#!/usr/bin/env python # -*- coding: UTF-8 no BOM -*- import os,sys,string from optparse import OptionParser import damask scriptID = string.replace('$Id$','\n','\\n') scriptName = os.path.splitext(scriptID.split()[1])[0] # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Add data in column(s) of second ASCIItable selected from row that is given by the value in a mapping column. """, version = scriptID) parser.add_option('-c','--map', dest = 'map', type = 'string', metavar = 'string', help = 'heading of column containing row mapping') parser.add_option('-o','--offset', dest = 'offset', type = 'int', metavar = 'int', help = 'offset between mapping column value and actual row in mapped table [%default]') parser.add_option('-l','--label', dest = 'label', action = 'extend', metavar = '', help='heading of column(s) to be mapped') parser.add_option('-a','--asciitable', dest = 'asciitable', type = 'string', metavar = 'string', help = 'mapped ASCIItable') parser.set_defaults(offset = 0, ) (options,filenames) = parser.parse_args() if options.label == None: parser.error('no data columns specified.') if options.map == None: parser.error('no mapping column given.') # ------------------------------------------ process mapping ASCIItable --------------------------- if options.asciitable != None and os.path.isfile(options.asciitable): mappedTable = damask.ASCIItable(name = options.asciitable, buffered = False, readonly = True) mappedTable.head_read() # read ASCII header info of mapped table missing_labels = mappedTable.data_readArray(options.label) if len(missing_labels) > 0: mappedTable.croak('column{} {} not found...'.format('s' if len(missing_labels) > 1 else '',', '.join(missing_labels))) else: parser.error('no mapped ASCIItable given.') # --- loop over input files ------------------------------------------------------------------------- if filenames == []: filenames = [None] for name in filenames: try: table = damask.ASCIItable(name = name, buffered = False) except: continue table.report_name(scriptName,name) # ------------------------------------------ read header ------------------------------------------ table.head_read() # ------------------------------------------ sanity checks ---------------------------------------- errors = [] mappedColumn = table.label_index(options.map) if mappedColumn < 0: errors.append('mapping column {} not found.'.format(options.map)) if errors != []: table.croak(errors) table.close(dismiss = True) continue # ------------------------------------------ assemble header -------------------------------------- table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:])) table.labels_append(mappedTable.labels) # extend ASCII header with new labels table.head_write() # ------------------------------------------ process data ------------------------------------------ outputAlive = True while outputAlive and table.data_read(): # read next data line of ASCII table table.data_append(mappedTable.data[int(round(float(table.data[mappedColumn])))+options.offset-1]) # add all mapped data types outputAlive = table.data_write() # output processed line # ------------------------------------------ output finalization ----------------------------------- table.close() # close ASCII tables mappedTable.close() # close mapped input ASCII table