#!/usr/bin/env python # -*- coding: UTF-8 no BOM -*- import os,re,sys,math,numpy,string import damask from collections import defaultdict from optparse import OptionParser, Option scriptID = '$Id$' scriptName = scriptID.split()[1] # ----------------------------- class extendableOption(Option): # ----------------------------- # used for definition of new option parser action 'extend', which enables to take multiple option arguments # taken from online tutorial http://docs.python.org/library/optparse.html ACTIONS = Option.ACTIONS + ("extend",) STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",) TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",) ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",) def take_action(self, action, dest, opt, value, values, parser): if action == "extend": lvalue = value.split(",") values.ensure_value(dest, []).extend(lvalue) else: Option.take_action(self, action, dest, opt, value, values, parser) # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=extendableOption, usage='%prog options [file[s]]', description = """ Uniformly scale values of scalar, vector, or tensor columns by given factor. """ + string.replace(scriptID,'\n','\\n') ) parser.add_option('-v','--vector', dest = 'vector', action = 'extend', type = 'string', help = 'column heading of vector to scale', metavar = '') parser.add_option('-t','--tensor', dest = 'tensor', action = 'extend', type = 'string', help = 'column heading of tensor to scale', metavar = '') parser.add_option('-r', '--rotation', dest = 'rotation', type = 'float', nargs = 4, help = 'angle and axis to rotate data') parser.add_option('-d', '--degrees', dest = 'degrees', action = 'store_true', help = 'angles are given in degrees [%default]') parser.set_defaults(vector = []) parser.set_defaults(tensor = []) parser.set_defaults(rotation = [0.,1.,1.,1.]) # no rotation about 1,1,1 parser.set_defaults(degrees = False) (options,filenames) = parser.parse_args() datainfo = { # list of requested labels per datatype 'vector': {'len':3, 'label':[]}, 'tensor': {'len':9, 'label':[]}, } if options.vector != []: datainfo['vector']['label'] += options.vector if options.tensor != []: datainfo['tensor']['label'] += options.tensor toRadians = math.pi/180.0 if options.degrees else 1.0 # rescale degrees to radians r = damask.Quaternion().fromAngleAxis(toRadians*options.rotation[0],options.rotation[1:]) R = r.asMatrix() # ------------------------------------------ setup file handles --------------------------------------- files = [] if filenames == []: files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr}) else: for name in filenames: if os.path.exists(name): files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w'), 'croak':sys.stderr}) #--- loop over input files ------------------------------------------------------------------------ for file in files: if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n') else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n') table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table table.head_read() # read ASCII header info table.info_append(string.replace(scriptName,'\n','\\n') + \ '\t' + ' '.join(sys.argv[1:])) # --------------- figure out columns to process --------------------------------------- active = defaultdict(list) column = defaultdict(dict) for datatype,info in datainfo.items(): for label in info['label']: foundIt = False for key in ['1_'+label,label]: if key in table.labels: foundIt = True active[datatype].append(label) column[datatype][label] = table.labels.index(key) # remember columns of requested data if not foundIt: file['croak'].write('column %s not found...\n'%label) # ------------------------------------------ assemble header --------------------------------------- table.head_write() # ------------------------------------------ process data --------------------------------------- outputAlive = True while outputAlive and table.data_read(): # read next data line of ASCII table datatype = 'vector' for label in active[datatype] if datatype in active else []: # loop over all requested labels table.data[column[datatype][label]:column[datatype][label]+datainfo[datatype]['len']] = \ r * numpy.array(map(float, table.data[column[datatype][label]:\ column[datatype][label]+datainfo[datatype]['len']])) datatype = 'tensor' for label in active[datatype] if datatype in active else []: # loop over all requested labels table.data[column[datatype][label]:column[datatype][label]+column[datatype]['len']] = \ (numpy.array(map(float, table.data[column[datatype][label]:\ column[datatype][label]+column[datatype]['len']])).reshape(numpy.sqrt(datainfo[datatype]['len']),\ numpy.sqrt(datainfo[datatype]['len'])) * R).reshape(datainfo[datatype]['len']) outputAlive = table.data_write() # output processed line # ------------------------------------------ output result --------------------------------------- outputAlive and table.output_flush() # just in case of buffered ASCII table if file['name'] != 'STDIN': file['input'].close() # close input ASCII table file['output'].close() # close output ASCII table os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new