import time import shutil import os from datetime import datetime import pytest import numpy as np import h5py import damask from damask import Result from damask import mechanics @pytest.fixture def default(tmp_path,reference_dir): """Small Result file in temp location for modification.""" fname = '12grains6x7x8_tensionY.hdf5' shutil.copy(os.path.join(reference_dir,fname),tmp_path) f = Result(os.path.join(tmp_path,fname)) f.pick('times',20.0) return f @pytest.fixture def single_phase(tmp_path,reference_dir): """Single phase Result file in temp location for modification.""" fname = '6grains6x7x8_single_phase_tensionY.hdf5' shutil.copy(os.path.join(reference_dir,fname),tmp_path) return Result(os.path.join(tmp_path,fname)) @pytest.fixture def reference_dir(reference_dir_base): """Directory containing reference results.""" return os.path.join(reference_dir_base,'Result') class TestResult: def test_self_report(self,default): print(default) def test_pick_all(self,default): default.pick('increments',True) a = default.get_dataset_location('F') default.pick('increments','*') b = default.get_dataset_location('F') default.pick('increments',default.incs_in_range(0,np.iinfo(int).max)) c = default.get_dataset_location('F') default.pick('times',True) d = default.get_dataset_location('F') default.pick('times','*') e = default.get_dataset_location('F') default.pick('times',default.times_in_range(0.0,np.inf)) f = default.get_dataset_location('F') assert a == b == c == d == e ==f @pytest.mark.parametrize('what',['increments','times','constituents']) # ToDo: discuss materialpoints def test_pick_none(self,default,what): default.pick(what,False) a = default.get_dataset_location('F') default.pick(what,[]) b = default.get_dataset_location('F') assert a == b == [] @pytest.mark.parametrize('what',['increments','times','constituents']) # ToDo: discuss materialpoints def test_pick_more(self,default,what): default.pick(what,False) default.pick_more(what,'*') a = default.get_dataset_location('F') default.pick(what,True) b = default.get_dataset_location('F') assert a == b @pytest.mark.parametrize('what',['increments','times','constituents']) # ToDo: discuss materialpoints def test_pick_less(self,default,what): default.pick(what,True) default.pick_less(what,'*') a = default.get_dataset_location('F') default.pick(what,False) b = default.get_dataset_location('F') assert a == b == [] def test_pick_invalid(self,default): with pytest.raises(AttributeError): default.pick('invalid',True) def test_add_absolute(self,default): default.add_absolute('Fe') loc = {'Fe': default.get_dataset_location('Fe'), '|Fe|': default.get_dataset_location('|Fe|')} in_memory = np.abs(default.read_dataset(loc['Fe'],0)) in_file = default.read_dataset(loc['|Fe|'],0) assert np.allclose(in_memory,in_file) def test_add_calculation(self,default): default.add_calculation('x','2.0*np.abs(#F#)-1.0','-','my notes') loc = {'F': default.get_dataset_location('F'), 'x': default.get_dataset_location('x')} in_memory = 2.0*np.abs(default.read_dataset(loc['F'],0))-1.0 in_file = default.read_dataset(loc['x'],0) assert np.allclose(in_memory,in_file) def test_add_Cauchy(self,default): default.add_Cauchy('P','F') loc = {'F': default.get_dataset_location('F'), 'P': default.get_dataset_location('P'), 'sigma':default.get_dataset_location('sigma')} in_memory = mechanics.Cauchy(default.read_dataset(loc['P'],0), default.read_dataset(loc['F'],0)) in_file = default.read_dataset(loc['sigma'],0) assert np.allclose(in_memory,in_file) def test_add_determinant(self,default): default.add_determinant('P') loc = {'P': default.get_dataset_location('P'), 'det(P)':default.get_dataset_location('det(P)')} in_memory = np.linalg.det(default.read_dataset(loc['P'],0)).reshape(-1,1) in_file = default.read_dataset(loc['det(P)'],0) assert np.allclose(in_memory,in_file) def test_add_deviator(self,default): default.add_deviator('P') loc = {'P' :default.get_dataset_location('P'), 's_P':default.get_dataset_location('s_P')} in_memory = mechanics.deviatoric_part(default.read_dataset(loc['P'],0)) in_file = default.read_dataset(loc['s_P'],0) assert np.allclose(in_memory,in_file) def test_add_eigenvalues(self,default): default.add_Cauchy('P','F') default.add_eigenvalues('sigma') loc = {'sigma' :default.get_dataset_location('sigma'), 'lambda(sigma)':default.get_dataset_location('lambda(sigma)')} in_memory = mechanics.eigenvalues(default.read_dataset(loc['sigma'],0)) in_file = default.read_dataset(loc['lambda(sigma)'],0) assert np.allclose(in_memory,in_file) def test_add_eigenvectors(self,default): default.add_Cauchy('P','F') default.add_eigenvectors('sigma') loc = {'sigma' :default.get_dataset_location('sigma'), 'v(sigma)':default.get_dataset_location('v(sigma)')} in_memory = mechanics.eigenvectors(default.read_dataset(loc['sigma'],0)) in_file = default.read_dataset(loc['v(sigma)'],0) assert np.allclose(in_memory,in_file) @pytest.mark.parametrize('d',[[1,0,0],[0,1,0],[0,0,1]]) def test_add_IPFcolor(self,default,d): default.add_IPFcolor('orientation',d) loc = {'orientation': default.get_dataset_location('orientation'), 'color': default.get_dataset_location('IPFcolor_[{} {} {}]'.format(*d))} qu = default.read_dataset(loc['orientation']).view(np.double).reshape(-1,4) crystal_structure = default.get_crystal_structure() in_memory = np.empty((qu.shape[0],3),np.uint8) for i,q in enumerate(qu): o = damask.Orientation(q,crystal_structure).reduced() in_memory[i] = np.uint8(o.IPFcolor(np.array(d))*255) in_file = default.read_dataset(loc['color']) assert np.allclose(in_memory,in_file) def test_add_maximum_shear(self,default): default.add_Cauchy('P','F') default.add_maximum_shear('sigma') loc = {'sigma' :default.get_dataset_location('sigma'), 'max_shear(sigma)':default.get_dataset_location('max_shear(sigma)')} in_memory = mechanics.maximum_shear(default.read_dataset(loc['sigma'],0)).reshape(-1,1) in_file = default.read_dataset(loc['max_shear(sigma)'],0) assert np.allclose(in_memory,in_file) def test_add_Mises_strain(self,default): t = ['V','U'][np.random.randint(0,2)] m = np.random.random()*2.0 - 1.0 default.add_strain_tensor('F',t,m) label = 'epsilon_{}^{}(F)'.format(t,m) default.add_Mises(label) loc = {label :default.get_dataset_location(label), label+'_vM':default.get_dataset_location(label+'_vM')} in_memory = mechanics.Mises_strain(default.read_dataset(loc[label],0)).reshape(-1,1) in_file = default.read_dataset(loc[label+'_vM'],0) assert np.allclose(in_memory,in_file) def test_add_Mises_stress(self,default): default.add_Cauchy('P','F') default.add_Mises('sigma') loc = {'sigma' :default.get_dataset_location('sigma'), 'sigma_vM':default.get_dataset_location('sigma_vM')} in_memory = mechanics.Mises_stress(default.read_dataset(loc['sigma'],0)).reshape(-1,1) in_file = default.read_dataset(loc['sigma_vM'],0) assert np.allclose(in_memory,in_file) def test_add_norm(self,default): default.add_norm('F',1) loc = {'F': default.get_dataset_location('F'), '|F|_1':default.get_dataset_location('|F|_1')} in_memory = np.linalg.norm(default.read_dataset(loc['F'],0),ord=1,axis=(1,2),keepdims=True) in_file = default.read_dataset(loc['|F|_1'],0) assert np.allclose(in_memory,in_file) def test_add_PK2(self,default): default.add_PK2('P','F') loc = {'F':default.get_dataset_location('F'), 'P':default.get_dataset_location('P'), 'S':default.get_dataset_location('S')} in_memory = mechanics.PK2(default.read_dataset(loc['P'],0), default.read_dataset(loc['F'],0)) in_file = default.read_dataset(loc['S'],0) assert np.allclose(in_memory,in_file) @pytest.mark.parametrize('polar',[True,False]) def test_add_pole(self,default,polar): pole = np.array([1.,0.,0.]) default.add_pole('orientation',pole,polar) loc = {'orientation': default.get_dataset_location('orientation'), 'pole': default.get_dataset_location('p^{}_[1 0 0)'.format(u'rφ' if polar else 'xy'))} rot = damask.Rotation(default.read_dataset(loc['orientation']).view(np.double)) rotated_pole = rot * np.broadcast_to(pole,rot.shape+(3,)) xy = rotated_pole[:,0:2]/(1.+abs(pole[2])) in_memory = xy if not polar else \ np.block([np.sqrt(xy[:,0:1]*xy[:,0:1]+xy[:,1:2]*xy[:,1:2]),np.arctan2(xy[:,1:2],xy[:,0:1])]) in_file = default.read_dataset(loc['pole']) assert np.allclose(in_memory,in_file) def test_add_rotational_part(self,default): default.add_rotational_part('F') loc = {'F': default.get_dataset_location('F'), 'R(F)': default.get_dataset_location('R(F)')} in_memory = mechanics.rotational_part(default.read_dataset(loc['F'],0)) in_file = default.read_dataset(loc['R(F)'],0) assert np.allclose(in_memory,in_file) def test_add_spherical(self,default): default.add_spherical('P') loc = {'P': default.get_dataset_location('P'), 'p_P': default.get_dataset_location('p_P')} in_memory = mechanics.spherical_part(default.read_dataset(loc['P'],0)).reshape(-1,1) in_file = default.read_dataset(loc['p_P'],0) assert np.allclose(in_memory,in_file) def test_add_strain(self,default): t = ['V','U'][np.random.randint(0,2)] m = np.random.random()*2.0 - 1.0 default.add_strain_tensor('F',t,m) label = 'epsilon_{}^{}(F)'.format(t,m) loc = {'F': default.get_dataset_location('F'), label: default.get_dataset_location(label)} in_memory = mechanics.strain_tensor(default.read_dataset(loc['F'],0),t,m) in_file = default.read_dataset(loc[label],0) assert np.allclose(in_memory,in_file) def test_add_stretch_right(self,default): default.add_stretch_tensor('F','U') loc = {'F': default.get_dataset_location('F'), 'U(F)': default.get_dataset_location('U(F)')} in_memory = mechanics.right_stretch(default.read_dataset(loc['F'],0)) in_file = default.read_dataset(loc['U(F)'],0) assert np.allclose(in_memory,in_file) def test_add_stretch_left(self,default): default.add_stretch_tensor('F','V') loc = {'F': default.get_dataset_location('F'), 'V(F)': default.get_dataset_location('V(F)')} in_memory = mechanics.left_stretch(default.read_dataset(loc['F'],0)) in_file = default.read_dataset(loc['V(F)'],0) assert np.allclose(in_memory,in_file) def test_add_invalid(self,default): with pytest.raises(TypeError): default.add_calculation('#invalid#*2') @pytest.mark.parametrize('overwrite',['off','on']) def test_add_overwrite(self,default,overwrite): default.pick('times',default.times_in_range(0,np.inf)[-1]) default.add_Cauchy() loc = default.get_dataset_location('sigma') print(loc) with h5py.File(default.fname,'r') as f: created_first = f[loc[0]].attrs['Created'].decode() created_first = datetime.strptime(created_first,'%Y-%m-%d %H:%M:%S%z') if overwrite == 'on': default.enable_overwrite() else: default.disable_overwrite() time.sleep(2.) default.add_calculation('sigma','#sigma#*0.0+311.','not the Cauchy stress') with h5py.File(default.fname,'r') as f: created_second = f[loc[0]].attrs['Created'].decode() created_second = datetime.strptime(created_second,'%Y-%m-%d %H:%M:%S%z') if overwrite == 'on': assert created_first < created_second and np.allclose(default.read_dataset(loc),311.) else: assert created_first == created_second and not np.allclose(default.read_dataset(loc),311.) @pytest.mark.parametrize('output',['F',[],['F','P']]) def test_vtk(self,tmp_path,default,output): os.chdir(tmp_path) default.to_vtk(output) def test_XDMF(self,tmp_path,single_phase): os.chdir(tmp_path) single_phase.write_XDMF