#!/usr/bin/env python2.7 # -*- coding: UTF-8 no BOM -*- import os,sys import numpy as np from optparse import OptionParser from PIL import Image import damask scriptName = os.path.splitext(os.path.basename(__file__))[0] scriptID = ' '.join([scriptName,damask.version]) # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Generate PNG image from data in given column (or 2D data of overall table). """, version = scriptID) parser.add_option('-l','--label', dest = 'label', type = 'string', metavar = 'string', help = 'column containing data [all]') parser.add_option('-r','--range', dest = 'range', type = 'float', nargs = 2, metavar = 'float float', help = 'data range (min max) [auto]') parser.add_option('--gap', '--transparent', dest = 'gap', type = 'float', metavar = 'float', help = 'value to treat as transparent [%default]') parser.add_option('-d','--dimension', dest = 'dimension', type = 'int', nargs = 2, metavar = 'int int', help = 'data dimension (width height) [native]') parser.add_option('--color', dest = 'color', type = 'string', metavar = 'string', help = 'color scheme [%default]') parser.add_option('--invert', dest = 'invert', action = 'store_true', help = 'invert color scheme') parser.add_option('--abs', dest = 'abs', action = 'store_true', help = 'magnitude of values') parser.add_option('--log', dest = 'log', action = 'store_true', help = 'log10 of values') parser.add_option('--fliplr', dest = 'flipLR', action = 'store_true', help = 'flip around vertical axis') parser.add_option('--flipud', dest = 'flipUD', action = 'store_true', help = 'flip around horizontal axis') parser.add_option('--crop', dest = 'crop', type = 'int', nargs = 4, metavar = 'int int int int', help = 'pixels cropped on left, right, top, bottom') parser.add_option('-N','--pixelsize', dest = 'pixelsize', type = 'int', metavar = 'int', help = 'pixel per data point') parser.add_option('-x','--pixelsizex', dest = 'pixelsizex', type = 'int', metavar = 'int', help = 'pixel per data point along x') parser.add_option('-y','--pixelsizey', dest = 'pixelsizey', type = 'int', metavar = 'int', help = 'pixel per data point along y') parser.add_option('--show', dest = 'show', action = 'store_true', help = 'show resulting image') parser.set_defaults(label = None, range = [0.0,0.0], gap = None, dimension = [], abs = False, log = False, flipLR = False, flipUD = False, color = "gray", invert = False, crop = [0,0,0,0], pixelsize = 1, pixelsizex = 1, pixelsizey = 1, show = False, ) (options,filenames) = parser.parse_args() if options.pixelsize > 1: (options.pixelsizex,options.pixelsizey) = [options.pixelsize]*2 # --- color palette --------------------------------------------------------------------------------- theMap = damask.Colormap(predefined = options.color) if options.invert: theMap = theMap.invert() theColors = np.uint8(np.array(theMap.export(format = 'list',steps = 256))*255) # --- loop over input files ------------------------------------------------------------------------- if filenames == []: filenames = [None] for name in filenames: try: table = damask.ASCIItable(name = name, buffered = False, labeled = options.label is not None, readonly = True) except: continue damask.util.report(scriptName,name) # ------------------------------------------ read header ------------------------------------------ table.head_read() # ------------------------------------------ process data ------------------------------------------ missing_labels = table.data_readArray(options.label) if len(missing_labels) > 0: damask.util.croak('column {} not found.'.format(options.label)) table.close(dismiss = True) # close ASCIItable and remove empty file continue # convert data to values between 0 and 1 and arrange according to given options if options.dimension != []: table.data = table.data.reshape(options.dimension[1],options.dimension[0]) if options.abs: table.data = np.abs(table.data) if options.log: table.data = np.log10(table.data);options.range = np.log10(options.range) if options.flipLR: table.data = np.fliplr(table.data) if options.flipUD: table.data = np.flipud(table.data) mask = np.logical_or(table.data == options.gap, np.isnan(table.data))\ if options.gap else np.logical_not(np.isnan(table.data)) # mask gap and NaN (if gap present) if np.all(np.array(options.range) == 0.0): options.range = [table.data[mask].min(), table.data[mask].max()] damask.util.croak('data range: {0} – {1}'.format(*options.range)) delta = max(options.range) - min(options.range) avg = 0.5*(max(options.range) + min(options.range)) if delta * 1e8 <= avg: # delta around numerical noise options.range = [min(options.range) - 0.5*avg, max(options.range) + 0.5*avg] # extend range to have actual data centered within table.data = (table.data - min(options.range)) / \ (max(options.range) - min(options.range)) table.data = np.clip(table.data,0.0,1.0).\ repeat(options.pixelsizex,axis = 1).\ repeat(options.pixelsizey,axis = 0) mask = mask.\ repeat(options.pixelsizex,axis = 1).\ repeat(options.pixelsizey,axis = 0) (height,width) = table.data.shape damask.util.croak('image dimension: {0} x {1}'.format(width,height)) im = Image.fromarray(np.dstack((theColors[np.array(255*table.data,dtype = np.uint8)], 255*mask.astype(np.uint8))), 'RGBA').\ crop(( options.crop[0], options.crop[2], width -options.crop[1], height-options.crop[3])) # ------------------------------------------ output result ----------------------------------------- im.save(sys.stdout if not name else os.path.splitext(name)[0]+ \ ('' if options.label is None else '_'+options.label)+ \ '.png', format = "PNG") table.close() # close ASCII table if options.show: im.show()