#!/usr/bin/env python2.7 # -*- coding: UTF-8 no BOM -*- import os,sys import numpy as np from optparse import OptionParser import damask scriptName = os.path.splitext(os.path.basename(__file__))[0] scriptID = ' '.join([scriptName,damask.version]) # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Blows up each value to a surrounding data block of size 'packing' thus increasing the former resolution to resolution*packing. """, version = scriptID) parser.add_option('-c','--coordinates', dest = 'pos', metavar = 'string', help = 'column label of coordinates [%default]') parser.add_option('-p','--packing', dest = 'packing', type = 'int', nargs = 3, metavar = 'int int int', help = 'dimension of packed group [%default]') parser.add_option('-g','--grid', dest = 'resolution', type = 'int', nargs = 3, metavar = 'int int int', help = 'resolution in x,y,z [autodetect]') parser.add_option('-s','--size', dest = 'dimension', type = 'float', nargs = 3, metavar = 'int int int', help = 'dimension in x,y,z [autodetect]') parser.set_defaults(pos = 'pos', packing = (2,2,2), grid = (0,0,0), size = (0.0,0.0,0.0), ) (options,filenames) = parser.parse_args() options.packing = np.array(options.packing) prefix = 'blowUp{}x{}x{}_'.format(*options.packing) # --- loop over input files ------------------------------------------------------------------------- if filenames == []: filenames = [None] for name in filenames: try: table = damask.ASCIItable(name = name, outname = os.path.join(os.path.dirname(name), prefix+os.path.basename(name)) if name else name, buffered = False) except: continue damask.util.report(scriptName,name) # ------------------------------------------ read header ------------------------------------------ table.head_read() # ------------------------------------------ sanity checks ---------------------------------------- errors = [] remarks = [] if table.label_dimension(options.pos) != 3: errors.append('coordinates "{}" are not a vector.'.format(options.pos)) else: colCoord = table.label_index(options.pos) colElem = table.label_index('elem') if remarks != []: damask.util.croak(remarks) if errors != []: damask.util.croak(errors) table.close(dismiss = True) continue # --------------- figure out size and grid --------------------------------------------------------- table.data_readArray(options.pos) table.data_rewind() coords = [np.unique(table.data[:,i]) for i in range(3)] mincorner = np.array(map(min,coords)) maxcorner = np.array(map(max,coords)) grid = np.array(map(len,coords),'i') size = grid/np.maximum(np.ones(3,'d'), grid-1.0) * (maxcorner-mincorner) # size from edge to edge = dim * n/(n-1) size = np.where(grid > 1, size, min(size[grid > 1]/grid[grid > 1])) # spacing for grid==1 set to smallest among other spacings packing = np.array(options.packing,'i') outSize = grid*packing # ------------------------------------------ assemble header -------------------------------------- table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:])) table.head_write() # ------------------------------------------ process data ------------------------------------------- data = np.zeros(outSize.tolist()+[len(table.labels(raw = True))]) p = np.zeros(3,'i') for p[2] in range(grid[2]): for p[1] in range(grid[1]): for p[0] in range(grid[0]): d = p*packing table.data_read() data[d[0]:d[0]+packing[0], d[1]:d[1]+packing[1], d[2]:d[2]+packing[2], : ] = np.tile(np.array(table.data_asFloat(),'d'),packing.tolist()+[1]) # tile to match blowUp voxel size elementSize = size/grid/packing elem = 1 for c in range(outSize[2]): for b in range(outSize[1]): for a in range(outSize[0]): data[a,b,c,colCoord:colCoord+3] = [a+0.5,b+0.5,c+0.5]*elementSize if colElem != -1: data[a,b,c,colElem] = elem table.data = data[a,b,c,:].tolist() outputAlive = table.data_write() # output processed line elem += 1 # ------------------------------------------ output finalization ----------------------------------- table.close() # close input ASCII table (works for stdin)