import os import pandas as pd import numpy as np import vtk from vtk.util import numpy_support as nps from . import table from . import version class VTK: # capitals needed/preferred? """ Manage vtk files. tbd """ def __init__(self,geom): """tbd.""" self.geom = geom @staticmethod def from_rectilinearGrid(grid,size,origin=np.zeros(3)): """Check https://blog.kitware.com/ghost-and-blanking-visibility-changes/ for missing data.""" coordArray = [vtk.vtkDoubleArray(),vtk.vtkDoubleArray(),vtk.vtkDoubleArray()] for dim in [0,1,2]: for c in np.linspace(origin[dim],origin[dim]+size[dim],grid[dim]): coordArray[dim].InsertNextValue(c) geom = vtk.vtkRectilinearGrid() geom.SetDimensions(*grid) geom.SetXCoordinates(coordArray[0]) geom.SetYCoordinates(coordArray[1]) geom.SetZCoordinates(coordArray[2]) return VTK(geom) @staticmethod def from_unstructuredGrid(nodes,connectivity,cell_type): """ Create an unstructured grid (mesh). connectivity: 0 based at the moment, shape Ncell x N nodes cell_type: TRIANGLE, 'QUAD', 'TETRA','HEXAHEDRON' """ vtk_nodes = vtk.vtkPoints() vtk_nodes.SetData(nps.numpy_to_vtk(nodes)) cells = vtk.vtkCellArray() cells.SetNumberOfCells(connectivity.shape[0]) T = np.concatenate((np.ones((connectivity.shape[0],1),dtype=np.int64)*connectivity.shape[1], connectivity),axis=1).ravel() cells.SetCells(connectivity.shape[0],nps.numpy_to_vtk(T, deep=True, array_type=vtk.VTK_ID_TYPE)) geom = vtk.vtkUnstructuredGrid() geom.SetPoints(vtk_nodes) geom.SetCells(eval('vtk.VTK_{}'.format(cell_type.upper())),cells) return VTK(geom) @staticmethod def from_polyData(points): vtk_points= vtk.vtkPoints() vtk_points.SetData(nps.numpy_to_vtk(points)) vertices = vtk.vtkCellArray() vertices.SetNumberOfCells(points.shape[0]) T = np.concatenate((np.ones((points.shape[0],1),dtype=np.int64), np.arange(points.shape[0],dtype=np.int64).reshape(-1,1)),axis=1).ravel() vertices.SetCells(points.shape[0],nps.numpy_to_vtk(T, deep=True, array_type=vtk.VTK_ID_TYPE)) geom = vtk.vtkPolyData() geom.SetPoints(vtk_points) geom.SetVerts(vertices) return VTK(geom) @staticmethod def from_file(fname,ftype=None): ext = os.path.splitext(fname)[1] if ext == '.vtk': reader = vtk.vtkGenericDataObjectReader() reader.SetFileName(fname) reader.Update() if ftype.lower() == 'rectilineargrid': geom = reader.GetRectilinearGridOutput() elif ftype.lower() == 'unstructuredgrid': geom = reader.GetUnstructuredGridOutput() elif ftype.lower() == 'polydata': geom = reader.GetPolyDataOutput() else: raise Exception else: if ext == '.vtr': reader = vtk.vtkXMLRectilinearGridReader() elif ext == '.vtu': reader = vtk.vtkXMLUnstructuredGridReader() elif ext == '.vtp': reader = vtk.vtkXMLPolyDataReader() else: raise Exception reader.SetFileName(fname) reader.Update() geom = reader.GetOutput() return VTK(geom) def write(self,fname): """ToDo: Check if given fileextension makes sense.""" if (isinstance(self.geom,vtk.vtkRectilinearGrid)): writer = vtk.vtkXMLRectilinearGridWriter() elif(isinstance(self.geom,vtk.vtkUnstructuredGrid)): writer = vtk.vtkXMLUnstructuredGridWriter() elif(isinstance(self.geom,vtk.vtkPolyData)): writer = vtk.vtkXMLPolyDataWriter() writer.SetFileName('{}.{}'.format(os.path.splitext(fname)[0], writer.GetDefaultFileExtension())) writer.SetCompressorTypeToZLib() writer.SetDataModeToBinary() writer.SetInputData(self.geom) writer.Write() def add(self,data,label=None): Npoints = self.geom.GetNumberOfPoints() Ncells = self.geom.GetNumberOfCells() if isinstance(data,np.ndarray): shape = [data.shape[0],np.product(data.shape[1:],dtype=np.int)] d = nps.numpy_to_vtk(num_array=data.reshape(shape),deep=True) d.SetName(label) if shape[0] == Ncells: self.geom.GetCellData().AddArray(d) elif shape[0] == Npoints: self.geom.GetPointData().AddArray(d) elif isinstance(data,pd.DataFrame): pass elif isinstance(data,table): pass def __repr__(self): """ASCII representation of the VTK data.""" writer = vtk.vtkDataSetWriter() writer.SetHeader('# DAMASK.VTK v{}'.format(version)) writer.WriteToOutputStringOn() writer.SetInputData(self.geom) writer.Write() return writer.GetOutputString()