#!/usr/bin/env python # -*- coding: UTF-8 no BOM -*- import os,re,sys,math,string from collections import defaultdict from optparse import OptionParser import damask scriptID = '$Id$' scriptName = scriptID.split()[1] oneThird = 1.0/3.0 def deviator(m): sph = oneThird*(m[0]+m[4]+m[8]) m[0] = m[0] - sph m[4] = m[4] - sph m[8] = m[8] - sph return m # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Add column(s) containing deviator of requested tensor column(s). """, version = string.replace(scriptID,'\n','\\n') ) parser.add_option('-t','--tensor', dest='tensor', action='extend', type='string', metavar='', help='heading of columns containing tensor field values') parser.add_option('-s','--spherical', dest='hydrostatic', action='store_true', help='also add sperical part of tensor (hydrostatic component, pressure)') parser.set_defaults(hydrostatic = False) parser.set_defaults(tensor = []) (options,filenames) = parser.parse_args() if len(options.tensor) == 0: parser.error('no data column specified...') datainfo = { # list of requested labels per datatype 'tensor': {'len':9, 'label':[]}, } datainfo['tensor']['label'] += options.tensor # ------------------------------------------ setup file handles ----------------------------------- files = [] if filenames == []: files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr}) else: for name in filenames: if os.path.exists(name): files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w'), 'croak':sys.stderr}) # ------------------------------------------ loop over input files --------------------------------------- for file in files: if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n') else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n') table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table table.head_read() # read ASCII header info table.info_append(string.replace(scriptID,'\n','\\n') + '\t' + ' '.join(sys.argv[1:])) active = defaultdict(list) column = defaultdict(dict) for datatype,info in datainfo.items(): for label in info['label']: key = {True :'1_%s', False:'%s' }[info['len']>1]%label if key not in table.labels: file['croak'].write('column %s not found...\n'%key) else: active[datatype].append(label) column[datatype][label] = table.labels.index(key) # remember columns of requested data # ------------------------------------------ assemble header --------------------------------------- for datatype,labels in active.items(): # loop over vector,tensor for label in labels: # loop over all requested determinants table.labels_append(['%i_dev(%s)'%(i+1,label) for i in xrange(9)]) # extend ASCII header with new labels if(options.hydrostatic): table.labels_append('sph(%s)'%label) table.head_write() # ------------------------------------------ process data --------------------------------------- outputAlive = True while outputAlive and table.data_read(): # read next data line of ASCII table for datatype,labels in active.items(): # loop over vector,tensor for label in labels: # loop over all deviators myTensor = map(float,table.data[column[datatype][label]: column[datatype][label]+datainfo[datatype]['len']]) table.data_append(deviator(myTensor)) if(options.hydrostatic): table.data_append(oneThird*(myTensor[0]+myTensor[4]+myTensor[8])) outputAlive = table.data_write() # output processed line # ------------------------------------------ output result --------------------------------------- outputAlive and table.output_flush() # just in case of buffered ASCII table file['input'].close() # close input ASCII table (works for stdin) file['output'].close() # close output ASCII table (works for stdout) if file['name'] != 'STDIN': os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new