#!/usr/bin/env python # -*- coding: UTF-8 no BOM -*- import os,sys,string,re,numpy,vtk import damask from optparse import OptionParser, OptionGroup, Option, SUPPRESS_HELP scriptID = '$Id$' scriptName = scriptID.split()[1] #-------------------------------------------------------------------------------------------------- class extendedOption(Option): #-------------------------------------------------------------------------------------------------- # used for definition of new option parser action 'extend', which enables to take multiple option arguments # taken from online tutorial http://docs.python.org/library/optparse.html ACTIONS = Option.ACTIONS + ("extend",) STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",) TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",) ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",) def take_action(self, action, dest, opt, value, values, parser): if action == "extend": lvalue = value.split(",") values.ensure_value(dest, []).extend(lvalue) else: Option.take_action(self, action, dest, opt, value, values, parser) #-------------------------------------------------------------------------------------------------- # MAIN #-------------------------------------------------------------------------------------------------- synonyms = { 'grid': ['resolution'], 'size': ['dimension'], } identifiers = { 'grid': ['a','b','c'], 'size': ['x','y','z'], 'origin': ['x','y','z'], } mappings = { 'grid': lambda x: int(x), 'size': lambda x: float(x), 'origin': lambda x: float(x), 'homogenization': lambda x: int(x), 'microstructures': lambda x: int(x), } parser = OptionParser(option_class=extendedOption, usage='%prog [geomfile[s]]', description = """ Produce VTK rectilinear mesh of structure data from geom description """ + string.replace(scriptID,'\n','\\n') ) (options, filenames) = parser.parse_args() #--- setup file handles -------------------------------------------------------------------------- files = [] if filenames == []: files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr, }) else: for name in filenames: if os.path.exists(name): files.append({'name':name, 'input':open(name), 'output':sys.stdout, 'croak':sys.stdout, }) #--- loop over input files ------------------------------------------------------------------------ for file in files: if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n') else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n') theTable = damask.ASCIItable(file['input'],file['output'],labels=False) theTable.head_read() #--- interpret header ---------------------------------------------------------------------------- info = { 'grid': numpy.zeros(3,'i'), 'size': numpy.zeros(3,'d'), 'origin': numpy.zeros(3,'d'), 'homogenization': 0, 'microstructures': 0, } for header in theTable.info: headitems = map(str.lower,header.split()) if len(headitems) == 0: continue for synonym,alternatives in synonyms.iteritems(): if headitems[0] in alternatives: headitems[0] = synonym if headitems[0] in mappings.keys(): if headitems[0] in identifiers.keys(): for i in xrange(len(identifiers[headitems[0]])): info[headitems[0]][i] = \ mappings[headitems[0]](headitems[headitems.index(identifiers[headitems[0]][i])+1]) else: info[headitems[0]] = mappings[headitems[0]](headitems[1]) file['croak'].write('grid a b c: %s\n'%(' x '.join(map(str,info['grid']))) + \ 'size x y z: %s\n'%(' x '.join(map(str,info['size']))) + \ 'origin x y z: %s\n'%(' : '.join(map(str,info['origin']))) + \ 'homogenization: %i\n'%info['homogenization'] + \ 'microstructures: %i\n'%info['microstructures']) if numpy.any(info['grid'] < 1): file['croak'].write('invalid grid a b c.\n') continue if numpy.any(info['size'] <= 0.0): file['croak'].write('invalid size x y z.\n') continue #--- generate grid -------------------------------------------------------------------------------- grid = vtk.vtkRectilinearGrid() grid.SetDimensions([x+1 for x in info['grid']]) for i in xrange(3): temp = vtk.vtkDoubleArray() temp.SetNumberOfTuples(info['grid'][i]+1) for j in xrange(info['grid'][i]+1): temp.InsertTuple1(j,j*info['size'][i]/info['grid'][i]+info['origin'][i]) if i == 0: grid.SetXCoordinates(temp) if i == 1: grid.SetYCoordinates(temp) if i == 2: grid.SetZCoordinates(temp) #--- read microstructure information -------------------------------------------------------------- structure = vtk.vtkIntArray() structure.SetName('Microstructures') while theTable.data_read(): items = theTable.data if len(items) > 2: if items[1].lower() == 'of': items = [int(items[2])]*int(items[0]) elif items[1].lower() == 'to': items = xrange(int(items[0]),1+int(items[2])) else: items = map(int,items) else: items = map(int,items) for item in items: structure.InsertNextValue(item) grid.GetCellData().AddArray(structure) #--- write data ----------------------------------------------------------------------------------- if file['name'] == 'STDIN': writer = vtk.vtkRectilinearGridWriter() writer.WriteToOutputStringOn() writer.SetFileTypeToASCII() writer.SetHeader('# powered by '+scriptID) if vtk.VTK_MAJOR_VERSION <= 5: writer.SetInput(grid) else: writer.SetInputData(grid) writer.Write() sys.stdout.write(writer.GetOutputString()[0:writer.GetOutputStringLength()]) else: (head,tail) = os.path.split(file['name']) writer = vtk.vtkXMLRectilinearGridWriter() writer.SetDataModeToBinary() writer.SetCompressorTypeToZLib() writer.SetFileName(os.path.join(head,'mesh_'+os.path.splitext(tail)[0] +'.'+writer.GetDefaultFileExtension())) if vtk.VTK_MAJOR_VERSION <= 5: writer.SetInput(grid) else: writer.SetInputData(grid) writer.Write()