#!/usr/bin/env python # -*- coding: UTF-8 no BOM -*- import os,sys,string,re,math,numpy from optparse import OptionParser, OptionGroup, Option, SUPPRESS_HELP # ----------------------------- class extendedOption(Option): # ----------------------------- # used for definition of new option parser action 'extend', which enables to take multiple option arguments # taken from online tutorial http://docs.python.org/library/optparse.html ACTIONS = Option.ACTIONS + ("extend",) STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",) TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",) ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",) def take_action(self, action, dest, opt, value, values, parser): if action == "extend": lvalue = value.split(",") values.ensure_value(dest, []).extend(lvalue) else: Option.take_action(self, action, dest, opt, value, values, parser) # ----------------------- MAIN ------------------------------- identifiers = { 'resolution': ['a','b','c'], 'dimension': ['x','y','z'], 'origin': ['x','y','z'], } mappings = { 'resolution': lambda x: int(x), 'dimension': lambda x: float(x), 'origin': lambda x: float(x), 'homogenization': lambda x: int(x), 'maxgraincount': lambda x: int(x), } parser = OptionParser(option_class=extendedOption, usage='%prog options [file[s]]', description = """ compress geometry files with ranges "a to b" and/or multiples "n copies of x". """ + string.replace('$Id$','\n','\\n') ) (options, filenames) = parser.parse_args() # ------------------------------------------ setup file handles --------------------------------------- files = [] if filenames == []: files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout}) else: for name in filenames: if os.path.exists(name): files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w')}) # ------------------------------------------ loop over input files --------------------------------------- for file in files: if file['name'] != 'STDIN': print file['name'] # get labels by either read the first row, or - if keyword header is present - the last line of the header firstline = file['input'].readline() m = re.search('(\d+)\s*head', firstline.lower()) if m: headerlines = int(m.group(1)) headers = [firstline]+[file['input'].readline() for i in range(headerlines)] else: headerlines = 1 headers = firstline content = file['input'].readlines() file['input'].close() info = {'resolution': [0,0,0], 'dimension': [0.0,0.0,0.0], 'origin': [0.0,0.0,0.0], 'homogenization': 1, 'maxgraincount': 0, } new_header = [] for header in headers: headitems = map(str.lower,header.split()) if headitems[0] in mappings.keys(): if headitems[0] in identifiers.keys(): for i in xrange(len(identifiers[headitems[0]])): info[headitems[0]][i] = \ mappings[headitems[0]](headitems[headitems.index(identifiers[headitems[0]][i])+1]) else: info[headitems[0]] = mappings[headitems[0]](headitems[1]) if info['resolution'] == [0,0,0]: print 'no resolution info found.' continue if info['dimension'] == [0.0,0.0,0.0]: print 'no dimension info found.' continue if file['name'] != 'STDIN': print 'resolution: %s'%(' x '.join(map(str,info['resolution']))) print 'dimension: %s'%(' x '.join(map(str,info['dimension']))) print 'origin: %s'%(' : '.join(map(str,info['origin']))) new_header.append("resolution\ta %i\tb %i\tc %i\n"%( info['resolution'][0], info['resolution'][1], info['resolution'][2],)) new_header.append("dimension\tx %f\ty %f\tz %f\n"%( info['dimension'][0], info['dimension'][1], info['dimension'][2])) new_header.append("origin\tx %f\ty %f\tz %f\n"%( info['origin'][0], info['origin'][1], info['origin'][2])) new_header.append("homogenization\t%i\n"%info['homogenization']) new_header.append("maxGrainCount\t%i\n"%info['maxgraincount']) # ------------------------------------------ assemble header --------------------------------------- file['output'].write('%i\theader\n'%(len(new_header))+''.join(new_header)) # ------------------------------------------ pack input --------------------------------------- type = '' former = -1 start = -1 reps = 0 for line in content: for current in map(int,line.split()): if current == former+1 and start+reps == former+1: type = 'to' reps += 1 elif current == former and start == former: type = 'of' reps += 1 else: output = {'': '', '.': str(former)+'\n', 'to': '%i to %i\n'%(former-reps+1,former), 'of': '%i copies of %i\n'%(reps,former), }[type] file['output'].write(output) type = '.' start = current reps = 1 former = current # write out last item... output = {'.': str(former), 'to': '%i to %i'%(former-reps+1,former), 'of': '%i copies of %i'%(reps,former), }[type] file['output'].write(output+'\n') # ------------------------------------------ output finalization --------------------------------------- if file['name'] != 'STDIN': file['output'].close() os.rename(file['name']+'_tmp',file['name'])