#!/usr/bin/env python import os,re,sys,math,string,damask from optparse import OptionParser, Option # ----------------------------- class extendableOption(Option): # ----------------------------- # used for definition of new option parser action 'extend', which enables to take multiple option arguments # taken from online tutorial http://docs.python.org/library/optparse.html ACTIONS = Option.ACTIONS + ("extend",) STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",) TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",) ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",) def take_action(self, action, dest, opt, value, values, parser): if action == "extend": lvalue = value.split(",") values.ensure_value(dest, []).extend(lvalue) else: Option.take_action(self, action, dest, opt, value, values, parser) # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=extendableOption, usage='%prog options [file[s]]', description = """ Remove column(s) containing scalar, vectorial, and/or tensorial data. """ + string.replace('$Id$','\n','\\n') ) parser.add_option('-v','--vector', dest='vector', action='extend', type='string', \ help='heading of columns containing 3x1 vector field values') parser.add_option('-t','--tensor', dest='tensor', action='extend', type='string', \ help='heading of columns containing 3x3 tensor field values') parser.add_option('-s','--special', dest='special', action='extend', type='string', \ help='heading of columns containing field values of special dimension') parser.add_option('-d','--dimension', dest='N', action='store', type='int', \ help='dimension of special field values [%default]') parser.set_defaults(vector = []) parser.set_defaults(tensor = []) parser.set_defaults(special = []) parser.set_defaults(N = 1) (options,filenames) = parser.parse_args() if len(options.vector) + len(options.tensor) + len(options.special)== 0: parser.error('no data column specified...') datainfo = { # list of requested labels per datatype 'vector': {'len':3, 'label':[]}, 'tensor': {'len':9, 'label':[]}, 'special': {'len':options.N, 'label':[]}, } if options.vector != None: datainfo['vector']['label'] += options.vector if options.tensor != None: datainfo['tensor']['label'] += options.tensor if options.special != None: datainfo['special']['label'] += options.special # ------------------------------------------ setup file handles --------------------------------------- files = [] if filenames == []: files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout}) else: for name in filenames: if os.path.exists(name): files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w')}) # ------------------------------------------ loop over input files --------------------------------------- for file in files: if file['name'] != 'STDIN': print file['name'] table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table table.head_read() # read ASCII header info table.info_append(string.replace('$Id$','\n','\\n') + \ '\t' + ' '.join(sys.argv[1:])) # --------------- figure out columns to process columns = [] for datatype,info in datainfo.items(): for label in info['label']: key = {True :'1_%s', False:'%s' }[info['len']>1]%label if key not in table.labels: sys.stderr.write('column %s not found...\n'%key) else: columns.append([table.labels.index(key),info['len']]) # remember column and extent of requested data if (info['len'] == 1): table.labels.remove(label) # remove single column head else: for i in xrange(info['len']): table.labels.remove('%i_%s'%(i+1,label)) # remove multidimensional column head columns.sort(key=lambda x:x[0],reverse=True) # sort from highest column to delete backwards # ------------------------------------------ assemble header --------------------------------------- table.head_write() # ------------------------------------------ process data --------------------------------------- while table.data_read(): # read next data line of ASCII table for col,len in columns: # loop over removal candidates del table.data[col:col+len] # remove each associated entry table.data_write() # output processed line # ------------------------------------------ output result --------------------------------------- table.output_flush() # just in case of buffered ASCII table file['input'].close() # close input ASCII table if file['name'] != 'STDIN': file['output'].close # close output ASCII table os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new