#!/usr/bin/env python2.7 # -*- coding: UTF-8 no BOM -*- import os,sys import numpy as np from optparse import OptionParser import damask scriptName = os.path.splitext(os.path.basename(__file__))[0] scriptID = ' '.join([scriptName,damask.version]) # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Add data in column(s) of mapped ASCIItable selected from the row indexed by the value in a mapping column. Row numbers start at 1. """, version = scriptID) parser.add_option('--index', dest = 'index', type = 'string', metavar = 'string', help = 'column label containing row index') parser.add_option('-o','--offset', dest = 'offset', type = 'int', metavar = 'int', help = 'constant offset for index column value [%default]') parser.add_option('-l','--label', dest = 'label', action = 'extend', metavar = '', help = 'column label(s) to be appended') parser.add_option('-a','--asciitable', dest = 'asciitable', type = 'string', metavar = 'string', help = 'indexed ASCIItable') parser.set_defaults(offset = 0, ) (options,filenames) = parser.parse_args() if options.label is None: parser.error('no data columns specified.') if options.index is None: parser.error('no index column given.') # ------------------------------------------ process indexed ASCIItable --------------------------- if options.asciitable is not None and os.path.isfile(options.asciitable): indexedTable = damask.ASCIItable(name = options.asciitable, buffered = False, readonly = True) indexedTable.head_read() # read ASCII header info of indexed table missing_labels = indexedTable.data_readArray(options.label) indexedTable.close() # close input ASCII table if len(missing_labels) > 0: damask.util.croak('column{} {} not found...'.format('s' if len(missing_labels) > 1 else '',', '.join(missing_labels))) else: parser.error('no indexed ASCIItable given.') # --- loop over input files ------------------------------------------------------------------------- if filenames == []: filenames = [None] for name in filenames: try: table = damask.ASCIItable(name = name, buffered = False) except: continue damask.util.report(scriptName,name) # ------------------------------------------ read header ------------------------------------------ table.head_read() # ------------------------------------------ sanity checks ---------------------------------------- errors = [] indexColumn = table.label_index(options.index) if indexColumn < 0: errors.append('index column {} not found.'.format(options.index)) if errors != []: damask.util.croak(errors) table.close(dismiss = True) continue # ------------------------------------------ assemble header -------------------------------------- table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:])) table.labels_append(indexedTable.labels(raw = True)) # extend ASCII header with new labels table.head_write() # ------------------------------------------ process data ------------------------------------------ outputAlive = True while outputAlive and table.data_read(): # read next data line of ASCII table try: table.data_append(indexedTable.data[int(round(float(table.data[indexColumn])))+options.offset-1]) # add all mapped data types except IndexError: table.data_append(np.nan*np.ones_like(indexedTable.data[0])) outputAlive = table.data_write() # output processed line # ------------------------------------------ output finalization ----------------------------------- table.close() # close ASCII tables