#!/usr/bin/env python2.7 # -*- coding: UTF-8 no BOM -*- import os,sys,math import numpy as np from optparse import OptionParser import damask scriptName = os.path.splitext(os.path.basename(__file__))[0] scriptID = ' '.join([scriptName,damask.version]) # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Rotate vector and/or tensor column data by given angle around given axis. """, version = scriptID) parser.add_option('-v','--vector', dest = 'vector', action = 'extend', metavar = '', help = 'column heading of vector(s) to rotate') parser.add_option('-t','--tensor', dest = 'tensor', action = 'extend', metavar = '', help = 'column heading of tensor(s) to rotate') parser.add_option('-r', '--rotation', dest = 'rotation', type = 'float', nargs = 4, metavar = ' '.join(['float']*4), help = 'angle and axis to rotate data [%default]') parser.add_option('-d', '--degrees', dest = 'degrees', action = 'store_true', help = 'angles are given in degrees [%default]') parser.set_defaults(rotation = (0.,1.,1.,1.), # no rotation about 1,1,1 degrees = False, ) (options,filenames) = parser.parse_args() if options.vector is None and options.tensor is None: parser.error('no data column specified.') toRadians = math.pi/180.0 if options.degrees else 1.0 # rescale degrees to radians q = damask.Quaternion().fromAngleAxis(toRadians*options.rotation[0],options.rotation[1:]) R = q.asMatrix() # --- loop over input files ------------------------------------------------------------------------- if filenames == []: filenames = [None] for name in filenames: try: table = damask.ASCIItable(name = name, buffered = False) except: continue damask.util.report(scriptName,name) # ------------------------------------------ read header ------------------------------------------ table.head_read() # ------------------------------------------ sanity checks ---------------------------------------- items = { 'tensor': {'dim': 9, 'shape': [3,3], 'labels':options.tensor, 'active':[], 'column': []}, 'vector': {'dim': 3, 'shape': [3], 'labels':options.vector, 'active':[], 'column': []}, } errors = [] remarks = [] column = {} for type, data in items.iteritems(): for what in data['labels']: dim = table.label_dimension(what) if dim != data['dim']: remarks.append('column {} is not a {}.'.format(what,type)) else: items[type]['active'].append(what) items[type]['column'].append(table.label_index(what)) if remarks != []: damask.util.croak(remarks) if errors != []: damask.util.croak(errors) table.close(dismiss = True) continue # ------------------------------------------ assemble header -------------------------------------- table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:])) table.head_write() # ------------------------------------------ process data ------------------------------------------ outputAlive = True while outputAlive and table.data_read(): # read next data line of ASCII table datatype = 'vector' for column in items[datatype]['column']: # loop over all requested labels table.data[column:column+items[datatype]['dim']] = \ q * np.array(map(float,table.data[column:column+items[datatype]['dim']])) datatype = 'tensor' for column in items[datatype]['column']: # loop over all requested labels table.data[column:column+items[datatype]['dim']] = \ np.dot(R,np.dot(np.array(map(float,table.data[column:column+items[datatype]['dim']])).\ reshape(items[datatype]['shape']),R.transpose())).reshape(items[datatype]['dim']) outputAlive = table.data_write() # output processed line # ------------------------------------------ output finalization ----------------------------------- table.close() # close ASCII tables