files ------------------------------------------------------------------------ for file in files: file['croak'].write('\033[1m' + scriptName + '\033[0m: ' + (file['name'] if file['name'] != 'STDIN' else '') + '\n') # open texture file and read content textureFile = open(file['name']) content = textureFile.readlines() textureFile.close() m = re.match('(\d+)\s+head',content[0],re.I) if m != None and options.skip == 0: options.skip = int(m.group(1))+1 # extract orientation angles angles = [map(positiveRadians,line.split()[options.column:options.column+3]) for line in content[options.skip:]] nPoints = len(angles) sizeY = integerFactorization(nPoints) sizeX = nPoints / sizeY file['croak'].write('%s: %i*%i = %i (== %i)\n'%(file['name'],sizeX,sizeY,sizeX*sizeY,nPoints) ) # write ang file for line in getHeader(sizeX,sizeY,1.0): file['output'].write(line + '\n') for counter,point in enumerate(angles): file['output'].write(''.join(['%10.5f'%angle for angle in point])+ ''.join(['%10.5f'%coord for coord in [counter%sizeX,counter//sizeX]])+ ' 100.0 1.0 0 1 1.0\n') if file['name'] != 'STDIN': file['output'].close() os.rename(file['name']+'_tmp', os.path.splitext(file['name'])[0]+'.ang' )