#!/usr/bin/env python # -*- coding: UTF-8 no BOM -*- import os,sys,string,re,vtk import damask from collections import defaultdict from optparse import OptionParser scriptID = string.replace('$Id: addCalculation.py 3465 2014-09-12 14:14:55Z MPIE\m.diehl $','\n','\\n') scriptName = os.path.splitext(scriptID.split()[1])[0] # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Add scalar and RGB tuples from ASCIItable to existing VTK voxel grid (.vtr). """, version = scriptID) parser.add_option('-v', '--vtk', dest='vtk', type='string', help = 'VTK file name') parser.add_option('-s', '--scalar', dest='scalar', action='extend', help = 'scalar values') parser.add_option('-c', '--color', dest='color', action='extend', help = 'RGB color tuples') parser.add_option('-r', '--render', dest='render', action='store_true', help = 'open output in VTK render window') parser.set_defaults(scalar = []) parser.set_defaults(color = []) parser.set_defaults(render = False) (options, filenames) = parser.parse_args() datainfo = { # list of requested labels per datatype 'scalar': {'len':1, 'label':[]}, 'color': {'len':3, 'label':[]}, } if options.vtk == None or not os.path.exists(options.vtk): parser.error('VTK file does not exist') if os.path.splitext(options.vtk)[1] == '.vtr': reader = vtk.vtkXMLRectilinearGridReader() reader.SetFileName(options.vtk) reader.Update() rGrid = reader.GetOutput() elif os.path.splitext(options.vtk)[1] == '.vtk': reader = vtk.vtkGenericDataObjectReader() reader.SetFileName(options.vtk) reader.Update() rGrid = reader.GetRectilinearGridOutput() else: parser.error('unsupported VTK file type extension') Npoints = rGrid.GetNumberOfPoints() Ncells = rGrid.GetNumberOfCells() #if Npoints != Ncells or Npoints != Nvertices: # parser.error('Number of points, cells, and vertices in VTK differ from each other'); sys.exit() if options.scalar != None: datainfo['scalar']['label'] += options.scalar if options.color != None: datainfo['color']['label'] += options.color # ------------------------------------------ setup file handles --------------------------------------- files = [] if filenames == []: files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr}) else: for name in filenames: if os.path.exists(name): files.append({'name':name, 'input':open(name), 'output':sys.stderr, 'croak':sys.stderr}) #--- loop over input files ------------------------------------------------------------------------ for file in files: if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n') else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n') table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table table.head_read() # read ASCII header info # --------------- figure out columns to process active = defaultdict(list) column = defaultdict(dict) array = defaultdict(dict) for datatype,info in datainfo.items(): for label in info['label']: foundIt = False for key in ['1_'+label,label]: if key in table.labels: foundIt = True active[datatype].append(label) column[datatype][label] = table.labels.index(key) # remember columns of requested data if datatype == 'scalar': array[datatype][label] = vtk.vtkDoubleArray() array[datatype][label].SetNumberOfComponents(1) array[datatype][label].SetName(label) elif datatype == 'color': array[datatype][label] = vtk.vtkUnsignedCharArray() array[datatype][label].SetNumberOfComponents(3) array[datatype][label].SetName(label) if not foundIt: file['croak'].write('column %s not found...\n'%label) # ------------------------------------------ process data --------------------------------------- while table.data_read(): # read next data line of ASCII table for datatype,labels in active.items(): # loop over scalar,color for label in labels: # loop over all requested items theData = table.data[column[datatype][label]:\ column[datatype][label]+datainfo[datatype]['len']] # read strings if datatype == 'color': theData = map(lambda x: int(255.*float(x)),theData) array[datatype][label].InsertNextTuple3(theData[0],theData[1],theData[2],) elif datatype == 'scalar': array[datatype][label].InsertNextValue(float(theData[0])) file['input'].close() # close input ASCII table # ------------------------------------------ add data --------------------------------------- for datatype,labels in active.items(): # loop over scalar,color if datatype == 'color': # Polydata.GetPointData().SetScalars(array[datatype][labels[0]]) rGrid.GetCellData().SetScalars(array[datatype][labels[0]]) for label in labels: # loop over all requested items # Polydata.GetPointData().AddArray(array[datatype][label]) rGrid.GetCellData().AddArray(array[datatype][label]) rGrid.Modified() if vtk.VTK_MAJOR_VERSION <= 5: rGrid.Update() # ------------------------------------------ output result --------------------------------------- writer = vtk.vtkXMLRectilinearGridWriter() writer.SetDataModeToBinary() writer.SetCompressorTypeToZLib() writer.SetFileName(os.path.splitext(options.vtk)[0]+'_added.vtr') if vtk.VTK_MAJOR_VERSION <= 5: writer.SetInput(rGrid) else: writer.SetInputData(rGrid) writer.Write() # ------------------------------------------ render result --------------------------------------- if options.render: mapper = vtk.vtkDataSetMapper() mapper.SetInputData(rGrid) actor = vtk.vtkActor() actor.SetMapper(mapper) # Create the graphics structure. The renderer renders into the # render window. The render window interactor captures mouse events # and will perform appropriate camera or actor manipulation # depending on the nature of the events. ren = vtk.vtkRenderer() renWin = vtk.vtkRenderWindow() renWin.AddRenderer(ren) ren.AddActor(actor) ren.SetBackground(1, 1, 1) renWin.SetSize(200, 200) iren = vtk.vtkRenderWindowInteractor() iren.SetRenderWindow(renWin) #ren.ResetCamera() #ren.GetActiveCamera().Zoom(1.5) iren.Initialize() renWin.Render() iren.Start()