#!/usr/bin/env python2.7 # -*- coding: UTF-8 no BOM -*- import os,sys import numpy as np from optparse import OptionParser import damask scriptName = os.path.splitext(os.path.basename(__file__))[0] scriptID = ' '.join([scriptName,damask.version]) # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Sort rows by given (or all) column label(s). Examples: With coordinates in columns "x", "y", and "z"; sorting with x slowest and z fastest varying index: --label x,y,z. """, version = scriptID) parser.add_option('-l','--label', dest = 'keys', action = 'extend', metavar = '', help = 'list of column labels (a,b,c,...)') parser.add_option('-r','--reverse', dest = 'reverse', action = 'store_true', help = 'sort in reverse') parser.set_defaults(reverse = False, ) (options,filenames) = parser.parse_args() # --- loop over input files ------------------------------------------------------------------------- if filenames == []: filenames = [None] for name in filenames: try: table = damask.ASCIItable(name = name, buffered = False) except: continue damask.util.report(scriptName,name) # ------------------------------------------ assemble header --------------------------------------- table.head_read() table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:])) table.head_write() # ------------------------------------------ process data --------------------------------------- table.data_readArray() keys = table.labels(raw = True)[::-1] if options.keys is None else options.keys[::-1] # numpy sorts with most significant column as last cols = [] remarks = [] for i,column in enumerate(table.label_index(keys)): if column < 0: remarks.append('label "{}" not present...'.format(keys[i])) else: cols += [table.data[:,column]] if remarks != []: damask.util.croak(remarks) ind = np.lexsort(cols) if cols != [] else np.arange(table.data.shape[0]) if options.reverse: ind = ind[::-1] # ------------------------------------------ output result --------------------------------------- table.data = table.data[ind] table.data_writeArray() table.close() # close ASCII table