#!/usr/bin/env python2.7 # -*- coding: UTF-8 no BOM -*- import os,sys,math from optparse import OptionParser import damask scriptName = os.path.splitext(os.path.basename(__file__))[0] scriptID = ' '.join([scriptName,damask.version]) # definition of element-wise p-norms for matrices def norm(which,object): if which == 'Abs': # p = 1 return sum(map(abs, object)) elif which == 'Frobenius': # p = 2 return math.sqrt(sum([x*x for x in object])) elif which == 'Max': # p = inf return max(map(abs, object)) # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Add column(s) containing norm of requested column(s) being either vectors or tensors. """, version = scriptID) normChoices = ['abs','frobenius','max'] parser.add_option('-n','--norm', dest = 'norm', type = 'choice', choices = normChoices, metavar='string', help = 'type of element-wise p-norm [frobenius] {%s}'%(','.join(map(str,normChoices)))) parser.add_option('-l','--label', dest = 'label', action = 'extend', metavar = '', help = 'heading of column(s) to calculate norm of') parser.set_defaults(norm = 'frobenius', ) (options,filenames) = parser.parse_args() if options.label is None: parser.error('no data column specified.') # --- loop over input files ------------------------------------------------------------------------- if filenames == []: filenames = [None] for name in filenames: try: table = damask.ASCIItable(name = name, buffered = False) except: continue damask.util.report(scriptName,name) # ------------------------------------------ read header ------------------------------------------ table.head_read() # ------------------------------------------ sanity checks ---------------------------------------- errors = [] remarks = [] columns = [] dims = [] for what in options.label: dim = table.label_dimension(what) if dim < 0: remarks.append('column {} not found...'.format(what)) else: dims.append(dim) columns.append(table.label_index(what)) table.labels_append('norm{}({})'.format(options.norm.capitalize(),what)) # extend ASCII header with new labels if remarks != []: damask.util.croak(remarks) if errors != []: damask.util.croak(errors) table.close(dismiss = True) continue # ------------------------------------------ assemble header -------------------------------------- table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:])) table.head_write() # ------------------------------------------ process data ------------------------------------------ outputAlive = True while outputAlive and table.data_read(): # read next data line of ASCII table for column,dim in zip(columns,dims): table.data_append(norm(options.norm.capitalize(), map(float,table.data[column:column+dim]))) outputAlive = table.data_write() # output processed line # ------------------------------------------ output finalization ----------------------------------- table.close() # close input ASCII table (works for stdin)