#!/usr/bin/env python # -*- coding: UTF-8 no BOM -*- import os,re,sys,string,numpy,damask from optparse import OptionParser, Option scriptID = '$Id$' scriptName = scriptID.split()[1] # ----------------------------- class extendableOption(Option): # ----------------------------- # used for definition of new option parser action 'extend', which enables to take multiple option arguments # taken from online tutorial http://docs.python.org/library/optparse.html ACTIONS = Option.ACTIONS + ("extend",) STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",) TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",) ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",) def take_action(self, action, dest, opt, value, values, parser): if action == "extend": lvalue = value.split(",") values.ensure_value(dest, []).extend(lvalue) else: Option.take_action(self, action, dest, opt, value, values, parser) # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=extendableOption, usage='%prog options [file[s]]', description = """ Sort rows by given column label. Examples: Coordinates may be given in column "x", "y", and "z". Sorting with x fastest and z slowest varying index: --label x,y,z. """ + string.replace(scriptID,'\n','\\n') ) parser.add_option('-l','--label', dest='keys', action='extend', type='string', metavar='', help='list of column labels (a,b,c,...)') parser.set_defaults(key = []) (options,filenames) = parser.parse_args() if options.keys == None: parser.error('No sorting column(s) specified.') options.keys.reverse() # numpy sorts with most significant column as last # ------------------------------------------ setup file handles --------------------------------------- files = [] if filenames == []: files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr}) else: for name in filenames: if os.path.exists(name): files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w'), 'croak':sys.stderr}) # ------------------------------------------ loop over input files --------------------------------------- for file in files: if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n') else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n') table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table table.head_read() # read ASCII header info table.info_append(string.replace(scriptID,'\n','\\n') + \ '\t' + ' '.join(sys.argv[1:])) # ------------------------------------------ assemble header --------------------------------------- table.head_write() # ------------------------------------------ process data --------------------------------------- table.data_readArray() cols = [] for column in table.labels_index(options.keys): cols += [table.data[:,column]] ind = numpy.lexsort(cols) table.data = table.data[ind] table.data_writeArray() # ------------------------------------------ output result --------------------------------------- table.output_flush() # just in case of buffered ASCII table file['input'].close() # close input ASCII table if file['name'] != 'STDIN': file['output'].close() # close output ASCII table os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new