#!/usr/bin/env python3 import os import sys from io import StringIO from optparse import OptionParser import vtk import numpy as np import damask scriptName = os.path.splitext(os.path.basename(__file__))[0] scriptID = ' '.join([scriptName,damask.version]) # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """ Create regular voxel grid from points in an ASCIItable. """, version = scriptID) parser.add_option('-m', '--mode', dest = 'mode', metavar='string', type = 'choice', choices = ['cell','point'], help = 'cell-centered or point-centered coordinates') parser.add_option('-p', '--pos', '--position', dest = 'pos', type = 'string', metavar = 'string', help = 'label of coordinates [%default]') parser.set_defaults(mode = 'cell', pos = 'pos', ) (options, filenames) = parser.parse_args() if filenames == []: filenames = [None] for name in filenames: damask.util.report(scriptName,name) table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name) coords = [np.unique(table.get(options.pos)[:,i]) for i in range(3)] if options.mode == 'cell': coords = [0.5 * np.array([3.0 * coords[i][0] - coords[i][0 + int(len(coords[i]) > 1)]] + \ [coords[i][j-1] + coords[i][j] for j in range(1,len(coords[i]))] + \ [3.0 * coords[i][-1] - coords[i][-1 - int(len(coords[i]) > 1)]]) for i in range(3)] grid = np.array(list(map(len,coords)),'i') N = grid.prod() if options.mode == 'point' else (grid-1).prod() # ------------------------------------------ process data --------------------------------------- rGrid = vtk.vtkRectilinearGrid() coordArray = [vtk.vtkDoubleArray(), vtk.vtkDoubleArray(), vtk.vtkDoubleArray(), ] rGrid.SetDimensions(*grid) for i,points in enumerate(coords): for point in points: coordArray[i].InsertNextValue(point) rGrid.SetXCoordinates(coordArray[0]) rGrid.SetYCoordinates(coordArray[1]) rGrid.SetZCoordinates(coordArray[2]) # ------------------------------------------ output result --------------------------------------- if name: writer = vtk.vtkXMLRectilinearGridWriter() writer.SetCompressorTypeToZLib() writer.SetDataModeToBinary() writer.SetFileName(os.path.join(os.path.split(name)[0], os.path.splitext(os.path.split(name)[1])[0] + '_{}({})'.format(options.pos, options.mode) + '.' + writer.GetDefaultFileExtension())) else: writer = vtk.vtkDataSetWriter() writer.SetHeader('# powered by '+scriptID) writer.WriteToOutputStringOn() writer.SetInputData(rGrid) writer.Write() if name is None: sys.stdout.write(writer.GetOutputString())